Mercurial > repos > bgruening > find_genes_located_nearby_workflow

changeset 2:38b08a771e7e draft default tip

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Uploaded
author bgruening
date Tue, 17 Mar 2015 13:34:31 -0400
parents d734579c3307
children
files find_genes_located_nearby.ga find_genes_located_nearby.png repository_dependencies.xml
diffstat 3 files changed, 54 insertions(+), 19 deletions(-) [+]
line wrap: on
line diff
--- a/find_genes_located_nearby.ga	Tue Feb 24 08:55:29 2015 -0500
+++ b/find_genes_located_nearby.ga	Tue Mar 17 13:34:31 2015 -0400
@@ -17,8 +17,8 @@
             "name": "Input dataset", 
             "outputs": [], 
             "position": {
-                "left": 247, 
-                "top": 307
+                "left": 248, 
+                "top": 311
             }, 
             "tool_errors": null, 
             "tool_id": null, 
@@ -40,7 +40,7 @@
             "name": "Input dataset", 
             "outputs": [], 
             "position": {
-                "left": 244, 
+                "left": 250, 
                 "top": 386
             }, 
             "tool_errors": null, 
@@ -417,7 +417,13 @@
                 "left": 819.5, 
                 "top": 489.5
             }, 
-            "post_job_actions": {}, 
+            "post_job_actions": {
+                "HideDatasetActionout_file1": {
+                    "action_arguments": {}, 
+                    "action_type": "HideDatasetAction", 
+                    "output_name": "out_file1"
+                }
+            }, 
             "tool_errors": null, 
             "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0", 
             "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"cond\": \"\\\"c6+10000\\\"\", \"round\": \"\\\"yes\\\"\", \"__page__\": 0}", 
@@ -484,22 +490,20 @@
                 }
             ], 
             "position": {
-                "left": 1136, 
-                "top": 325
+                "left": 1160.9166870117188, 
+                "top": 325.91668701171875
             }, 
             "post_job_actions": {
-                "RenameDatasetActionoutput": {
-                    "action_arguments": {
-                        "newname": "Protein 1 positions nearby Protein 2"
-                    }, 
-                    "action_type": "RenameDatasetAction", 
+                "HideDatasetActionoutput": {
+                    "action_arguments": {}, 
+                    "action_type": "HideDatasetAction", 
                     "output_name": "output"
                 }
             }, 
             "tool_errors": null, 
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/0.0.1", 
-            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"input1\": \"null\", \"min\": \"\\\"1\\\"\", \"__rerun_remap_job_id__\": null, \"returntype\": \"\\\"\\\"\", \"chromInfo\": \"\\\"/usr/local/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", 
-            "tool_version": "0.0.1", 
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0", 
+            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"input1\": \"null\", \"min\": \"\\\"1\\\"\", \"__rerun_remap_job_id__\": null, \"returntype\": \"\\\"\\\"\"}", 
+            "tool_version": "1.0.0", 
             "type": "tool", 
             "user_outputs": []
         }, 
@@ -507,12 +511,41 @@
             "annotation": "", 
             "id": 15, 
             "input_connections": {
-                "input1": {
+                "input": {
                     "id": 14, 
                     "output_name": "output"
                 }
             }, 
             "inputs": [], 
+            "name": "Sort", 
+            "outputs": [
+                {
+                    "name": "out_file1", 
+                    "type": "input"
+                }
+            ], 
+            "position": {
+                "left": 1154.9166870117188, 
+                "top": 458.91668701171875
+            }, 
+            "post_job_actions": {}, 
+            "tool_errors": null, 
+            "tool_id": "sort1", 
+            "tool_state": "{\"__page__\": 0, \"style\": \"\\\"alpha\\\"\", \"column\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"1\\\"}\", \"__rerun_remap_job_id__\": null, \"order\": \"\\\"DESC\\\"\", \"input\": \"null\", \"column_set\": \"[{\\\"other_order\\\": \\\"DESC\\\", \\\"__index__\\\": 0, \\\"other_column\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"2\\\"}, \\\"other_style\\\": \\\"num\\\"}]\"}", 
+            "tool_version": "1.0.3", 
+            "type": "tool", 
+            "user_outputs": []
+        }, 
+        "16": {
+            "annotation": "", 
+            "id": 16, 
+            "input_connections": {
+                "input1": {
+                    "id": 15, 
+                    "output_name": "out_file1"
+                }
+            }, 
+            "inputs": [], 
             "name": "Group", 
             "outputs": [
                 {
@@ -521,8 +554,8 @@
                 }
             ], 
             "position": {
-                "left": 1139.5, 
-                "top": 488
+                "left": 1352.5, 
+                "top": 399
             }, 
             "post_job_actions": {
                 "RenameDatasetActionout_file1": {
@@ -541,5 +574,5 @@
             "user_outputs": []
         }
     }, 
-    "uuid": "10f50489-adf1-4257-a971-8a814ef98f6c"
-}
\ No newline at end of file
+    "uuid": "12fe8ac4-30db-4db4-b8f9-7c44e0cc0788"
+}
Binary file find_genes_located_nearby.png has changed
--- a/repository_dependencies.xml	Tue Feb 24 08:55:29 2015 -0500
+++ b/repository_dependencies.xml	Tue Mar 17 13:34:31 2015 -0400
@@ -1,4 +1,6 @@
 <?xml version="1.0"?>
 <repositories description="This workflow requires the NCBI BLAST tools.">
     <repository changeset_revision="2fe07f50a41e" name="ncbi_blast_plus" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="77641d5731c8" name="intersect" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="08a01b2ce4cd" name="column_maker" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
 </repositories>