Mercurial > repos > bgruening > erga_ear

view test-data/short_summary.specific.mammalia_odb10.pre.asm2.txt @ 2:a34826ae0a73 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e293d14e82a903a4cab64dd72dfa3f3798466176
author bgruening
date Fri, 30 Aug 2024 09:27:31 +0000
parents 8c99976de71e
children
line wrap: on
line source

# BUSCO version is: 5.4.7 
# The lineage dataset is: mammalia_odb10 (Creation date: 2021-02-19, number of genomes: 24, number of BUSCOs: 9226)
# Summarized benchmarking in BUSCO notation for file /scratch/ddepanis/Elephant_project/mEleMax1.2/curated/1_evaluation/ele_pre/ASSEMBLY_FASTAS/ele_pre.asm2.fasta
# BUSCO was run in mode: euk_genome_met
# Gene predictor used: metaeuk

	***** Results: *****

	C:93.7%[S:92.9%,D:0.8%],F:1.1%,M:5.2%,n:9226	   
	8641	Complete BUSCOs (C)			   
	8570	Complete and single-copy BUSCOs (S)	   
	71	Complete and duplicated BUSCOs (D)	   
	105	Fragmented BUSCOs (F)			   
	480	Missing BUSCOs (M)			   
	9226	Total BUSCO groups searched		   

Assembly Statistics:
	555	Number of scaffolds
	632	Number of contigs
	3238925270	Total length
	0.108%	Percent gaps
	116 MB	Scaffold N50
	88 MB	Contigs N50


Dependencies and versions:
	hmmsearch: 3.1
	bbtools: 39.01
	metaeuk: 6.a5d39d9
	busco: 5.4.7