Mercurial > repos > bgruening > glimmer_hmm
annotate glimmerHMM/BCBio/GFF/_utils.py @ 3:5e14355f802a draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 2effed877a778e455c63a76e994a0f2bb8f4dba0
author | rmarenco |
---|---|
date | Thu, 14 Jul 2016 15:20:33 -0400 |
parents | c9699375fcf6 |
children |
rev | line source |
---|---|
0
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
1 class defaultdict(dict): |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
2 """Back compatible defaultdict: http://code.activestate.com/recipes/523034/ |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
3 """ |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
4 def __init__(self, default_factory=None, *a, **kw): |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
5 if (default_factory is not None and |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
6 not hasattr(default_factory, '__call__')): |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
7 raise TypeError('first argument must be callable') |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
8 dict.__init__(self, *a, **kw) |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
9 self.default_factory = default_factory |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
10 def __getitem__(self, key): |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
11 try: |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
12 return dict.__getitem__(self, key) |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
13 except KeyError: |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
14 return self.__missing__(key) |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
15 def __missing__(self, key): |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
16 if self.default_factory is None: |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
17 raise KeyError(key) |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
18 self[key] = value = self.default_factory() |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
19 return value |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
20 def __reduce__(self): |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
21 if self.default_factory is None: |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
22 args = tuple() |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
23 else: |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
24 args = self.default_factory, |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
25 return type(self), args, None, None, self.items() |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
26 def copy(self): |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
27 return self.__copy__() |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
28 def __copy__(self): |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
29 return type(self)(self.default_factory, self) |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
30 def __deepcopy__(self, memo): |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
31 import copy |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
32 return type(self)(self.default_factory, |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
33 copy.deepcopy(self.items())) |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
34 def __repr__(self): |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
35 return 'defaultdict(%s, %s)' % (self.default_factory, |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
36 dict.__repr__(self)) |
c9699375fcf6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
bgruening
parents:
diff
changeset
|
37 |