comparison test-data/test_03_stats.tabular @ 0:5799092ffdff draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
author bgruening
date Wed, 09 Mar 2022 10:29:20 +0000
parents
children 2b8b4cacb83d
comparison
equal deleted inserted replaced
-1:000000000000 0:5799092ffdff
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1411 Comment
1412 Total segment length 8847
1413 Base composition (ACGT) 2609, 1513, 1563, 3162
1414 GC content % 34.77
1415 # soft-masked bases 0
1416
1417 Seq 178
1418 Header 3bfa7a5d-2aa7-40eb-a745-0d15d7a88cab.1
1419 Comment
1420 Total segment length 12142
1421 Base composition (ACGT) 4227, 2050, 2188, 3677
1422 GC content % 34.90
1423 # soft-masked bases 0
1424
1425 Seq 179
1426 Header 062b0e2b-42c2-415a-93d5-944643d9e5e6.1
1427 Comment
1428 Total segment length 1076
1429 Base composition (ACGT) 328, 236, 232, 280
1430 GC content % 43.49
1431 # soft-masked bases 0
1432
1433 Seq 180
1434 Header 652a78d6-b9bd-4fb3-869e-f33b2fb8a745.1
1435 Comment
1436 Total segment length 6996
1437 Base composition (ACGT) 1873, 1283, 1287, 2553
1438 GC content % 36.74
1439 # soft-masked bases 0
1440
1441 Seq 181
1442 Header 97d47376-d56c-4447-9a92-a9a40b3da660.1
1443 Comment
1444 Total segment length 4144
1445 Base composition (ACGT) 1440, 769, 759, 1176
1446 GC content % 36.87
1447 # soft-masked bases 0
1448
1449 Seq 182
1450 Header cd1c1488-8997-40b6-b7ab-2366a8cf00a8.1
1451 Comment
1452 Total segment length 7728
1453 Base composition (ACGT) 2723, 1376, 1485, 2144
1454 GC content % 37.02
1455 # soft-masked bases 0
1456
1457 Seq 183
1458 Header a606d237-d887-4671-94d7-3e5a571cf34f.1
1459 Comment
1460 Total segment length 2227
1461 Base composition (ACGT) 767, 372, 394, 694
1462 GC content % 34.40
1463 # soft-masked bases 0
1464
1465 Seq 184
1466 Header 75675f80-7982-4af2-9111-bd76d7325968.1
1467 Comment
1468 Total segment length 6728
1469 Base composition (ACGT) 2029, 1170, 1495, 2034
1470 GC content % 39.61
1471 # soft-masked bases 0
1472
1473 Seq 185
1474 Header 29205a85-42bf-425f-b0c8-42a3603d2abc.1
1475 Comment
1476 Total segment length 1472
1477 Base composition (ACGT) 498, 240, 257, 477
1478 GC content % 33.76
1479 # soft-masked bases 0
1480
1481 Seq 186
1482 Header 1f2f9610-80cf-4e4b-90f5-840c3ba90f35.1
1483 Comment
1484 Total segment length 6074
1485 Base composition (ACGT) 1662, 1089, 1140, 2183
1486 GC content % 36.70
1487 # soft-masked bases 0
1488
1489 Seq 187
1490 Header 46f1d129-9f86-45c7-a9e2-1250ebbe5eed.1
1491 Comment
1492 Total segment length 5700
1493 Base composition (ACGT) 1546, 1022, 1075, 2057
1494 GC content % 36.79
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1496
1497 Seq 188
1498 Header be94d96b-0c90-4a78-beff-9575123f3f42.1
1499 Comment
1500 Total segment length 7009
1501 Base composition (ACGT) 2443, 1245, 1278, 2043
1502 GC content % 36.00
1503 # soft-masked bases 0
1504
1505 Seq 189
1506 Header 0c6fc9d7-0385-46c5-8869-1b6f8e6a39d6.1
1507 Comment
1508 Total segment length 4650
1509 Base composition (ACGT) 1259, 888, 954, 1549
1510 GC content % 39.61
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1512
1513 Seq 190
1514 Header 94a9a3f9-b318-4cf9-a60d-11888856f2e5.1
1515 Comment
1516 Total segment length 5557
1517 Base composition (ACGT) 1984, 1015, 1035, 1523
1518 GC content % 36.89
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1520
1521 Seq 191
1522 Header 2ae01b26-de6a-4f64-ae9a-5bac19dfe8eb.1
1523 Comment
1524 Total segment length 10752
1525 Base composition (ACGT) 3023, 2001, 1932, 3796
1526 GC content % 36.58
1527 # soft-masked bases 0
1528
1529 Seq 192
1530 Header cf9094c2-11c2-4ed0-acee-68798a448c56.1
1531 Comment
1532 Total segment length 3135
1533 Base composition (ACGT) 884, 526, 564, 1161
1534 GC content % 34.77
1535 # soft-masked bases 0
1536
1537 Seq 193
1538 Header d6ef2e66-9547-488c-aa53-554531f03cd8.1
1539 Comment
1540 Total segment length 2970
1541 Base composition (ACGT) 887, 545, 569, 969
1542 GC content % 37.51
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1544
1545 Seq 194
1546 Header 16faf9c6-9887-41e4-97d2-4b9433c4c6b5.1
1547 Comment
1548 Total segment length 5256
1549 Base composition (ACGT) 1862, 942, 968, 1484
1550 GC content % 36.34
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1552
1553 Seq 195
1554 Header 15e1d478-ee33-4a38-99f0-4fce40af07c2.1
1555 Comment
1556 Total segment length 1103
1557 Base composition (ACGT) 348, 191, 184, 380
1558 GC content % 34.00
1559 # soft-masked bases 0
1560
1561 Seq 196
1562 Header 5aad2a5c-2896-419c-8aab-4bc1238fea95.1
1563 Comment
1564 Total segment length 5515
1565 Base composition (ACGT) 1489, 987, 1034, 2005
1566 GC content % 36.65
1567 # soft-masked bases 0
1568
1569 Seq 197
1570 Header a7d909b6-faa4-4bfa-bd82-3e2afd8d2185.1
1571 Comment
1572 Total segment length 5784
1573 Base composition (ACGT) 1823, 985, 999, 1977
1574 GC content % 34.30
1575 # soft-masked bases 0
1576
1577 Seq 198
1578 Header ce713eb6-99b4-4dc3-83d3-056664bfcd99.1
1579 Comment
1580 Total segment length 8283
1581 Base composition (ACGT) 2271, 1489, 1481, 3042
1582 GC content % 35.86
1583 # soft-masked bases 0
1584
1585 Seq 199
1586 Header 81f3e7bf-4e15-43f6-8a83-6bd617991df9.1
1587 Comment
1588 Total segment length 8421
1589 Base composition (ACGT) 3009, 1522, 1533, 2357
1590 GC content % 36.28
1591 # soft-masked bases 0
1592
1593 Seq 200
1594 Header a281deab-38f6-4e16-9129-a9dd00a14fcf.1
1595 Comment
1596 Total segment length 5802
1597 Base composition (ACGT) 1537, 1023, 1072, 2170
1598 GC content % 36.11
1599 # soft-masked bases 0
1600
1601 Seq 201
1602 Header 325f1331-dec9-41b8-a69f-028b36681560.1
1603 Comment
1604 Total segment length 5557
1605 Base composition (ACGT) 1863, 1027, 1028, 1639
1606 GC content % 36.98
1607 # soft-masked bases 0
1608
1609 Seq 202
1610 Header 140e6d68-cc21-4c3c-b854-de9594320be2.1
1611 Comment
1612 Total segment length 4627
1613 Base composition (ACGT) 1663, 865, 858, 1241
1614 GC content % 37.24
1615 # soft-masked bases 0
1616
1617 Seq 203
1618 Header bc025485-f152-4e18-ab61-740da71cc8a3.1
1619 Comment
1620 Total segment length 2941
1621 Base composition (ACGT) 812, 484, 542, 1103
1622 GC content % 34.89
1623 # soft-masked bases 0
1624
1625 Seq 204
1626 Header 751f281c-c196-4257-9580-e203e4da2aeb.1
1627 Comment
1628 Total segment length 5891
1629 Base composition (ACGT) 1611, 1152, 1164, 1964
1630 GC content % 39.31
1631 # soft-masked bases 0
1632
1633 Seq 205
1634 Header 9035679c-4e33-44f0-8f57-b4e7791d2616.1
1635 Comment
1636 Total segment length 5428
1637 Base composition (ACGT) 1864, 971, 1118, 1475
1638 GC content % 38.49
1639 # soft-masked bases 0
1640
1641 Seq 206
1642 Header a2d82a53-518c-4224-8f89-41723c3fa434.1
1643 Comment
1644 Total segment length 4661
1645 Base composition (ACGT) 1680, 847, 872, 1262
1646 GC content % 36.88
1647 # soft-masked bases 0
1648
1649 Seq 207
1650 Header 48f635ff-a554-4baf-b00d-04b89da3c499.1
1651 Comment
1652 Total segment length 855
1653 Base composition (ACGT) 304, 156, 159, 236
1654 GC content % 36.84
1655 # soft-masked bases 0
1656
1657 Seq 208
1658 Header 88a5ba1b-a388-48d1-964c-71f836904291.1
1659 Comment
1660 Total segment length 1435
1661 Base composition (ACGT) 432, 231, 238, 534
1662 GC content % 32.68
1663 # soft-masked bases 0
1664
1665 Seq 209
1666 Header 5f3b0d4d-e80b-4ec9-bc9f-8f642acef345.1
1667 Comment
1668 Total segment length 2360
1669 Base composition (ACGT) 852, 419, 400, 689
1670 GC content % 34.70
1671 # soft-masked bases 0
1672
1673 # scaffolds 209
1674 Total scaffold length 1466260
1675 Average scaffold length 7015.60
1676 Scaffold N50 9054
1677 Scaffold auN 9961.88
1678 Scaffold L50 59
1679 Largest scaffold 27298
1680 # contigs 209
1681 Total contig length 1466260
1682 Average contig length 7015.60
1683 Contig N50 9054
1684 Contig auN 9961.88
1685 Contig L50 59
1686 Largest contig 27298
1687 # gaps 0
1688 Total gap length 0
1689 Average gap length -nan
1690 Gap N50 0
1691 Gap auN 0.00
1692 Gap L50 0
1693 Largest gap 0
1694 Base composition (ACGT) 418269, 304935, 314298, 428758
1695 GC content % 42.23
1696 # soft-masked bases 0
1697 # paths 209