comparison glimmer_glimmer_to_gff.py @ 1:239a68a49505 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/glimmer commit a4b0969b33a68a0ea9ba12291f6694aec24f13ed

0:5631611d5bb8

    for line in input_file:
        line = line.strip()
        if line[0] == '>':
            header = line[1:]
        else:
            (id, start, end, frame, score) = re.split('\s+', line)
            if int(end) > int(start):
                strand = '+'
            else:
                strand = '-'
                (start, end) = (end, start)

1:239a68a49505

    for line in input_file:
        line = line.strip()
        if line[0] == '>':
            header = line[1:]
        else:
            (id, start, end, frame, score) = re.split(r'\s+', line)
            if int(end) > int(start):
                strand = '+'
            else:
                strand = '-'
                (start, end) = (end, start)