Mercurial > repos > bgruening > gfastats
view test-data/test_04_stats.tabular @ 8:6ec1b853c8fd draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 53b8f235e87107323cc6e636cc0d069551a44dec
| author | bgruening |
|---|---|
| date | Thu, 10 Oct 2024 09:58:15 +0000 |
| parents | 8ccbf07a5433 |
| children |
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Expected genome size 600000 # scaffolds 3 Total scaffold length 419576 Average scaffold length 139858.67 Scaffold N50 417540 Scaffold auN 415520.91 Scaffold L50 1 Scaffold NG50 417540 Scaffold auNG 290571.00 Scaffold LG50 1 Largest scaffold 417540 Smallest scaffold 356 # contigs 6 Total contig length 419573 Average contig length 69928.83 Contig N50 416949 Contig auN 414345.81 Contig L50 1 Contig NG50 416949 Contig auNG 289747.19 Contig LG50 1 Largest contig 416949 Smallest contig 101 # gaps in scaffolds 3 Total gap length in scaffolds 3 Average gap length in scaffolds 1.00 Gap N50 in scaffolds 1 Gap auN in scaffolds 1.00 Gap L50 in scaffolds 2 Largest gap in scaffolds 1 Smallest gap in scaffolds 1 Base composition (A:C:G:T) 102144:112550:104859:100020 GC content % 51.82 # soft-masked bases 0 # segments 6 Total segment length 419573 Average segment length 69928.83 # gaps 3 # paths 3 Scaffold N10 417540 Scaffold N20 417540 Scaffold N30 417540 Scaffold N40 417540 Scaffold N50 417540 Scaffold N60 417540 Scaffold N70 417540 Scaffold N80 417540 Scaffold N90 417540 Scaffold N100 356 Scaffold L10 1 Scaffold L20 1 Scaffold L30 1 Scaffold L40 1 Scaffold L50 1 Scaffold L60 1 Scaffold L70 1 Scaffold L80 1 Scaffold L90 1 Scaffold L100 3 Scaffold NG10 417540 Scaffold NG20 417540 Scaffold NG30 417540 Scaffold NG40 417540 Scaffold NG50 417540 Scaffold NG60 417540 Scaffold NG70 0 Scaffold NG80 0 Scaffold NG90 0 Scaffold NG100 0 Scaffold LG10 1 Scaffold LG20 1 Scaffold LG30 1 Scaffold LG40 1 Scaffold LG50 1 Scaffold LG60 1 Scaffold LG70 0 Scaffold LG80 0 Scaffold LG90 0 Scaffold LG100 0 Contig N10 416949 Contig N20 416949 Contig N30 416949 Contig N40 416949 Contig N50 416949 Contig N60 416949 Contig N70 416949 Contig N80 416949 Contig N90 416949 Contig N100 101 Contig L10 1 Contig L20 1 Contig L30 1 Contig L40 1 Contig L50 1 Contig L60 1 Contig L70 1 Contig L80 1 Contig L90 1 Contig L100 6 Contig NG10 416949 Contig NG20 416949 Contig NG30 416949 Contig NG40 416949 Contig NG50 416949 Contig NG60 416949 Contig NG70 0 Contig NG80 0 Contig NG90 0 Contig NG100 0 Contig LG10 1 Contig LG20 1 Contig LG30 1 Contig LG40 1 Contig LG50 1 Contig LG60 1 Contig LG70 0 Contig LG80 0 Contig LG90 0 Contig LG100 0 Gap N10 1 Gap N20 1 Gap N30 1 Gap N40 1 Gap N50 1 Gap N60 1 Gap N70 1 Gap N80 1 Gap N90 1 Gap N100 1 Gap L10 1 Gap L20 1 Gap L30 1 Gap L40 2 Gap L50 2 Gap L60 2 Gap L70 3 Gap L80 3 Gap L90 3 Gap L100 3