Mercurial > repos > bgruening > gfstats
annotate test-data/test_07_stats.tabular @ 0:5f250ffcb1af draft default tip
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
author | bgruening |
---|---|
date | Tue, 08 Mar 2022 21:49:13 +0000 |
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children |
rev | line source |
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0
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
1 +++Summary+++: |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
2 # scaffolds: 3 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
3 Total scaffold length: 419576 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
4 Average scaffold length: 139858.67 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
5 Scaffold N50: 417540 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
6 Scaffold auN: 415520.91 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
7 Scaffold L50: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
8 Largest scaffold: 417540 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
9 # contigs: 6 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
10 Total contig length: 419573 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
11 Average contig length: 69928.83 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
12 Contig N50: 416949 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
13 Contig auN: 414345.81 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
14 Contig L50: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
15 Largest contig: 416949 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
16 # gaps: 3 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
17 Total gap length: 3 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
18 Average gap length: 1.00 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
19 Gap N50: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
20 Gap auN: 1.00 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
21 Gap L50: 2 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
22 Largest gap: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
23 Base composition (ACGT): 102144, 112550, 104859, 100020 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
24 GC content %: 51.82 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
25 # soft-masked bases: 0 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
26 # paths: 3 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
27 Scaffold N10: 417540 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
28 Scaffold N20: 417540 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
29 Scaffold N30: 417540 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
30 Scaffold N40: 417540 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
31 Scaffold N50: 417540 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
32 Scaffold N60: 417540 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
33 Scaffold N70: 417540 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
34 Scaffold N80: 417540 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
35 Scaffold N90: 417540 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
36 Scaffold N100: 356 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
37 Scaffold L10: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
38 Scaffold L20: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
39 Scaffold L30: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
40 Scaffold L40: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
41 Scaffold L50: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
42 Scaffold L60: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
43 Scaffold L70: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
44 Scaffold L80: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
45 Scaffold L90: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
46 Scaffold L100: 3 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
47 Contig N10: 416949 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
48 Contig N20: 416949 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
49 Contig N30: 416949 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
50 Contig N40: 416949 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
51 Contig N50: 416949 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
52 Contig N60: 416949 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
53 Contig N70: 416949 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
54 Contig N80: 416949 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
55 Contig N90: 416949 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
56 Contig N100: 101 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
57 Contig L10: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
58 Contig L20: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
59 Contig L30: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
60 Contig L40: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
61 Contig L50: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
62 Contig L60: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
63 Contig L70: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
64 Contig L80: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
65 Contig L90: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
66 Contig L100: 6 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
67 Gap N10: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
68 Gap N20: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
69 Gap N30: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
70 Gap N40: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
71 Gap N50: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
72 Gap N60: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
73 Gap N70: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
74 Gap N80: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
75 Gap N90: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
76 Gap N100: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
77 Gap L10: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
78 Gap L20: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
79 Gap L30: 1 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
80 Gap L40: 2 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
81 Gap L50: 2 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
82 Gap L60: 2 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
83 Gap L70: 3 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
84 Gap L80: 3 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
85 Gap L90: 3 |
5f250ffcb1af
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
bgruening
parents:
diff
changeset
|
86 Gap L100: 3 |