Mercurial > repos > bgruening > gfastats

comparison test-data/test_07_stats.tabular @ 3:8ccbf07a5433 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
author bgruening
date Mon, 11 Jul 2022 14:13:13 +0000
parents 2b8b4cacb83d
children 3fba9c77550a
comparison
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2:ad1149b4f795 3:8ccbf07a5433
4 Average scaffold length: 139858.67 4 Average scaffold length: 139858.67
5 Scaffold N50: 417540 5 Scaffold N50: 417540
6 Scaffold auN: 415520.91 6 Scaffold auN: 415520.91
7 Scaffold L50: 1 7 Scaffold L50: 1
8 Largest scaffold: 417540 8 Largest scaffold: 417540
9 Smallest scaffold: 356
10 # contigs: 6
9 Total contig length: 419573 11 Total contig length: 419573
10 Average contig length: 69928.83 12 Average contig length: 69928.83
11 Contig N50: 416949 13 Contig N50: 416949
12 Contig auN: 414345.81 14 Contig auN: 414345.81
13 Contig L50: 1 15 Contig L50: 1
14 Largest contig: 416949 16 Largest contig: 416949
17 Smallest contig: 101
15 # gaps in scaffolds: 3 18 # gaps in scaffolds: 3
16 Total gap length in scaffolds: 3 19 Total gap length in scaffolds: 3
17 Average gap length in scaffolds: 1.00 20 Average gap length in scaffolds: 1.00
18 Gap N50 in scaffolds: 1 21 Gap N50 in scaffolds: 1
19 Gap auN in scaffolds: 1.00 22 Gap auN in scaffolds: 1.00
20 Gap L50 in scaffolds: 2 23 Gap L50 in scaffolds: 2
21 Largest gap in scaffolds: 1 24 Largest gap in scaffolds: 1
25 Smallest gap in scaffolds: 1
22 Base composition (A:C:G:T): 102144:112550:104859:100020 26 Base composition (A:C:G:T): 102144:112550:104859:100020
23 GC content %: 51.82 27 GC content %: 51.82
24 # soft-masked bases: 0 28 # soft-masked bases: 0
25 # segments: 6 29 # segments: 6
26 Total segment length: 419573 30 Total segment length: 419573