Mercurial > repos > bgruening > gfastats

comparison test-data/test_07_stats.tabular @ 1:2b8b4cacb83d draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 8a11d204376d9daea8026f1b33a53f40fc693bf2"
author bgruening
date Mon, 25 Apr 2022 09:38:18 +0000
parents 5799092ffdff
children 8ccbf07a5433
comparison
equal deleted inserted replaced
0:5799092ffdff 1:2b8b4cacb83d
4 Average scaffold length: 139858.67 4 Average scaffold length: 139858.67
5 Scaffold N50: 417540 5 Scaffold N50: 417540
6 Scaffold auN: 415520.91 6 Scaffold auN: 415520.91
7 Scaffold L50: 1 7 Scaffold L50: 1
8 Largest scaffold: 417540 8 Largest scaffold: 417540
9 # contigs: 6
10 Total contig length: 419573 9 Total contig length: 419573
11 Average contig length: 69928.83 10 Average contig length: 69928.83
12 Contig N50: 416949 11 Contig N50: 416949
13 Contig auN: 414345.81 12 Contig auN: 414345.81
14 Contig L50: 1 13 Contig L50: 1
15 Largest contig: 416949 14 Largest contig: 416949
16 # gaps: 3 15 # gaps in scaffolds: 3
17 Total gap length: 3 16 Total gap length in scaffolds: 3
18 Average gap length: 1.00 17 Average gap length in scaffolds: 1.00
19 Gap N50: 1 18 Gap N50 in scaffolds: 1
20 Gap auN: 1.00 19 Gap auN in scaffolds: 1.00
21 Gap L50: 2 20 Gap L50 in scaffolds: 2
22 Largest gap: 1 21 Largest gap in scaffolds: 1
23 Base composition (ACGT): 102144, 112550, 104859, 100020 22 Base composition (A:C:G:T): 102144:112550:104859:100020
24 GC content %: 51.82 23 GC content %: 51.82
25 # soft-masked bases: 0 24 # soft-masked bases: 0
25 # segments: 6
26 Total segment length: 419573
27 Average segment length: 69928.83
28 # gaps: 3
26 # paths: 3 29 # paths: 3
27 Scaffold N10: 417540 30 Scaffold N10: 417540
28 Scaffold N20: 417540 31 Scaffold N20: 417540
29 Scaffold N30: 417540 32 Scaffold N30: 417540
30 Scaffold N40: 417540 33 Scaffold N40: 417540