diff test-data/test.gbk @ 0:a4136c1534be draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/glimmer commit 37388949e348d221170659bbee547bf4ac67ef1a

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test.gbk	Tue Nov 28 10:11:42 2017 -0500
@@ -0,0 +1,257 @@
+LOCUS       contig1                  350 bp    DNA     linear       21-MAR-2017
+DEFINITION  Genus species strain strain.
+ACCESSION   
+VERSION
+KEYWORDS    .
+SOURCE      Genus species
+  ORGANISM  Genus species
+            Unclassified.
+COMMENT     Annotated using prokka 1.12 from
+            https://github.com/tseemann/prokka.
+FEATURES             Location/Qualifiers
+     source          1..350
+                     /organism="Genus species"
+                     /mol_type="genomic DNA"
+                     /strain="strain"
+ORIGIN      
+        1 gagttttatc gcttccatga cgcagaagtt aacactttcg gatatttctg atgagtcgaa
+       61 aaattatctt gataaagcag gaattactac tgcttgttta cgaattaaat cgaagtggac
+      121 tgctggcgga aaatgagaaa attcgaccta tccttgcgca gctcgagaag ctcttacttt
+      181 gcgacctttc gccatcaact aacgattctg tcaaaaactg acgcgttgga tgaggagaag
+      241 tggcttaata tgcttggcac gttcgtcaag gactggttta gatatgagtc acattttgtt
+      301 catggtagag attctcttgt tgacatttta aaagagcgtg gattactatc
+//
+LOCUS       contig2                  840 bp    DNA     linear       21-MAR-2017
+DEFINITION  Genus species strain strain.
+ACCESSION   
+VERSION
+KEYWORDS    .
+SOURCE      Genus species
+  ORGANISM  Genus species
+            Unclassified.
+COMMENT     Annotated using prokka 1.12 from
+            https://github.com/tseemann/prokka.
+FEATURES             Location/Qualifiers
+     source          1..840
+                     /organism="Genus species"
+                     /mol_type="genomic DNA"
+                     /strain="strain"
+     CDS             40..498
+                     /locus_tag="PROKKA_00001"
+                     /inference="ab initio prediction:Prodigal:2.6"
+                     /codon_start=1
+                     /transl_table=11
+                     /product="hypothetical protein"
+                     /translation="MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWI
+                     ATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAE
+                     FTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM"
+     CDS             498..614
+                     /locus_tag="PROKKA_00002"
+                     /inference="ab initio prediction:Prodigal:2.6"
+                     /codon_start=1
+                     /transl_table=11
+                     /product="hypothetical protein"
+                     /translation="MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF"
+ORIGIN      
+        1 tgagtccgat gctgttcaac cactaatagg taagaaatca tgagtcaagt tactgaacaa
+       61 tccgtacgtt tccagaccgc tttggcctct attaagctca ttcaggcttc tgccgttttg
+      121 gatttaaccg aagatgattt cgattttctg acgagtaaca aagtttggat tgctactgac
+      181 cgctctcgtg ctcgtcgctg cgttgaggct tgcgtttatg gtacgctgga ctttgtggga
+      241 taccctcgct ttcctgctcc tgttgagttt attgctgccg tcattgctta ttatgttcat
+      301 cccgtcaaca ttcaaacggc ctgtctcatc atggaaggcg ctgaatttac ggaaaacatt
+      361 attaatggcg tcgagcgtcc ggttaaagcc gctgaattgt tcgcgtttac cttgcgtgta
+      421 cgcgcaggaa acactgacgt tcttactgac gcagaagaaa acgtgcgtca aaaattacgt
+      481 gcggaaggag tgatgtaatg tctaaaggta aaaaacgttc tggcgctcgc cctggtcgtc
+      541 cgcagccgtt gcgaggtact aaaggcaagc gtaaaggcgc tcgtctttgg tatgtaggtg
+      601 gtcaacaatt ttaattgcag gggcttcggc cccttacttg aggataaatt atgtctaata
+      661 ttcaaactgg cgccgagcgt atgccgcatg acctttccca tcttggcttc cttgctggtc
+      721 agattggtcg tcttattacc atttcaacta ctccggttat cgctggcgac tccttcgaga
+      781 tggacgccgt tggcgctctc cgtctttctc cattgcgtcg tggccttgct attgactcta
+//
+LOCUS       contig3                  210 bp    DNA     linear       21-MAR-2017
+DEFINITION  Genus species strain strain.
+ACCESSION   
+VERSION
+KEYWORDS    .
+SOURCE      Genus species
+  ORGANISM  Genus species
+            Unclassified.
+COMMENT     Annotated using prokka 1.12 from
+            https://github.com/tseemann/prokka.
+FEATURES             Location/Qualifiers
+     source          1..210
+                     /organism="Genus species"
+                     /mol_type="genomic DNA"
+                     /strain="strain"
+ORIGIN      
+        1 ctgtagacat ttttactttt tatgtccctc atcgtcacgt ttatggtgaa cagtggatta
+       61 agttcatgaa ggatggtgtt aatgccactc ctctcccgac tgttaacact actggttata
+      121 ttgaccatgc cgcttttctt ggcacgatta accctgatac caataaaatc cctaagcatt
+      181 tgtttcaggg ttatttgaat atctataaca
+//
+LOCUS       contig4                 1260 bp    DNA     linear       21-MAR-2017
+DEFINITION  Genus species strain strain.
+ACCESSION   
+VERSION
+KEYWORDS    .
+SOURCE      Genus species
+  ORGANISM  Genus species
+            Unclassified.
+COMMENT     Annotated using prokka 1.12 from
+            https://github.com/tseemann/prokka.
+FEATURES             Location/Qualifiers
+     source          1..1260
+                     /organism="Genus species"
+                     /mol_type="genomic DNA"
+                     /strain="strain"
+     CDS             21..884
+                     /locus_tag="PROKKA_00003"
+                     /inference="ab initio prediction:Prodigal:2.6"
+                     /codon_start=1
+                     /transl_table=11
+                     /product="hypothetical protein"
+                     /translation="MPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQM
+                     TTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSN
+                     LWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI
+                     QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSY
+                     VSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRN
+                     LPTTRDSIMTS"
+ORIGIN      
+        1 actattttaa agcgccgtgg atgcctgacc gtaccgaggc taaccctaat gagcttaatc
+       61 aagatgatgc tcgttatggt ttccgttgct gccatctcaa aaacatttgg actgctccgc
+      121 ttcctcctga gactgagctt tctcgccaaa tgacgacttc taccacatct attgacatta
+      181 tgggtctgca agctgcttat gctaatttgc atactgacca agaacgtgat tacttcatgc
+      241 agcgttacca tgatgttatt tcttcatttg gaggtaaaac ctcttatgac gctgacaacc
+      301 gtcctttact tgtcatgcgc tctaatctct gggcatctgg ctatgatgtt gatggaactg
+      361 accaaacgtc gttaggccag ttttctggtc gtgttcaaca gacctataaa cattctgtgc
+      421 cgcgtttctt tgttcctgag catggcacta tgtttactct tgcgcttgtt cgttttccgc
+      481 ctactgcgac taaagagatt cagtacctta acgctaaagg tgctttgact tataccgata
+      541 ttgctggcga ccctgttttg tatggcaact tgccgccgcg tgaaatttct atgaaggatg
+      601 ttttccgttc tggtgattcg tctaagaagt ttaagattgc tgagggtcag tggtatcgtt
+      661 atgcgccttc gtatgtttct cctgcttatc accttcttga aggcttccca ttcattcagg
+      721 aaccgccttc tggtgatttg caagaacgcg tacttattcg ccaccatgat tatgaccagt
+      781 gtttccagtc cgttcagttg ttgcagtgga atagtcaggt taaatttaat gtgaccgttt
+      841 atcgcaatct gccgaccact cgcgattcaa tcatgacttc gtgataaaag attgagtgtg
+      901 aggttataac gccgaagcgg taaaaatttt aatttttgcc gctgaggggt tgaccaagcg
+      961 aagcgcggta ggttttctgc ttaggagttt aatcatgttt cagactttta tttctcgcca
+     1021 taattcaaac tttttttctg ataagctggt tctcacttct gttactccag cttcttcggc
+     1081 acctgtttta cagacaccta aagctacatc gtcaacgtta tattttgata gtttgacggt
+     1141 taatgctggt aatggtggtt ttcttcattg cattcagatg gatacatctg tcaacgccgc
+     1201 taatcaggtt gtttctgttg gtgctgatat tgcttttgat gccgacccta aattttttgc
+//
+LOCUS       contig5                  490 bp    DNA     linear       21-MAR-2017
+DEFINITION  Genus species strain strain.
+ACCESSION   
+VERSION
+KEYWORDS    .
+SOURCE      Genus species
+  ORGANISM  Genus species
+            Unclassified.
+COMMENT     Annotated using prokka 1.12 from
+            https://github.com/tseemann/prokka.
+FEATURES             Location/Qualifiers
+     source          1..490
+                     /organism="Genus species"
+                     /mol_type="genomic DNA"
+                     /strain="strain"
+     CDS             275..406
+                     /locus_tag="PROKKA_00004"
+                     /inference="ab initio prediction:Prodigal:2.6"
+                     /codon_start=1
+                     /transl_table=11
+                     /product="hypothetical protein"
+                     /translation="MVLLLAVLLLLLLVAPCLNCLEAVKKPPPVAFKVMCLLPITIL"
+ORIGIN      
+        1 ctgtttggtt cgctttgagt cttcttcggt tccgactacc ctcccgactg cctatgatgt
+       61 ttatcctttg aatggtcgcc atgatggtgg ttattatacc gtcaaggact gtgtgactat
+      121 tgacgtcctt ccccgtacgc cgggcaataa cgtttatgtt ggtttcatgg tttggtctaa
+      181 ctttaccgct actaaatgcc gcggattggt ttcgctgaat caggttatta aagagattat
+      241 ttgtctccag ccacttaagt gaggtgattt atgtttggtg ctattgctgg cggtattgct
+      301 tctgctcttg ctggtggcgc catgtctaaa ttgtttggag gcggtcaaaa agccgcctcc
+      361 ggtggcattc aaggtgatgt gcttgctacc gataacaata ctgtaggcat gggtgatgct
+      421 ggtattaaat ctgccattca aggctctaat gttcctaacc ctgatgaggc cgcccctagt
+      481 tttgtttctg
+//
+LOCUS       contig6                 1960 bp    DNA     linear       21-MAR-2017
+DEFINITION  Genus species strain strain.
+ACCESSION   
+VERSION
+KEYWORDS    .
+SOURCE      Genus species
+  ORGANISM  Genus species
+            Unclassified.
+COMMENT     Annotated using prokka 1.12 from
+            https://github.com/tseemann/prokka.
+FEATURES             Location/Qualifiers
+     source          1..1960
+                     /organism="Genus species"
+                     /mol_type="genomic DNA"
+                     /strain="strain"
+     CDS             6..767
+                     /locus_tag="PROKKA_00005"
+                     /inference="ab initio prediction:Prodigal:2.6"
+                     /codon_start=1
+                     /transl_table=11
+                     /product="hypothetical protein"
+                     /translation="MAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKDTRD
+                     YLAAAFPELNAWERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAEMQNETQKEIA
+                     GIQSATSRQNTKDQVYAQNEMLAYQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQ
+                     AQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASG
+                     VVDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK"
+ORIGIN      
+        1 gtgctatggc taaagctggt aaaggacttc ttgaaggtac gttgcaggct ggcacttctg
+       61 ccgtttctga taagttgctt gatttggttg gacttggtgg caagtctgcc gctgataaag
+      121 gaaaggatac tcgtgattat cttgctgctg catttcctga gcttaatgct tgggagcgtg
+      181 ctggtgctga tgcttcctct gctggtatgg ttgacgccgg atttgagaat caaaaagagc
+      241 ttactaaaat gcaactggac aatcagaaag agattgccga gatgcaaaat gagactcaaa
+      301 aagagattgc tggcattcag tcggcgactt cacgccagaa tacgaaagac caggtatatg
+      361 cacaaaatga gatgcttgct tatcaacaga aggagtctac tgctcgcgtt gcgtctatta
+      421 tggaaaacac caatctttcc aagcaacagc aggtttccga gattatgcgc caaatgctta
+      481 ctcaagctca aacggctggt cagtatttta ccaatgacca aatcaaagaa atgactcgca
+      541 aggttagtgc tgaggttgac ttagttcatc agcaaacgca gaatcagcgg tatggctctt
+      601 ctcatattgg cgctactgca aaggatattt ctaatgtcgt cactgatgct gcttctggtg
+      661 tggttgatat ttttcatggt attgataaag ctgttgccga tacttggaac aatttctgga
+      721 aagacggtaa agctgatggt attggctcta atttgtctag gaaataaccg tcaggattga
+      781 caccctccca attgtatgtt ttcatgcctc caaatcttgg aggctttttt atggttcgtt
+      841 cttattaccc ttctgaatgt cacgctgatt attttgactt tgagcgtatc gaggctctta
+      901 aacctgctat tgaggcttgt ggcatttcta ctctttctca atccccaatg cttggcttcc
+      961 ataagcagat ggataaccgc atcaagctct tggaagagat tctgtctttt cgtatgcagg
+     1021 gcgttgagtt cgataatggt gatatgtatg ttgacggcca taaggctgct tctgacgttc
+     1081 gtgatgagtt tgtatctgtt actgagaagt taatggatga attggcacaa tgctacaatg
+     1141 tgctccccca acttgatatt aataacacta tagaccaccg ccccgaaggg gacgaaaaat
+     1201 ggtttttaga gaacgagaag acggttacgc agttttgccg caagctggct gctgaacgcc
+     1261 ctcttaagga tattcgcgat gagtataatt accccaaaaa gaaaggtatt aaggatgagt
+     1321 gttcaagatt gctggaggcc tccactatga aatcgcgtag aggctttgct attcagcgtt
+     1381 tgatgaatgc aatgcgacag gctcatgctg atggttggtt tatcgttttt gacactctca
+     1441 cgttggctga cgaccgatta gaggcgtttt atgataatcc caatgctttg cgtgactatt
+     1501 ttcgtgatat tggtcgtatg gttcttgctg ccgagggtcg caaggctaat gattcacacg
+     1561 ccgactgcta tcagtatttt tgtgtgcctg agtatggtac agctaatggc cgtcttcatt
+     1621 tccatgcggt gcactttatg cggacacttc ctacaggtag cgttgaccct aattttggtc
+     1681 gtcgggtacg caatcgccgc cagttaaata gcttgcaaaa tacgtggcct tatggttaca
+     1741 gtatgcccat cgcagttcgc tacacgcagg acgctttttc acgttctggt tggttgtggc
+     1801 ctgttgatgc taaaggtgag ccgcttaaag ctaccagtta tatggctgtt ggtttctatg
+     1861 tggctaaata cgttaacaaa aagtcagata tggaccttgc tgctaaaggt ctaggagcta
+     1921 aagaatggaa caactcacta aaaaccaagc tgtcgctact
+//
+LOCUS       contig7                  276 bp    DNA     linear       21-MAR-2017
+DEFINITION  Genus species strain strain.
+ACCESSION   
+VERSION
+KEYWORDS    .
+SOURCE      Genus species
+  ORGANISM  Genus species
+            Unclassified.
+COMMENT     Annotated using prokka 1.12 from
+            https://github.com/tseemann/prokka.
+FEATURES             Location/Qualifiers
+     source          1..276
+                     /organism="Genus species"
+                     /mol_type="genomic DNA"
+                     /strain="strain"
+ORIGIN      
+        1 tcccaagaag ctgttcagaa tcagaatgag ccgcaacttc gggatgaaaa tgctcacaat
+       61 gacaaatctg tccacggagt gcttaatcca acttaccaag ctgggttacg acgcgacgcc
+      121 gttcaaccag atattgaagc agaacgcaaa aagagagatg agattgaggc tgggaaaagt
+      181 tactgtagcc gacgttttgg cggcgcaacc tgtgacgaca aatctgctca aatttatgcg
+      241 cgcttcgata aaaatgattg gcgtatccaa cctgca
+//