Mercurial > repos > bgruening > glimmer_hmm
view glimmerHMM/tool_data_table_conf.xml.sample @ 3:5e14355f802a draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 2effed877a778e455c63a76e994a0f2bb8f4dba0
author | rmarenco |
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date | Thu, 14 Jul 2016 15:20:33 -0400 |
parents | 2b0210a098ba |
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<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc--> <tables> <!-- Locations of all fasta files under genome directory --> <table name="all_fasta" comment_char="#"> <columns>value, dbkey, name, path</columns> <file path="tool-data/all_fasta.loc" /> </table> <!-- Locations of indexes in the BFAST mapper format --> <table name="bfast_indexes" comment_char="#"> <columns>value, dbkey, formats, name, path</columns> <file path="tool-data/bfast_indexes.loc" /> </table> <!-- Locations of protein (mega)blast databases --> <table name="blastdb_p" comment_char="#"> <columns>value, name, path</columns> <file path="tool-data/blastdb_p.loc" /> </table> <!-- Locations of indexes in the BWA mapper format --> <table name="bwa_indexes" comment_char="#"> <columns>value, dbkey, name, path</columns> <file path="tool-data/bwa_index.loc" /> </table> <!-- Locations of indexes in the BWA color-space mapper format --> <table name="bwa_indexes_color" comment_char="#"> <columns>value, dbkey, name, path</columns> <file path="tool-data/bwa_index_color.loc" /> </table> <!-- Locations of MAF files that have been indexed with bx-python --> <table name="indexed_maf_files"> <columns>name, value, dbkey, species</columns> <file path="tool-data/maf_index.loc" /> </table> <!-- Locations of fasta files appropriate for NGS simulation --> <table name="ngs_sim_fasta" comment_char="#"> <columns>value, dbkey, name, path</columns> <file path="tool-data/ngs_sim_fasta.loc" /> </table> <!-- Locations of PerM base index files --> <table name="perm_base_indexes" comment_char="#"> <columns>value, name, path</columns> <file path="tool-data/perm_base_index.loc" /> </table> <!-- Locations of PerM color-space index files --> <table name="perm_color_indexes" comment_char="#"> <columns>value, name, path</columns> <file path="tool-data/perm_color_index.loc" /> </table> <!-- Location of Picard dict file and other files --> <table name="picard_indexes" comment_char="#"> <columns>value, dbkey, name, path</columns> <file path="tool-data/picard_index.loc" /> </table> <!-- Location of SRMA dict file and other files --> <table name="srma_indexes" comment_char="#"> <columns>value, dbkey, name, path</columns> <file path="tool-data/picard_index.loc" /> </table> <!-- Location of Mosaik files --> <table name="mosaik_indexes" comment_char="#"> <columns>value, dbkey, name, path</columns> <file path="tool-data/mosaik_index.loc" /> </table> <!-- Locations of indexes in the 2bit format --> <table name="twobit" comment_char="#"> <columns>value, path</columns> <file path="tool-data/twobit.loc" /> </table> <!-- Available IGV builds, loaded from URL --> <table name="igv_broad_genomes" comment_char="#"> <columns>name, url, value</columns> <file url="http://igv.broadinstitute.org/genomes/genomes.txt" /> </table> <!-- Available liftOver chain file --> <table name="liftOver" comment_char="#"> <columns>dbkey, name, value</columns> <file path="tool-data/liftOver.loc" /> </table> <!-- iobio bam servers --> <table name="bam_iobio" comment_char="#"> <columns>value, name, url</columns> <file path="tool-data/bam_iobio.loc" /> </table> <!-- iobio vcf servers --> <table name="vcf_iobio" comment_char="#"> <columns>value, name, url</columns> <file path="tool-data/vcf_iobio.loc" /> </table> <!-- simple biom servers --> <table name="biom_simple_display" comment_char="#"> <columns>value, name, url</columns> <file path="tool-data/biom_simple_display.loc" /> </table> <!-- glimmer_hmm trained_dir --> <table name="glimmer_hmm_trained_dir" comment_char="#"> <columns>value, name, path</columns> <file path="tool-data/glimmer_hmm.loc" /> </table> </tables>