Mercurial > repos > bgruening > gfastats

annotate test-data/test_12_stats.tabular @ 10:764f2516d837 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 5ab6f941524ff25e2dac5a51372e0e7cf4524541
author bgruening
date Thu, 12 Dec 2024 20:37:13 +0000
parents 3fba9c77550a
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
3fba9c77550a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit b0a88a5b8e4870f681f572f533a8091b3caee38c
bgruening
parents: 3
diff changeset
1 +++Assembly summary+++:
3
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
2 # scaffolds: 2
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
3 Total scaffold length: 839152
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
4 Average scaffold length: 419576.00
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
5 Scaffold N50: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
6 Scaffold auN: 419576.00
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
7 Scaffold L50: 1
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
8 Largest scaffold: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
9 Smallest scaffold: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
10 # contigs: 2
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
11 Total contig length: 839152
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
12 Average contig length: 419576.00
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
13 Contig N50: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
14 Contig auN: 419576.00
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
15 Contig L50: 1
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
16 Largest contig: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
17 Smallest contig: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
18 # gaps in scaffolds: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
19 Total gap length in scaffolds: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
20 Average gap length in scaffolds: 0.00
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
21 Gap N50 in scaffolds: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
22 Gap auN in scaffolds: 0.00
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
23 Gap L50 in scaffolds: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
24 Largest gap in scaffolds: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
25 Smallest gap in scaffolds: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
26 Base composition (A:C:G:T): 204288:225102:209720:200042
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
27 GC content %: 51.82
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
28 # soft-masked bases: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
29 # segments: 1
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
30 Total segment length: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
31 Average segment length: 419576.00
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
32 # gaps: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
33 # paths: 2
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
34 Scaffold N10: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
35 Scaffold N20: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
36 Scaffold N30: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
37 Scaffold N40: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
38 Scaffold N50: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
39 Scaffold N60: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
40 Scaffold N70: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
41 Scaffold N80: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
42 Scaffold N90: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
43 Scaffold N100: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
44 Scaffold L10: 1
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
45 Scaffold L20: 1
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
46 Scaffold L30: 1
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
47 Scaffold L40: 1
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
48 Scaffold L50: 1
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
49 Scaffold L60: 2
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
50 Scaffold L70: 2
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
51 Scaffold L80: 2
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
52 Scaffold L90: 2
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
53 Scaffold L100: 2
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
54 Contig N10: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
55 Contig N20: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
56 Contig N30: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
57 Contig N40: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
58 Contig N50: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
59 Contig N60: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
60 Contig N70: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
61 Contig N80: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
62 Contig N90: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
63 Contig N100: 419576
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
64 Contig L10: 1
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
65 Contig L20: 1
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
66 Contig L30: 1
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
67 Contig L40: 1
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
68 Contig L50: 1
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
69 Contig L60: 2
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
70 Contig L70: 2
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
71 Contig L80: 2
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
72 Contig L90: 2
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
73 Contig L100: 2
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
74 Gap N10: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
75 Gap N20: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
76 Gap N30: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
77 Gap N40: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
78 Gap N50: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
79 Gap N60: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
80 Gap N70: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
81 Gap N80: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
82 Gap N90: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
83 Gap N100: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
84 Gap L10: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
85 Gap L20: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
86 Gap L30: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
87 Gap L40: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
88 Gap L50: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
89 Gap L60: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
90 Gap L70: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
91 Gap L80: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
92 Gap L90: 0
8ccbf07a5433 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
bgruening
parents:
diff changeset
93 Gap L100: 0