# HG changeset patch
# User bgruening
# Date 1670242831 0
# Node ID 690c2caa367ee78f5cc2d411fef42cdca4dd355a
# Parent  5127a713de8341f3dc69eb23788a40d89ea0784c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 10ccc47885ce71e602d66e157bd475f1facbd042

diff -r 5127a713de83 -r 690c2caa367e gfastats.xml
--- a/gfastats.xml	Fri Sep 30 19:23:58 2022 +0000
+++ b/gfastats.xml	Mon Dec 05 12:20:31 2022 +0000
@@ -33,6 +33,7 @@
             #if $mode_condition.homopolymer_compress
                 --homopolymer-compress $mode_condition.homopolymer_compress
             #end if
+            $mode_condition.discover_paths
             -o dataset.$mode_condition.output_condition.out_format
             #if $mode_condition.output_condition.out_format == 'fasta'
                 #if $mode_condition.output_condition.line_length
@@ -129,7 +130,9 @@
                     <when value="fastq.gz"/>
                     <when value="gfa"/>
                     <when value="gfa.gz"/>
-                </conditional>
+		</conditional>
+                <param argument="--discover-paths" type="boolean" truevalue="--discover-paths" falsevalue="" checked="false" label="Generates the initial set of paths" help="In the graph space an assembly 
+                    is a collection of segment and edges/gaps between these segments. A path defines a potential walk through the segments and edges/gaps that corresponds to a hypothesis of the actual linear sequence" />
                 <param argument="--sort" type="select" label="Sort sequences" help="Specify how to sort the sequences. Ascending/descending used the sequence/path header.">
                     <option value="" selected="true">Disabled</option>
                     <option value="ascending">Ascending</option>
diff -r 5127a713de83 -r 690c2caa367e macros.xml
--- a/macros.xml	Fri Sep 30 19:23:58 2022 +0000
+++ b/macros.xml	Mon Dec 05 12:20:31 2022 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.3.5</token>
-    <token name="@SUFFIX_VERSION@">0</token>
+    <token name="@SUFFIX_VERSION@">2</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">gfastats</requirement>