Mercurial > repos > bgruening > glimmer_knowledge_based
comparison test-data/test.gbk @ 0:9b2e283dc3b5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/glimmer commit 37388949e348d221170659bbee547bf4ac67ef1a
author | bgruening |
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date | Tue, 28 Nov 2017 10:10:55 -0500 |
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-1:000000000000 | 0:9b2e283dc3b5 |
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1 LOCUS contig1 350 bp DNA linear 21-MAR-2017 | |
2 DEFINITION Genus species strain strain. | |
3 ACCESSION | |
4 VERSION | |
5 KEYWORDS . | |
6 SOURCE Genus species | |
7 ORGANISM Genus species | |
8 Unclassified. | |
9 COMMENT Annotated using prokka 1.12 from | |
10 https://github.com/tseemann/prokka. | |
11 FEATURES Location/Qualifiers | |
12 source 1..350 | |
13 /organism="Genus species" | |
14 /mol_type="genomic DNA" | |
15 /strain="strain" | |
16 ORIGIN | |
17 1 gagttttatc gcttccatga cgcagaagtt aacactttcg gatatttctg atgagtcgaa | |
18 61 aaattatctt gataaagcag gaattactac tgcttgttta cgaattaaat cgaagtggac | |
19 121 tgctggcgga aaatgagaaa attcgaccta tccttgcgca gctcgagaag ctcttacttt | |
20 181 gcgacctttc gccatcaact aacgattctg tcaaaaactg acgcgttgga tgaggagaag | |
21 241 tggcttaata tgcttggcac gttcgtcaag gactggttta gatatgagtc acattttgtt | |
22 301 catggtagag attctcttgt tgacatttta aaagagcgtg gattactatc | |
23 // | |
24 LOCUS contig2 840 bp DNA linear 21-MAR-2017 | |
25 DEFINITION Genus species strain strain. | |
26 ACCESSION | |
27 VERSION | |
28 KEYWORDS . | |
29 SOURCE Genus species | |
30 ORGANISM Genus species | |
31 Unclassified. | |
32 COMMENT Annotated using prokka 1.12 from | |
33 https://github.com/tseemann/prokka. | |
34 FEATURES Location/Qualifiers | |
35 source 1..840 | |
36 /organism="Genus species" | |
37 /mol_type="genomic DNA" | |
38 /strain="strain" | |
39 CDS 40..498 | |
40 /locus_tag="PROKKA_00001" | |
41 /inference="ab initio prediction:Prodigal:2.6" | |
42 /codon_start=1 | |
43 /transl_table=11 | |
44 /product="hypothetical protein" | |
45 /translation="MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWI | |
46 ATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAE | |
47 FTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM" | |
48 CDS 498..614 | |
49 /locus_tag="PROKKA_00002" | |
50 /inference="ab initio prediction:Prodigal:2.6" | |
51 /codon_start=1 | |
52 /transl_table=11 | |
53 /product="hypothetical protein" | |
54 /translation="MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF" | |
55 ORIGIN | |
56 1 tgagtccgat gctgttcaac cactaatagg taagaaatca tgagtcaagt tactgaacaa | |
57 61 tccgtacgtt tccagaccgc tttggcctct attaagctca ttcaggcttc tgccgttttg | |
58 121 gatttaaccg aagatgattt cgattttctg acgagtaaca aagtttggat tgctactgac | |
59 181 cgctctcgtg ctcgtcgctg cgttgaggct tgcgtttatg gtacgctgga ctttgtggga | |
60 241 taccctcgct ttcctgctcc tgttgagttt attgctgccg tcattgctta ttatgttcat | |
61 301 cccgtcaaca ttcaaacggc ctgtctcatc atggaaggcg ctgaatttac ggaaaacatt | |
62 361 attaatggcg tcgagcgtcc ggttaaagcc gctgaattgt tcgcgtttac cttgcgtgta | |
63 421 cgcgcaggaa acactgacgt tcttactgac gcagaagaaa acgtgcgtca aaaattacgt | |
64 481 gcggaaggag tgatgtaatg tctaaaggta aaaaacgttc tggcgctcgc cctggtcgtc | |
65 541 cgcagccgtt gcgaggtact aaaggcaagc gtaaaggcgc tcgtctttgg tatgtaggtg | |
66 601 gtcaacaatt ttaattgcag gggcttcggc cccttacttg aggataaatt atgtctaata | |
67 661 ttcaaactgg cgccgagcgt atgccgcatg acctttccca tcttggcttc cttgctggtc | |
68 721 agattggtcg tcttattacc atttcaacta ctccggttat cgctggcgac tccttcgaga | |
69 781 tggacgccgt tggcgctctc cgtctttctc cattgcgtcg tggccttgct attgactcta | |
70 // | |
71 LOCUS contig3 210 bp DNA linear 21-MAR-2017 | |
72 DEFINITION Genus species strain strain. | |
73 ACCESSION | |
74 VERSION | |
75 KEYWORDS . | |
76 SOURCE Genus species | |
77 ORGANISM Genus species | |
78 Unclassified. | |
79 COMMENT Annotated using prokka 1.12 from | |
80 https://github.com/tseemann/prokka. | |
81 FEATURES Location/Qualifiers | |
82 source 1..210 | |
83 /organism="Genus species" | |
84 /mol_type="genomic DNA" | |
85 /strain="strain" | |
86 ORIGIN | |
87 1 ctgtagacat ttttactttt tatgtccctc atcgtcacgt ttatggtgaa cagtggatta | |
88 61 agttcatgaa ggatggtgtt aatgccactc ctctcccgac tgttaacact actggttata | |
89 121 ttgaccatgc cgcttttctt ggcacgatta accctgatac caataaaatc cctaagcatt | |
90 181 tgtttcaggg ttatttgaat atctataaca | |
91 // | |
92 LOCUS contig4 1260 bp DNA linear 21-MAR-2017 | |
93 DEFINITION Genus species strain strain. | |
94 ACCESSION | |
95 VERSION | |
96 KEYWORDS . | |
97 SOURCE Genus species | |
98 ORGANISM Genus species | |
99 Unclassified. | |
100 COMMENT Annotated using prokka 1.12 from | |
101 https://github.com/tseemann/prokka. | |
102 FEATURES Location/Qualifiers | |
103 source 1..1260 | |
104 /organism="Genus species" | |
105 /mol_type="genomic DNA" | |
106 /strain="strain" | |
107 CDS 21..884 | |
108 /locus_tag="PROKKA_00003" | |
109 /inference="ab initio prediction:Prodigal:2.6" | |
110 /codon_start=1 | |
111 /transl_table=11 | |
112 /product="hypothetical protein" | |
113 /translation="MPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQM | |
114 TTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSN | |
115 LWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI | |
116 QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSY | |
117 VSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRN | |
118 LPTTRDSIMTS" | |
119 ORIGIN | |
120 1 actattttaa agcgccgtgg atgcctgacc gtaccgaggc taaccctaat gagcttaatc | |
121 61 aagatgatgc tcgttatggt ttccgttgct gccatctcaa aaacatttgg actgctccgc | |
122 121 ttcctcctga gactgagctt tctcgccaaa tgacgacttc taccacatct attgacatta | |
123 181 tgggtctgca agctgcttat gctaatttgc atactgacca agaacgtgat tacttcatgc | |
124 241 agcgttacca tgatgttatt tcttcatttg gaggtaaaac ctcttatgac gctgacaacc | |
125 301 gtcctttact tgtcatgcgc tctaatctct gggcatctgg ctatgatgtt gatggaactg | |
126 361 accaaacgtc gttaggccag ttttctggtc gtgttcaaca gacctataaa cattctgtgc | |
127 421 cgcgtttctt tgttcctgag catggcacta tgtttactct tgcgcttgtt cgttttccgc | |
128 481 ctactgcgac taaagagatt cagtacctta acgctaaagg tgctttgact tataccgata | |
129 541 ttgctggcga ccctgttttg tatggcaact tgccgccgcg tgaaatttct atgaaggatg | |
130 601 ttttccgttc tggtgattcg tctaagaagt ttaagattgc tgagggtcag tggtatcgtt | |
131 661 atgcgccttc gtatgtttct cctgcttatc accttcttga aggcttccca ttcattcagg | |
132 721 aaccgccttc tggtgatttg caagaacgcg tacttattcg ccaccatgat tatgaccagt | |
133 781 gtttccagtc cgttcagttg ttgcagtgga atagtcaggt taaatttaat gtgaccgttt | |
134 841 atcgcaatct gccgaccact cgcgattcaa tcatgacttc gtgataaaag attgagtgtg | |
135 901 aggttataac gccgaagcgg taaaaatttt aatttttgcc gctgaggggt tgaccaagcg | |
136 961 aagcgcggta ggttttctgc ttaggagttt aatcatgttt cagactttta tttctcgcca | |
137 1021 taattcaaac tttttttctg ataagctggt tctcacttct gttactccag cttcttcggc | |
138 1081 acctgtttta cagacaccta aagctacatc gtcaacgtta tattttgata gtttgacggt | |
139 1141 taatgctggt aatggtggtt ttcttcattg cattcagatg gatacatctg tcaacgccgc | |
140 1201 taatcaggtt gtttctgttg gtgctgatat tgcttttgat gccgacccta aattttttgc | |
141 // | |
142 LOCUS contig5 490 bp DNA linear 21-MAR-2017 | |
143 DEFINITION Genus species strain strain. | |
144 ACCESSION | |
145 VERSION | |
146 KEYWORDS . | |
147 SOURCE Genus species | |
148 ORGANISM Genus species | |
149 Unclassified. | |
150 COMMENT Annotated using prokka 1.12 from | |
151 https://github.com/tseemann/prokka. | |
152 FEATURES Location/Qualifiers | |
153 source 1..490 | |
154 /organism="Genus species" | |
155 /mol_type="genomic DNA" | |
156 /strain="strain" | |
157 CDS 275..406 | |
158 /locus_tag="PROKKA_00004" | |
159 /inference="ab initio prediction:Prodigal:2.6" | |
160 /codon_start=1 | |
161 /transl_table=11 | |
162 /product="hypothetical protein" | |
163 /translation="MVLLLAVLLLLLLVAPCLNCLEAVKKPPPVAFKVMCLLPITIL" | |
164 ORIGIN | |
165 1 ctgtttggtt cgctttgagt cttcttcggt tccgactacc ctcccgactg cctatgatgt | |
166 61 ttatcctttg aatggtcgcc atgatggtgg ttattatacc gtcaaggact gtgtgactat | |
167 121 tgacgtcctt ccccgtacgc cgggcaataa cgtttatgtt ggtttcatgg tttggtctaa | |
168 181 ctttaccgct actaaatgcc gcggattggt ttcgctgaat caggttatta aagagattat | |
169 241 ttgtctccag ccacttaagt gaggtgattt atgtttggtg ctattgctgg cggtattgct | |
170 301 tctgctcttg ctggtggcgc catgtctaaa ttgtttggag gcggtcaaaa agccgcctcc | |
171 361 ggtggcattc aaggtgatgt gcttgctacc gataacaata ctgtaggcat gggtgatgct | |
172 421 ggtattaaat ctgccattca aggctctaat gttcctaacc ctgatgaggc cgcccctagt | |
173 481 tttgtttctg | |
174 // | |
175 LOCUS contig6 1960 bp DNA linear 21-MAR-2017 | |
176 DEFINITION Genus species strain strain. | |
177 ACCESSION | |
178 VERSION | |
179 KEYWORDS . | |
180 SOURCE Genus species | |
181 ORGANISM Genus species | |
182 Unclassified. | |
183 COMMENT Annotated using prokka 1.12 from | |
184 https://github.com/tseemann/prokka. | |
185 FEATURES Location/Qualifiers | |
186 source 1..1960 | |
187 /organism="Genus species" | |
188 /mol_type="genomic DNA" | |
189 /strain="strain" | |
190 CDS 6..767 | |
191 /locus_tag="PROKKA_00005" | |
192 /inference="ab initio prediction:Prodigal:2.6" | |
193 /codon_start=1 | |
194 /transl_table=11 | |
195 /product="hypothetical protein" | |
196 /translation="MAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKDTRD | |
197 YLAAAFPELNAWERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAEMQNETQKEIA | |
198 GIQSATSRQNTKDQVYAQNEMLAYQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQ | |
199 AQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASG | |
200 VVDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK" | |
201 ORIGIN | |
202 1 gtgctatggc taaagctggt aaaggacttc ttgaaggtac gttgcaggct ggcacttctg | |
203 61 ccgtttctga taagttgctt gatttggttg gacttggtgg caagtctgcc gctgataaag | |
204 121 gaaaggatac tcgtgattat cttgctgctg catttcctga gcttaatgct tgggagcgtg | |
205 181 ctggtgctga tgcttcctct gctggtatgg ttgacgccgg atttgagaat caaaaagagc | |
206 241 ttactaaaat gcaactggac aatcagaaag agattgccga gatgcaaaat gagactcaaa | |
207 301 aagagattgc tggcattcag tcggcgactt cacgccagaa tacgaaagac caggtatatg | |
208 361 cacaaaatga gatgcttgct tatcaacaga aggagtctac tgctcgcgtt gcgtctatta | |
209 421 tggaaaacac caatctttcc aagcaacagc aggtttccga gattatgcgc caaatgctta | |
210 481 ctcaagctca aacggctggt cagtatttta ccaatgacca aatcaaagaa atgactcgca | |
211 541 aggttagtgc tgaggttgac ttagttcatc agcaaacgca gaatcagcgg tatggctctt | |
212 601 ctcatattgg cgctactgca aaggatattt ctaatgtcgt cactgatgct gcttctggtg | |
213 661 tggttgatat ttttcatggt attgataaag ctgttgccga tacttggaac aatttctgga | |
214 721 aagacggtaa agctgatggt attggctcta atttgtctag gaaataaccg tcaggattga | |
215 781 caccctccca attgtatgtt ttcatgcctc caaatcttgg aggctttttt atggttcgtt | |
216 841 cttattaccc ttctgaatgt cacgctgatt attttgactt tgagcgtatc gaggctctta | |
217 901 aacctgctat tgaggcttgt ggcatttcta ctctttctca atccccaatg cttggcttcc | |
218 961 ataagcagat ggataaccgc atcaagctct tggaagagat tctgtctttt cgtatgcagg | |
219 1021 gcgttgagtt cgataatggt gatatgtatg ttgacggcca taaggctgct tctgacgttc | |
220 1081 gtgatgagtt tgtatctgtt actgagaagt taatggatga attggcacaa tgctacaatg | |
221 1141 tgctccccca acttgatatt aataacacta tagaccaccg ccccgaaggg gacgaaaaat | |
222 1201 ggtttttaga gaacgagaag acggttacgc agttttgccg caagctggct gctgaacgcc | |
223 1261 ctcttaagga tattcgcgat gagtataatt accccaaaaa gaaaggtatt aaggatgagt | |
224 1321 gttcaagatt gctggaggcc tccactatga aatcgcgtag aggctttgct attcagcgtt | |
225 1381 tgatgaatgc aatgcgacag gctcatgctg atggttggtt tatcgttttt gacactctca | |
226 1441 cgttggctga cgaccgatta gaggcgtttt atgataatcc caatgctttg cgtgactatt | |
227 1501 ttcgtgatat tggtcgtatg gttcttgctg ccgagggtcg caaggctaat gattcacacg | |
228 1561 ccgactgcta tcagtatttt tgtgtgcctg agtatggtac agctaatggc cgtcttcatt | |
229 1621 tccatgcggt gcactttatg cggacacttc ctacaggtag cgttgaccct aattttggtc | |
230 1681 gtcgggtacg caatcgccgc cagttaaata gcttgcaaaa tacgtggcct tatggttaca | |
231 1741 gtatgcccat cgcagttcgc tacacgcagg acgctttttc acgttctggt tggttgtggc | |
232 1801 ctgttgatgc taaaggtgag ccgcttaaag ctaccagtta tatggctgtt ggtttctatg | |
233 1861 tggctaaata cgttaacaaa aagtcagata tggaccttgc tgctaaaggt ctaggagcta | |
234 1921 aagaatggaa caactcacta aaaaccaagc tgtcgctact | |
235 // | |
236 LOCUS contig7 276 bp DNA linear 21-MAR-2017 | |
237 DEFINITION Genus species strain strain. | |
238 ACCESSION | |
239 VERSION | |
240 KEYWORDS . | |
241 SOURCE Genus species | |
242 ORGANISM Genus species | |
243 Unclassified. | |
244 COMMENT Annotated using prokka 1.12 from | |
245 https://github.com/tseemann/prokka. | |
246 FEATURES Location/Qualifiers | |
247 source 1..276 | |
248 /organism="Genus species" | |
249 /mol_type="genomic DNA" | |
250 /strain="strain" | |
251 ORIGIN | |
252 1 tcccaagaag ctgttcagaa tcagaatgag ccgcaacttc gggatgaaaa tgctcacaat | |
253 61 gacaaatctg tccacggagt gcttaatcca acttaccaag ctgggttacg acgcgacgcc | |
254 121 gttcaaccag atattgaagc agaacgcaaa aagagagatg agattgaggc tgggaaaagt | |
255 181 tactgtagcc gacgttttgg cggcgcaacc tgtgacgaca aatctgctca aatttatgcg | |
256 241 cgcttcgata aaaatgattg gcgtatccaa cctgca | |
257 // |