Mercurial > repos > bgruening > gfastats
annotate test-data/test_11_stats.tabular @ 5:5127a713de83 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 9424a8cb45102ad1481cebdd4166207094e16f22
author | bgruening |
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date | Fri, 30 Sep 2022 19:23:58 +0000 |
parents | 8ccbf07a5433 |
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rev | line source |
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2
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
1 # scaffolds 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
2 Total scaffold length 1680 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
3 Average scaffold length 1680.00 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
4 Scaffold N50 1680 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
5 Scaffold auN 1680.00 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
6 Scaffold L50 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
7 Largest scaffold 1680 |
3
8ccbf07a5433
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
2
diff
changeset
|
8 Smallest scaffold 1680 |
8ccbf07a5433
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
2
diff
changeset
|
9 # contigs 2 |
2
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
10 Total contig length 1679 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
11 Average contig length 839.50 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
12 Contig N50 922 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
13 Contig auN 847.61 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
14 Contig L50 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
15 Largest contig 922 |
3
8ccbf07a5433
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
2
diff
changeset
|
16 Smallest contig 757 |
2
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
17 # gaps in scaffolds 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
18 Total gap length in scaffolds 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
19 Average gap length in scaffolds 1.00 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
20 Gap N50 in scaffolds 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
21 Gap auN in scaffolds 1.00 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
22 Gap L50 in scaffolds 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
23 Largest gap in scaffolds 1 |
3
8ccbf07a5433
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
2
diff
changeset
|
24 Smallest gap in scaffolds 1 |
2
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
25 Base composition (A:C:G:T) 388:497:402:392 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
26 GC content % 53.54 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
27 # soft-masked bases 0 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
28 # segments 2 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
29 Total segment length 1679 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
30 Average segment length 839.50 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
31 # gaps 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
32 # paths 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
33 Scaffold N10 1680 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
34 Scaffold N20 1680 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
35 Scaffold N30 1680 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
36 Scaffold N40 1680 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
37 Scaffold N50 1680 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
38 Scaffold N60 1680 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
39 Scaffold N70 1680 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
40 Scaffold N80 1680 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
41 Scaffold N90 1680 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
42 Scaffold N100 1680 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
43 Scaffold L10 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
44 Scaffold L20 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
45 Scaffold L30 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
46 Scaffold L40 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
47 Scaffold L50 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
48 Scaffold L60 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
49 Scaffold L70 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
50 Scaffold L80 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
51 Scaffold L90 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
52 Scaffold L100 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
53 Contig N10 922 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
54 Contig N20 922 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
55 Contig N30 922 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
56 Contig N40 922 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
57 Contig N50 922 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
58 Contig N60 757 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
59 Contig N70 757 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
60 Contig N80 757 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
61 Contig N90 757 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
62 Contig N100 757 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
63 Contig L10 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
64 Contig L20 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
65 Contig L30 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
66 Contig L40 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
67 Contig L50 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
68 Contig L60 2 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
69 Contig L70 2 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
70 Contig L80 2 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
71 Contig L90 2 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
72 Contig L100 2 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
73 Gap N10 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
74 Gap N20 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
75 Gap N30 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
76 Gap N40 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
77 Gap N50 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
78 Gap N60 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
79 Gap N70 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
80 Gap N80 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
81 Gap N90 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
82 Gap N100 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
83 Gap L10 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
84 Gap L20 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
85 Gap L30 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
86 Gap L40 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
87 Gap L50 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
88 Gap L60 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
89 Gap L70 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
90 Gap L80 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
91 Gap L90 1 |
ad1149b4f795
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 0c9612e0257a872892894530669785d1e02aaacc
bgruening
parents:
diff
changeset
|
92 Gap L100 1 |