Mercurial > repos > bgruening > glimmer_glimmer_to_gff
diff test-data/glimmer.gff @ 0:650106d2da39 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/glimmer commit 37388949e348d221170659bbee547bf4ac67ef1a
| author | bgruening |
|---|---|
| date | Tue, 28 Nov 2017 10:09:27 -0500 |
| parents | |
| children | 891b330ffd94 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/glimmer.gff Tue Nov 28 10:09:27 2017 -0500 @@ -0,0 +1,62 @@ +##gff-version 3 + +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 897 2918 . + . frame=+3;score=3.19 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 144 938 . - . frame=-3;score=2.86 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 7237 7368 . - . frame=-1;score=2.50 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 10347 11945 . + . frame=+3;score=2.93 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 12110 12238 . - . frame=-2;score=6.22 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 13067 15088 . - . frame=-2;score=2.95 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 15045 16529 . + . frame=+3;score=3.36 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 20276 21385 . - . frame=-2;score=2.90 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 21382 23037 . - . frame=-1;score=2.93 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 23031 24797 . + . frame=+3;score=2.92 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 27115 27291 . - . frame=-1;score=1.92 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 28556 28960 . + . frame=+2;score=2.51 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 29040 30026 . + . frame=+3;score=0.40 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 32942 33151 . - . frame=-2;score=1.06 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 34754 38242 . - . frame=-2;score=2.97 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 43100 43300 . - . frame=-2;score=6.70 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 43402 43497 . + . frame=+1;score=0.97 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 44963 45157 . - . frame=-2;score=1.68 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 46852 47430 . - . frame=-1;score=0.78 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 48354 51314 . - . frame=-3;score=2.96 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 55069 55329 . - . frame=-1;score=1.43 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 56431 59457 . - . frame=-1;score=2.96 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 59669 60169 . + . frame=+2;score=2.15 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 60516 60881 . + . frame=+3;score=0.34 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 60959 62032 . - . frame=-2;score=2.90 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 61997 62821 . + . frame=+2;score=3.73 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 62922 66395 . - . frame=-3;score=2.97 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 70996 71166 . + . frame=+1;score=0.90 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 81835 81960 . - . frame=-1;score=1.90 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 87355 89982 . + . frame=+1;score=2.96 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 90028 90390 . + . frame=+1;score=1.66 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 91917 92009 . + . frame=+3;score=0.65 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 93307 93540 . - . frame=-1;score=1.81 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 94568 96379 . - . frame=-2;score=2.94 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 96383 96523 . - . frame=-2;score=0.37 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 99628 100467 . + . frame=+1;score=3.23 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 98455 99645 . - . frame=-1;score=2.91 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 100811 102931 . + . frame=+2;score=2.95 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 103074 105521 . + . frame=+3;score=2.96 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 105847 106200 . - . frame=-1;score=0.32 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 108069 108365 . - . frame=-3;score=4.89 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 109947 110498 . - . frame=-3;score=0.90 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 110791 110907 . - . frame=-1;score=2.13 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 116538 117071 . - . frame=-3;score=0.81 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 117443 117733 . - . frame=-2;score=0.01 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 118399 118776 . - . frame=-1;score=3.59 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 119582 119740 . - . frame=-2;score=0.41 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 123152 123484 . + . frame=+2;score=2.86 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 123767 123925 . + . frame=+2;score=0.89 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 124906 126459 . - . frame=-1;score=2.93 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 126704 128992 . - . frame=-2;score=2.95 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 129011 129178 . - . frame=-2;score=1.85 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 130337 132172 . - . frame=-2;score=2.94 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 134993 136987 . + . frame=+2;score=2.94 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 137245 137523 . - . frame=-1;score=1.14 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 137825 140512 . - . frame=-2;score=2.96 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 140766 142487 . - . frame=-3;score=2.94 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 142484 143056 . - . frame=-2;score=0.89 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 143099 143578 . - . frame=-2;score=0.42 +gi|333028963|ref|NZ_CM001166.1| Streptomyces sp. Tu6071 plasmid pTu6071, whole genome shotgun sequence glimmer_prediction predicted_gene 144230 147016 . - . frame=-2;score=2.96