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view glimmerHMM/glimmerhmm_to_sequence.xml @ 1:4da91bb244dc draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 2effed877a778e455c63a76e994a0f2bb8f4dba0
author rmarenco
date Thu, 14 Jul 2016 15:11:33 -0400
parents c9699375fcf6
children
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<tool id="glimmerhmm_to_sequence" name="GlimmerHMM to Sequence" version="0.1">
    <description>converter</description>
    <command interpreter='python'>glimmerhmm_to_sequence.py 
    $glimmerhmm_input
    $genome_input
    $output
    $to_protein
    </command>
    <inputs>
        <param name="genome_input" type="data" format="fasta" label="Genome Sequence" />
        <param name="glimmerhmm_input" type="data" format="gff" label="GlimmerHmm result File" />
        <param name="to_protein" type="boolean" label="Convert to protein sequence" truevalue="True" falsevalue="False" checked="false" />
    </inputs>
    <outputs>
        <data name="output" format="fasta" />
    </outputs>
    <help>

**What it does**

It converts the GlimmerHMM GFF output to a Fasta File.

    </help>
</tool>