Mercurial > repos > bgruening > gfastats

comparison test-data/test_04_stats.tabular @ 3:8ccbf07a5433 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
author bgruening
date Mon, 11 Jul 2022 14:13:13 +0000
parents 2b8b4cacb83d
children
comparison
equal deleted inserted replaced
2:ad1149b4f795 3:8ccbf07a5433
7 Scaffold L50 1 7 Scaffold L50 1
8 Scaffold NG50 417540 8 Scaffold NG50 417540
9 Scaffold auNG 290571.00 9 Scaffold auNG 290571.00
10 Scaffold LG50 1 10 Scaffold LG50 1
11 Largest scaffold 417540 11 Largest scaffold 417540
12 Smallest scaffold 356
13 # contigs 6
12 Total contig length 419573 14 Total contig length 419573
13 Average contig length 69928.83 15 Average contig length 69928.83
14 Contig N50 416949 16 Contig N50 416949
15 Contig auN 414345.81 17 Contig auN 414345.81
16 Contig L50 1 18 Contig L50 1
17 Contig NG50 416949 19 Contig NG50 416949
18 Contig auNG 289747.19 20 Contig auNG 289747.19
19 Contig LG50 1 21 Contig LG50 1
20 Largest contig 416949 22 Largest contig 416949
23 Smallest contig 101
21 # gaps in scaffolds 3 24 # gaps in scaffolds 3
22 Total gap length in scaffolds 3 25 Total gap length in scaffolds 3
23 Average gap length in scaffolds 1.00 26 Average gap length in scaffolds 1.00
24 Gap N50 in scaffolds 1 27 Gap N50 in scaffolds 1
25 Gap auN in scaffolds 1.00 28 Gap auN in scaffolds 1.00
26 Gap L50 in scaffolds 2 29 Gap L50 in scaffolds 2
27 Largest gap in scaffolds 1 30 Largest gap in scaffolds 1
31 Smallest gap in scaffolds 1
28 Base composition (A:C:G:T) 102144:112550:104859:100020 32 Base composition (A:C:G:T) 102144:112550:104859:100020
29 GC content % 51.82 33 GC content % 51.82
30 # soft-masked bases 0 34 # soft-masked bases 0
31 # segments 6 35 # segments 6
32 Total segment length 419573 36 Total segment length 419573