Mercurial > repos > bgruening > glimmer_glimmer_to_gff

comparison test-data/test.gbk @ 0:650106d2da39 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/glimmer commit 37388949e348d221170659bbee547bf4ac67ef1a
author bgruening
date Tue, 28 Nov 2017 10:09:27 -0500
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-1:000000000000 0:650106d2da39
1 LOCUS contig1 350 bp DNA linear 21-MAR-2017
2 DEFINITION Genus species strain strain.
3 ACCESSION
4 VERSION
5 KEYWORDS .
6 SOURCE Genus species
7 ORGANISM Genus species
8 Unclassified.
9 COMMENT Annotated using prokka 1.12 from
10 https://github.com/tseemann/prokka.
11 FEATURES Location/Qualifiers
12 source 1..350
13 /organism="Genus species"
14 /mol_type="genomic DNA"
15 /strain="strain"
16 ORIGIN
17 1 gagttttatc gcttccatga cgcagaagtt aacactttcg gatatttctg atgagtcgaa
18 61 aaattatctt gataaagcag gaattactac tgcttgttta cgaattaaat cgaagtggac
19 121 tgctggcgga aaatgagaaa attcgaccta tccttgcgca gctcgagaag ctcttacttt
20 181 gcgacctttc gccatcaact aacgattctg tcaaaaactg acgcgttgga tgaggagaag
21 241 tggcttaata tgcttggcac gttcgtcaag gactggttta gatatgagtc acattttgtt
22 301 catggtagag attctcttgt tgacatttta aaagagcgtg gattactatc
23 //
24 LOCUS contig2 840 bp DNA linear 21-MAR-2017
25 DEFINITION Genus species strain strain.
26 ACCESSION
27 VERSION
28 KEYWORDS .
29 SOURCE Genus species
30 ORGANISM Genus species
31 Unclassified.
32 COMMENT Annotated using prokka 1.12 from
33 https://github.com/tseemann/prokka.
34 FEATURES Location/Qualifiers
35 source 1..840
36 /organism="Genus species"
37 /mol_type="genomic DNA"
38 /strain="strain"
39 CDS 40..498
40 /locus_tag="PROKKA_00001"
41 /inference="ab initio prediction:Prodigal:2.6"
42 /codon_start=1
43 /transl_table=11
44 /product="hypothetical protein"
45 /translation="MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWI
46 ATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAE
47 FTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM"
48 CDS 498..614
49 /locus_tag="PROKKA_00002"
50 /inference="ab initio prediction:Prodigal:2.6"
51 /codon_start=1
52 /transl_table=11
53 /product="hypothetical protein"
54 /translation="MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF"
55 ORIGIN
56 1 tgagtccgat gctgttcaac cactaatagg taagaaatca tgagtcaagt tactgaacaa
57 61 tccgtacgtt tccagaccgc tttggcctct attaagctca ttcaggcttc tgccgttttg
58 121 gatttaaccg aagatgattt cgattttctg acgagtaaca aagtttggat tgctactgac
59 181 cgctctcgtg ctcgtcgctg cgttgaggct tgcgtttatg gtacgctgga ctttgtggga
60 241 taccctcgct ttcctgctcc tgttgagttt attgctgccg tcattgctta ttatgttcat
61 301 cccgtcaaca ttcaaacggc ctgtctcatc atggaaggcg ctgaatttac ggaaaacatt
62 361 attaatggcg tcgagcgtcc ggttaaagcc gctgaattgt tcgcgtttac cttgcgtgta
63 421 cgcgcaggaa acactgacgt tcttactgac gcagaagaaa acgtgcgtca aaaattacgt
64 481 gcggaaggag tgatgtaatg tctaaaggta aaaaacgttc tggcgctcgc cctggtcgtc
65 541 cgcagccgtt gcgaggtact aaaggcaagc gtaaaggcgc tcgtctttgg tatgtaggtg
66 601 gtcaacaatt ttaattgcag gggcttcggc cccttacttg aggataaatt atgtctaata
67 661 ttcaaactgg cgccgagcgt atgccgcatg acctttccca tcttggcttc cttgctggtc
68 721 agattggtcg tcttattacc atttcaacta ctccggttat cgctggcgac tccttcgaga
69 781 tggacgccgt tggcgctctc cgtctttctc cattgcgtcg tggccttgct attgactcta
70 //
71 LOCUS contig3 210 bp DNA linear 21-MAR-2017
72 DEFINITION Genus species strain strain.
73 ACCESSION
74 VERSION
75 KEYWORDS .
76 SOURCE Genus species
77 ORGANISM Genus species
78 Unclassified.
79 COMMENT Annotated using prokka 1.12 from
80 https://github.com/tseemann/prokka.
81 FEATURES Location/Qualifiers
82 source 1..210
83 /organism="Genus species"
84 /mol_type="genomic DNA"
85 /strain="strain"
86 ORIGIN
87 1 ctgtagacat ttttactttt tatgtccctc atcgtcacgt ttatggtgaa cagtggatta
88 61 agttcatgaa ggatggtgtt aatgccactc ctctcccgac tgttaacact actggttata
89 121 ttgaccatgc cgcttttctt ggcacgatta accctgatac caataaaatc cctaagcatt
90 181 tgtttcaggg ttatttgaat atctataaca
91 //
92 LOCUS contig4 1260 bp DNA linear 21-MAR-2017
93 DEFINITION Genus species strain strain.
94 ACCESSION
95 VERSION
96 KEYWORDS .
97 SOURCE Genus species
98 ORGANISM Genus species
99 Unclassified.
100 COMMENT Annotated using prokka 1.12 from
101 https://github.com/tseemann/prokka.
102 FEATURES Location/Qualifiers
103 source 1..1260
104 /organism="Genus species"
105 /mol_type="genomic DNA"
106 /strain="strain"
107 CDS 21..884
108 /locus_tag="PROKKA_00003"
109 /inference="ab initio prediction:Prodigal:2.6"
110 /codon_start=1
111 /transl_table=11
112 /product="hypothetical protein"
113 /translation="MPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQM
114 TTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSN
115 LWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI
116 QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSY
117 VSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRN
118 LPTTRDSIMTS"
119 ORIGIN
120 1 actattttaa agcgccgtgg atgcctgacc gtaccgaggc taaccctaat gagcttaatc
121 61 aagatgatgc tcgttatggt ttccgttgct gccatctcaa aaacatttgg actgctccgc
122 121 ttcctcctga gactgagctt tctcgccaaa tgacgacttc taccacatct attgacatta
123 181 tgggtctgca agctgcttat gctaatttgc atactgacca agaacgtgat tacttcatgc
124 241 agcgttacca tgatgttatt tcttcatttg gaggtaaaac ctcttatgac gctgacaacc
125 301 gtcctttact tgtcatgcgc tctaatctct gggcatctgg ctatgatgtt gatggaactg
126 361 accaaacgtc gttaggccag ttttctggtc gtgttcaaca gacctataaa cattctgtgc
127 421 cgcgtttctt tgttcctgag catggcacta tgtttactct tgcgcttgtt cgttttccgc
128 481 ctactgcgac taaagagatt cagtacctta acgctaaagg tgctttgact tataccgata
129 541 ttgctggcga ccctgttttg tatggcaact tgccgccgcg tgaaatttct atgaaggatg
130 601 ttttccgttc tggtgattcg tctaagaagt ttaagattgc tgagggtcag tggtatcgtt
131 661 atgcgccttc gtatgtttct cctgcttatc accttcttga aggcttccca ttcattcagg
132 721 aaccgccttc tggtgatttg caagaacgcg tacttattcg ccaccatgat tatgaccagt
133 781 gtttccagtc cgttcagttg ttgcagtgga atagtcaggt taaatttaat gtgaccgttt
134 841 atcgcaatct gccgaccact cgcgattcaa tcatgacttc gtgataaaag attgagtgtg
135 901 aggttataac gccgaagcgg taaaaatttt aatttttgcc gctgaggggt tgaccaagcg
136 961 aagcgcggta ggttttctgc ttaggagttt aatcatgttt cagactttta tttctcgcca
137 1021 taattcaaac tttttttctg ataagctggt tctcacttct gttactccag cttcttcggc
138 1081 acctgtttta cagacaccta aagctacatc gtcaacgtta tattttgata gtttgacggt
139 1141 taatgctggt aatggtggtt ttcttcattg cattcagatg gatacatctg tcaacgccgc
140 1201 taatcaggtt gtttctgttg gtgctgatat tgcttttgat gccgacccta aattttttgc
141 //
142 LOCUS contig5 490 bp DNA linear 21-MAR-2017
143 DEFINITION Genus species strain strain.
144 ACCESSION
145 VERSION
146 KEYWORDS .
147 SOURCE Genus species
148 ORGANISM Genus species
149 Unclassified.
150 COMMENT Annotated using prokka 1.12 from
151 https://github.com/tseemann/prokka.
152 FEATURES Location/Qualifiers
153 source 1..490
154 /organism="Genus species"
155 /mol_type="genomic DNA"
156 /strain="strain"
157 CDS 275..406
158 /locus_tag="PROKKA_00004"
159 /inference="ab initio prediction:Prodigal:2.6"
160 /codon_start=1
161 /transl_table=11
162 /product="hypothetical protein"
163 /translation="MVLLLAVLLLLLLVAPCLNCLEAVKKPPPVAFKVMCLLPITIL"
164 ORIGIN
165 1 ctgtttggtt cgctttgagt cttcttcggt tccgactacc ctcccgactg cctatgatgt
166 61 ttatcctttg aatggtcgcc atgatggtgg ttattatacc gtcaaggact gtgtgactat
167 121 tgacgtcctt ccccgtacgc cgggcaataa cgtttatgtt ggtttcatgg tttggtctaa
168 181 ctttaccgct actaaatgcc gcggattggt ttcgctgaat caggttatta aagagattat
169 241 ttgtctccag ccacttaagt gaggtgattt atgtttggtg ctattgctgg cggtattgct
170 301 tctgctcttg ctggtggcgc catgtctaaa ttgtttggag gcggtcaaaa agccgcctcc
171 361 ggtggcattc aaggtgatgt gcttgctacc gataacaata ctgtaggcat gggtgatgct
172 421 ggtattaaat ctgccattca aggctctaat gttcctaacc ctgatgaggc cgcccctagt
173 481 tttgtttctg
174 //
175 LOCUS contig6 1960 bp DNA linear 21-MAR-2017
176 DEFINITION Genus species strain strain.
177 ACCESSION
178 VERSION
179 KEYWORDS .
180 SOURCE Genus species
181 ORGANISM Genus species
182 Unclassified.
183 COMMENT Annotated using prokka 1.12 from
184 https://github.com/tseemann/prokka.
185 FEATURES Location/Qualifiers
186 source 1..1960
187 /organism="Genus species"
188 /mol_type="genomic DNA"
189 /strain="strain"
190 CDS 6..767
191 /locus_tag="PROKKA_00005"
192 /inference="ab initio prediction:Prodigal:2.6"
193 /codon_start=1
194 /transl_table=11
195 /product="hypothetical protein"
196 /translation="MAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKDTRD
197 YLAAAFPELNAWERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAEMQNETQKEIA
198 GIQSATSRQNTKDQVYAQNEMLAYQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQ
199 AQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASG
200 VVDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK"
201 ORIGIN
202 1 gtgctatggc taaagctggt aaaggacttc ttgaaggtac gttgcaggct ggcacttctg
203 61 ccgtttctga taagttgctt gatttggttg gacttggtgg caagtctgcc gctgataaag
204 121 gaaaggatac tcgtgattat cttgctgctg catttcctga gcttaatgct tgggagcgtg
205 181 ctggtgctga tgcttcctct gctggtatgg ttgacgccgg atttgagaat caaaaagagc
206 241 ttactaaaat gcaactggac aatcagaaag agattgccga gatgcaaaat gagactcaaa
207 301 aagagattgc tggcattcag tcggcgactt cacgccagaa tacgaaagac caggtatatg
208 361 cacaaaatga gatgcttgct tatcaacaga aggagtctac tgctcgcgtt gcgtctatta
209 421 tggaaaacac caatctttcc aagcaacagc aggtttccga gattatgcgc caaatgctta
210 481 ctcaagctca aacggctggt cagtatttta ccaatgacca aatcaaagaa atgactcgca
211 541 aggttagtgc tgaggttgac ttagttcatc agcaaacgca gaatcagcgg tatggctctt
212 601 ctcatattgg cgctactgca aaggatattt ctaatgtcgt cactgatgct gcttctggtg
213 661 tggttgatat ttttcatggt attgataaag ctgttgccga tacttggaac aatttctgga
214 721 aagacggtaa agctgatggt attggctcta atttgtctag gaaataaccg tcaggattga
215 781 caccctccca attgtatgtt ttcatgcctc caaatcttgg aggctttttt atggttcgtt
216 841 cttattaccc ttctgaatgt cacgctgatt attttgactt tgagcgtatc gaggctctta
217 901 aacctgctat tgaggcttgt ggcatttcta ctctttctca atccccaatg cttggcttcc
218 961 ataagcagat ggataaccgc atcaagctct tggaagagat tctgtctttt cgtatgcagg
219 1021 gcgttgagtt cgataatggt gatatgtatg ttgacggcca taaggctgct tctgacgttc
220 1081 gtgatgagtt tgtatctgtt actgagaagt taatggatga attggcacaa tgctacaatg
221 1141 tgctccccca acttgatatt aataacacta tagaccaccg ccccgaaggg gacgaaaaat
222 1201 ggtttttaga gaacgagaag acggttacgc agttttgccg caagctggct gctgaacgcc
223 1261 ctcttaagga tattcgcgat gagtataatt accccaaaaa gaaaggtatt aaggatgagt
224 1321 gttcaagatt gctggaggcc tccactatga aatcgcgtag aggctttgct attcagcgtt
225 1381 tgatgaatgc aatgcgacag gctcatgctg atggttggtt tatcgttttt gacactctca
226 1441 cgttggctga cgaccgatta gaggcgtttt atgataatcc caatgctttg cgtgactatt
227 1501 ttcgtgatat tggtcgtatg gttcttgctg ccgagggtcg caaggctaat gattcacacg
228 1561 ccgactgcta tcagtatttt tgtgtgcctg agtatggtac agctaatggc cgtcttcatt
229 1621 tccatgcggt gcactttatg cggacacttc ctacaggtag cgttgaccct aattttggtc
230 1681 gtcgggtacg caatcgccgc cagttaaata gcttgcaaaa tacgtggcct tatggttaca
231 1741 gtatgcccat cgcagttcgc tacacgcagg acgctttttc acgttctggt tggttgtggc
232 1801 ctgttgatgc taaaggtgag ccgcttaaag ctaccagtta tatggctgtt ggtttctatg
233 1861 tggctaaata cgttaacaaa aagtcagata tggaccttgc tgctaaaggt ctaggagcta
234 1921 aagaatggaa caactcacta aaaaccaagc tgtcgctact
235 //
236 LOCUS contig7 276 bp DNA linear 21-MAR-2017
237 DEFINITION Genus species strain strain.
238 ACCESSION
239 VERSION
240 KEYWORDS .
241 SOURCE Genus species
242 ORGANISM Genus species
243 Unclassified.
244 COMMENT Annotated using prokka 1.12 from
245 https://github.com/tseemann/prokka.
246 FEATURES Location/Qualifiers
247 source 1..276
248 /organism="Genus species"
249 /mol_type="genomic DNA"
250 /strain="strain"
251 ORIGIN
252 1 tcccaagaag ctgttcagaa tcagaatgag ccgcaacttc gggatgaaaa tgctcacaat
253 61 gacaaatctg tccacggagt gcttaatcca acttaccaag ctgggttacg acgcgacgcc
254 121 gttcaaccag atattgaagc agaacgcaaa aagagagatg agattgaggc tgggaaaagt
255 181 tactgtagcc gacgttttgg cggcgcaacc tgtgacgaca aatctgctca aatttatgcg
256 241 cgcttcgata aaaatgattg gcgtatccaa cctgca
257 //