# HG changeset patch
# User bgruening
# Date 1543773208 18000
# Node ID 1ce9b1d72ec37f152e5eaa0247eb8448a8928fcf
# Parent 156e0da5b917e032b341f1c92e2f0b6d0288a151
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/flye commit 9de56f311ae694ec8c636b24be7815f92521ca96
diff -r 156e0da5b917 -r 1ce9b1d72ec3 flye.xml
--- a/flye.xml Thu Nov 29 04:34:34 2018 -0500
+++ b/flye.xml Sun Dec 02 12:53:28 2018 -0500
@@ -14,27 +14,27 @@
#set $ext = 'fastq'
#elif $input.is_of_type('fastqsanger.gz'):
#set $ext = 'fastq.gz'
- #elif $input.is_of_type('fasta.gz'):
+ #elif $input.is_of_type('fasta.gz'):
#set $ext = 'fasta.gz'
- #elif $input.is_of_type('fasta'):
+ #elif $input.is_of_type('fasta'):
#set $ext = 'fasta'
#end if
ln -s '$input' ./input_${counter}.${ext} &&
#end for
-
+
flye
$mode
#for $counter, $input in enumerate($inputs):
./input_${counter}.$ext
#end for
- -o out_dir
+ -o out_dir
-g '$g'
-t \${GALAXY_SLOTS:-4}
-i $i
#if $m:
-m '$m'
- #end if
+ #end if
2>&1
]]>
@@ -47,44 +47,44 @@
- ^([0-9]*[.])?[0-9]+[kmg]?$
+ ^([0-9]*[.])?[0-9]+[kmg]?$
-
-
+
+
-
+
-
-
+
+
-
+
-
-
+
+
-
+
-
+
"2" [label = "id 1\l39k 29x", color = "red" , penwidth = 3] ;
+"1" -> "0" [label = "id -1\l39k 29x", color = "red" , penwidth = 3] ;
+}