Mercurial > repos > bgruening > glimmer_extract
view test-data/test.gbk @ 0:5631611d5bb8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/glimmer commit 37388949e348d221170659bbee547bf4ac67ef1a
author | bgruening |
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date | Tue, 28 Nov 2017 10:12:15 -0500 |
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LOCUS contig1 350 bp DNA linear 21-MAR-2017 DEFINITION Genus species strain strain. ACCESSION VERSION KEYWORDS . SOURCE Genus species ORGANISM Genus species Unclassified. COMMENT Annotated using prokka 1.12 from https://github.com/tseemann/prokka. FEATURES Location/Qualifiers source 1..350 /organism="Genus species" /mol_type="genomic DNA" /strain="strain" ORIGIN 1 gagttttatc gcttccatga cgcagaagtt aacactttcg gatatttctg atgagtcgaa 61 aaattatctt gataaagcag gaattactac tgcttgttta cgaattaaat cgaagtggac 121 tgctggcgga aaatgagaaa attcgaccta tccttgcgca gctcgagaag ctcttacttt 181 gcgacctttc gccatcaact aacgattctg tcaaaaactg acgcgttgga tgaggagaag 241 tggcttaata tgcttggcac gttcgtcaag gactggttta gatatgagtc acattttgtt 301 catggtagag attctcttgt tgacatttta aaagagcgtg gattactatc // LOCUS contig2 840 bp DNA linear 21-MAR-2017 DEFINITION Genus species strain strain. ACCESSION VERSION KEYWORDS . SOURCE Genus species ORGANISM Genus species Unclassified. COMMENT Annotated using prokka 1.12 from https://github.com/tseemann/prokka. FEATURES Location/Qualifiers source 1..840 /organism="Genus species" /mol_type="genomic DNA" /strain="strain" CDS 40..498 /locus_tag="PROKKA_00001" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 /product="hypothetical protein" /translation="MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWI ATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAE FTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM" CDS 498..614 /locus_tag="PROKKA_00002" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 /product="hypothetical protein" /translation="MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF" ORIGIN 1 tgagtccgat gctgttcaac cactaatagg taagaaatca tgagtcaagt tactgaacaa 61 tccgtacgtt tccagaccgc tttggcctct attaagctca ttcaggcttc tgccgttttg 121 gatttaaccg aagatgattt cgattttctg acgagtaaca aagtttggat tgctactgac 181 cgctctcgtg ctcgtcgctg cgttgaggct tgcgtttatg gtacgctgga ctttgtggga 241 taccctcgct ttcctgctcc tgttgagttt attgctgccg tcattgctta ttatgttcat 301 cccgtcaaca ttcaaacggc ctgtctcatc atggaaggcg ctgaatttac ggaaaacatt 361 attaatggcg tcgagcgtcc ggttaaagcc gctgaattgt tcgcgtttac cttgcgtgta 421 cgcgcaggaa acactgacgt tcttactgac gcagaagaaa acgtgcgtca aaaattacgt 481 gcggaaggag tgatgtaatg tctaaaggta aaaaacgttc tggcgctcgc cctggtcgtc 541 cgcagccgtt gcgaggtact aaaggcaagc gtaaaggcgc tcgtctttgg tatgtaggtg 601 gtcaacaatt ttaattgcag gggcttcggc cccttacttg aggataaatt atgtctaata 661 ttcaaactgg cgccgagcgt atgccgcatg acctttccca tcttggcttc cttgctggtc 721 agattggtcg tcttattacc atttcaacta ctccggttat cgctggcgac tccttcgaga 781 tggacgccgt tggcgctctc cgtctttctc cattgcgtcg tggccttgct attgactcta // LOCUS contig3 210 bp DNA linear 21-MAR-2017 DEFINITION Genus species strain strain. ACCESSION VERSION KEYWORDS . SOURCE Genus species ORGANISM Genus species Unclassified. COMMENT Annotated using prokka 1.12 from https://github.com/tseemann/prokka. FEATURES Location/Qualifiers source 1..210 /organism="Genus species" /mol_type="genomic DNA" /strain="strain" ORIGIN 1 ctgtagacat ttttactttt tatgtccctc atcgtcacgt ttatggtgaa cagtggatta 61 agttcatgaa ggatggtgtt aatgccactc ctctcccgac tgttaacact actggttata 121 ttgaccatgc cgcttttctt ggcacgatta accctgatac caataaaatc cctaagcatt 181 tgtttcaggg ttatttgaat atctataaca // LOCUS contig4 1260 bp DNA linear 21-MAR-2017 DEFINITION Genus species strain strain. ACCESSION VERSION KEYWORDS . SOURCE Genus species ORGANISM Genus species Unclassified. COMMENT Annotated using prokka 1.12 from https://github.com/tseemann/prokka. FEATURES Location/Qualifiers source 1..1260 /organism="Genus species" /mol_type="genomic DNA" /strain="strain" CDS 21..884 /locus_tag="PROKKA_00003" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 /product="hypothetical protein" /translation="MPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQM TTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSN LWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSY VSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRN LPTTRDSIMTS" ORIGIN 1 actattttaa agcgccgtgg atgcctgacc gtaccgaggc taaccctaat gagcttaatc 61 aagatgatgc tcgttatggt ttccgttgct gccatctcaa aaacatttgg actgctccgc 121 ttcctcctga gactgagctt tctcgccaaa tgacgacttc taccacatct attgacatta 181 tgggtctgca agctgcttat gctaatttgc atactgacca agaacgtgat tacttcatgc 241 agcgttacca tgatgttatt tcttcatttg gaggtaaaac ctcttatgac gctgacaacc 301 gtcctttact tgtcatgcgc tctaatctct gggcatctgg ctatgatgtt gatggaactg 361 accaaacgtc gttaggccag ttttctggtc gtgttcaaca gacctataaa cattctgtgc 421 cgcgtttctt tgttcctgag catggcacta tgtttactct tgcgcttgtt cgttttccgc 481 ctactgcgac taaagagatt cagtacctta acgctaaagg tgctttgact tataccgata 541 ttgctggcga ccctgttttg tatggcaact tgccgccgcg tgaaatttct atgaaggatg 601 ttttccgttc tggtgattcg tctaagaagt ttaagattgc tgagggtcag tggtatcgtt 661 atgcgccttc gtatgtttct cctgcttatc accttcttga aggcttccca ttcattcagg 721 aaccgccttc tggtgatttg caagaacgcg tacttattcg ccaccatgat tatgaccagt 781 gtttccagtc cgttcagttg ttgcagtgga atagtcaggt taaatttaat gtgaccgttt 841 atcgcaatct gccgaccact cgcgattcaa tcatgacttc gtgataaaag attgagtgtg 901 aggttataac gccgaagcgg taaaaatttt aatttttgcc gctgaggggt tgaccaagcg 961 aagcgcggta ggttttctgc ttaggagttt aatcatgttt cagactttta tttctcgcca 1021 taattcaaac tttttttctg ataagctggt tctcacttct gttactccag cttcttcggc 1081 acctgtttta cagacaccta aagctacatc gtcaacgtta tattttgata gtttgacggt 1141 taatgctggt aatggtggtt ttcttcattg cattcagatg gatacatctg tcaacgccgc 1201 taatcaggtt gtttctgttg gtgctgatat tgcttttgat gccgacccta aattttttgc // LOCUS contig5 490 bp DNA linear 21-MAR-2017 DEFINITION Genus species strain strain. ACCESSION VERSION KEYWORDS . SOURCE Genus species ORGANISM Genus species Unclassified. COMMENT Annotated using prokka 1.12 from https://github.com/tseemann/prokka. FEATURES Location/Qualifiers source 1..490 /organism="Genus species" /mol_type="genomic DNA" /strain="strain" CDS 275..406 /locus_tag="PROKKA_00004" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 /product="hypothetical protein" /translation="MVLLLAVLLLLLLVAPCLNCLEAVKKPPPVAFKVMCLLPITIL" ORIGIN 1 ctgtttggtt cgctttgagt cttcttcggt tccgactacc ctcccgactg cctatgatgt 61 ttatcctttg aatggtcgcc atgatggtgg ttattatacc gtcaaggact gtgtgactat 121 tgacgtcctt ccccgtacgc cgggcaataa cgtttatgtt ggtttcatgg tttggtctaa 181 ctttaccgct actaaatgcc gcggattggt ttcgctgaat caggttatta aagagattat 241 ttgtctccag ccacttaagt gaggtgattt atgtttggtg ctattgctgg cggtattgct 301 tctgctcttg ctggtggcgc catgtctaaa ttgtttggag gcggtcaaaa agccgcctcc 361 ggtggcattc aaggtgatgt gcttgctacc gataacaata ctgtaggcat gggtgatgct 421 ggtattaaat ctgccattca aggctctaat gttcctaacc ctgatgaggc cgcccctagt 481 tttgtttctg // LOCUS contig6 1960 bp DNA linear 21-MAR-2017 DEFINITION Genus species strain strain. ACCESSION VERSION KEYWORDS . SOURCE Genus species ORGANISM Genus species Unclassified. COMMENT Annotated using prokka 1.12 from https://github.com/tseemann/prokka. FEATURES Location/Qualifiers source 1..1960 /organism="Genus species" /mol_type="genomic DNA" /strain="strain" CDS 6..767 /locus_tag="PROKKA_00005" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 /product="hypothetical protein" /translation="MAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKDTRD YLAAAFPELNAWERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAEMQNETQKEIA GIQSATSRQNTKDQVYAQNEMLAYQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQ AQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASG VVDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK" ORIGIN 1 gtgctatggc taaagctggt aaaggacttc ttgaaggtac gttgcaggct ggcacttctg 61 ccgtttctga taagttgctt gatttggttg gacttggtgg caagtctgcc gctgataaag 121 gaaaggatac tcgtgattat cttgctgctg catttcctga gcttaatgct tgggagcgtg 181 ctggtgctga tgcttcctct gctggtatgg ttgacgccgg atttgagaat caaaaagagc 241 ttactaaaat gcaactggac aatcagaaag agattgccga gatgcaaaat gagactcaaa 301 aagagattgc tggcattcag tcggcgactt cacgccagaa tacgaaagac caggtatatg 361 cacaaaatga gatgcttgct tatcaacaga aggagtctac tgctcgcgtt gcgtctatta 421 tggaaaacac caatctttcc aagcaacagc aggtttccga gattatgcgc caaatgctta 481 ctcaagctca aacggctggt cagtatttta ccaatgacca aatcaaagaa atgactcgca 541 aggttagtgc tgaggttgac ttagttcatc agcaaacgca gaatcagcgg tatggctctt 601 ctcatattgg cgctactgca aaggatattt ctaatgtcgt cactgatgct gcttctggtg 661 tggttgatat ttttcatggt attgataaag ctgttgccga tacttggaac aatttctgga 721 aagacggtaa agctgatggt attggctcta atttgtctag gaaataaccg tcaggattga 781 caccctccca attgtatgtt ttcatgcctc caaatcttgg aggctttttt atggttcgtt 841 cttattaccc ttctgaatgt cacgctgatt attttgactt tgagcgtatc gaggctctta 901 aacctgctat tgaggcttgt ggcatttcta ctctttctca atccccaatg cttggcttcc 961 ataagcagat ggataaccgc atcaagctct tggaagagat tctgtctttt cgtatgcagg 1021 gcgttgagtt cgataatggt gatatgtatg ttgacggcca taaggctgct tctgacgttc 1081 gtgatgagtt tgtatctgtt actgagaagt taatggatga attggcacaa tgctacaatg 1141 tgctccccca acttgatatt aataacacta tagaccaccg ccccgaaggg gacgaaaaat 1201 ggtttttaga gaacgagaag acggttacgc agttttgccg caagctggct gctgaacgcc 1261 ctcttaagga tattcgcgat gagtataatt accccaaaaa gaaaggtatt aaggatgagt 1321 gttcaagatt gctggaggcc tccactatga aatcgcgtag aggctttgct attcagcgtt 1381 tgatgaatgc aatgcgacag gctcatgctg atggttggtt tatcgttttt gacactctca 1441 cgttggctga cgaccgatta gaggcgtttt atgataatcc caatgctttg cgtgactatt 1501 ttcgtgatat tggtcgtatg gttcttgctg ccgagggtcg caaggctaat gattcacacg 1561 ccgactgcta tcagtatttt tgtgtgcctg agtatggtac agctaatggc cgtcttcatt 1621 tccatgcggt gcactttatg cggacacttc ctacaggtag cgttgaccct aattttggtc 1681 gtcgggtacg caatcgccgc cagttaaata gcttgcaaaa tacgtggcct tatggttaca 1741 gtatgcccat cgcagttcgc tacacgcagg acgctttttc acgttctggt tggttgtggc 1801 ctgttgatgc taaaggtgag ccgcttaaag ctaccagtta tatggctgtt ggtttctatg 1861 tggctaaata cgttaacaaa aagtcagata tggaccttgc tgctaaaggt ctaggagcta 1921 aagaatggaa caactcacta aaaaccaagc tgtcgctact // LOCUS contig7 276 bp DNA linear 21-MAR-2017 DEFINITION Genus species strain strain. ACCESSION VERSION KEYWORDS . SOURCE Genus species ORGANISM Genus species Unclassified. COMMENT Annotated using prokka 1.12 from https://github.com/tseemann/prokka. FEATURES Location/Qualifiers source 1..276 /organism="Genus species" /mol_type="genomic DNA" /strain="strain" ORIGIN 1 tcccaagaag ctgttcagaa tcagaatgag ccgcaacttc gggatgaaaa tgctcacaat 61 gacaaatctg tccacggagt gcttaatcca acttaccaag ctgggttacg acgcgacgcc 121 gttcaaccag atattgaagc agaacgcaaa aagagagatg agattgaggc tgggaaaagt 181 tactgtagcc gacgttttgg cggcgcaacc tgtgacgaca aatctgctca aatttatgcg 241 cgcttcgata aaaatgattg gcgtatccaa cctgca //