Mercurial > repos > bgruening > hicexplorer_chicexportdata
annotate chicExportData.xml @ 2:cab616fe7e64 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 79133bc3739fbcc6c2055d589679aae312161d03
author | iuc |
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date | Mon, 04 Nov 2024 23:50:05 +0000 |
parents | 163fd744e235 |
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163fd744e235
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
iuc
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1 <tool id="hicexplorer_chicexportdata" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
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23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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2 <description>exports data of hdf to txt based files</description> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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3 <macros> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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4 <token name="@BINARY@">chicExportData</token> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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5 <import>macros.xml</import> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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6 </macros> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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7 <expand macro="requirements" /> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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8 <command detect_errors="exit_code"><![CDATA[ |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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9 #import re |
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163fd744e235
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
iuc
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10 mkdir exportFolder && |
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23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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11 @BINARY@ |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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12 --file '$file' |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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13 |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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14 #if $fileType_conditional.fileType_selector == 'interaction': |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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15 #if $fileType_conditional.txtBigwig_conditional.txtBigwig_selector == 'txt': |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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16 --outputFileType txt |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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17 #else: |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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18 --outputFileType bigwig |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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19 --outputValueBigwig $fileType_conditional.txtBigwig_conditional.column_selector |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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20 --chromosomeSizes '$fileType_conditional.txtBigwig_conditional.chromosomeSize' |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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21 --range $fileType_conditional.txtBigwig_conditional.rangeUpstream $fileType_conditional.txtBigwig_conditional.rangeDownstream |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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22 --backgroundModelFile '$fileType_conditional.txtBigwig_conditional.backgroundModelFile' |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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23 #end if |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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24 #else if $fileType_conditional.fileType_selector == 'target': |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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25 $fileType_conditional.oneTargetFile |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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26 #end if |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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27 #if $fileType_conditional.fileType_selector != 'interaction': |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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28 --outputFileType txt |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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29 #end if |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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30 |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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31 --outputMode $outputMode_conditional.outputMode_selector |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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32 #if $outputMode_conditional.outputMode_selector == 'geneName': |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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33 --outputModeName $outputMode_conditional.outputModeName |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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34 #end if |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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35 --decimalPlaces $decimalPlaces |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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36 --outFileName exportFolder/export.tar.gz |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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37 --threads @THREADS@ |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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38 |
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163fd744e235
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
iuc
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39 ]]></command> |
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23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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40 <inputs> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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41 <param name="file" type="data" format="h5" label="" /> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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42 <conditional name="fileType_conditional"> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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43 |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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44 <param name="fileType_selector" type="select" label="Combination mode for the plots"> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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45 <option value="interaction" selected="True">Interaction file (from chicViewpoint)</option> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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46 <option value="aggregate">Aggregated file (from chicAggregateStatistic)</option> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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47 <option value="significant" >Significant file (from chicSignificantInteractions)</option> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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48 <option value="target" >Target file (from chicSignificantInteractions)</option> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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49 <option value="differential" >Differential file (from chicDifferentialTest)</option> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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50 </param> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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51 <when value="interaction" > |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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52 <conditional name="txtBigwig_conditional"> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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53 <param name="txtBigwig_selector" type="select" label="Output format"> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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54 <option value="txt" selected="True">Text</option> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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55 <option value="bigwig">BigWig</option> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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56 </param> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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57 <when value="txt" > |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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58 </when> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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59 <when value="bigwig" > |
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163fd744e235
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
iuc
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60 <param name="rangeUpstream" type="integer" value="500000" label="Upstream range" |
163fd744e235
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
iuc
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61 help="Defines the region upstream of a reference point which should be considered in the analysis." /> |
163fd744e235
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
iuc
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62 <param name="rangeDownstream" type="integer" value="500000" label="Downstream range" |
163fd744e235
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
iuc
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63 help="Defines the region upstream of a reference point which should be considered in the analysis." /> |
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23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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64 <param name="column_selector" type="select" label="Datatrack output type"> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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65 <option value="relative-interactions" selected="True">relative interactions</option> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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66 <option value="p-value">p-value</option> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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67 <option value="x-fold" >x-fold</option> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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68 <option value="raw" >raw</option> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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69 </param> |
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163fd744e235
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
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70 <param name="backgroundModelFile" type="data" format="tabular" label="Background model" |
163fd744e235
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
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71 help="The background file computed by chicViewpointBackgroundModel" /> |
163fd744e235
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
iuc
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72 <param name="chromosomeSize" type="data" format="tabular" label="Chromosome size" |
163fd744e235
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
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73 help="Chromosome size as tabular file. One chromosome per line" /> |
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23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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74 </when> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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75 </conditional> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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76 </when> |
23b8d6b8960c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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77 <when value="aggregate" > |
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78 </when> |
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79 <when value="significant" > |
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80 </when> |
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81 <when value="target" > |
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82 <param name="oneTargetFile" type="boolean" truevalue="--oneTargetFile" falsevalue="" checked="false" label="Create only one target file" /> |
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83 </when> |
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84 <when value="differential" > |
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85 </when> |
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86 </conditional> |
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87 |
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88 <conditional name="outputMode_conditional"> |
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89 <param name="outputMode_selector" type="select" label="Output mode"> |
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90 <option value="all" selected="True">all</option> |
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91 <option value="geneName" >gene name</option> |
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92 </param> |
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93 <when value="all" > |
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94 </when> |
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95 <when value="geneName" > |
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96 <param name="outputModeName" type="text" value="" label="Gene name" help="Based on this gene name the output is extracted." /> |
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97 </when> |
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98 </conditional> |
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99 <param name="decimalPlaces" type="integer" value="12" label="Decimal places" help="Number of decimal places for float values." /> |
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100 |
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101 </inputs> |
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102 <outputs> |
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103 <collection name="oneGeneCollectionBigwig" type="list" label="The exported bigwig files"> |
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104 <discover_datasets pattern="__name__" format="bigwig" directory="exportFolder" /> |
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105 </collection> |
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106 <collection name="oneGeneCollectionText" type="list" label="The exported text files"> |
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107 <discover_datasets pattern="__name__" format="txt" directory="exportFolder" /> |
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108 </collection> |
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109 <data name="allTar" from_work_dir="exportFolder/export.tar.gz" format="tar.gz" label="The exported data as tar.gz"> |
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110 <filter>outputMode_conditional['outputMode_selector'] == 'all'</filter> |
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111 </data> |
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112 </outputs> |
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113 <tests> |
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114 <test expect_num_outputs="3"> |
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115 <param name="file" value="cHi-C/chicAggregateStatistic/aggregate.hdf5" /> |
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116 <conditional name="fileType_conditional"> |
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117 <param name="fileType_selector" value="aggregate" /> |
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118 </conditional> |
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119 <conditional name="outputMode_conditional"> |
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120 <param name="outputMode_selector" value="all" /> |
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121 </conditional> |
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122 <output name="allTar" file="cHi-C/chicExportData/aggregate.tar.gz" ftype="tar.gz" compare="sim_size" /> |
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123 </test> |
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124 |
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125 <test expect_num_outputs="2"> |
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126 <param name="file" value="cHi-C/chicViewpoint/two_matrices.hdf5" /> |
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127 <conditional name="fileType_conditional"> |
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128 <param name="fileType_selector" value="interaction" /> |
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129 |
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130 <conditional name="txtBigwig_conditional"> |
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131 <param name="txtBigwig_selector" value="bigwig" /> |
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132 <param name="backgroundModelFile" value="cHi-C/background.txt" /> |
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133 <param name="chromosomeSize" value="cHi-C/hg19.chrom.sizes" /> |
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134 </conditional> |
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135 </conditional> |
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136 <conditional name="outputMode_conditional"> |
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137 <param name="outputMode_selector" value="geneName" /> |
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138 <param name="outputModeName" value="Eya1" /> |
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139 </conditional> |
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140 <output_collection name="oneGeneCollectionBigwig" type="list" count="4"> |
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141 <element name="FL-E13-5_chr1_genes_Eya1.bigwig" file="cHi-C/chicExportData/oneGene/FL-E13-5_chr1_genes_Eya1.bigwig" ftype="bigwig" compare="sim_size" /> |
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142 <element name="MB-E10-5_chr1_genes_Eya1.bigwig" file="cHi-C/chicExportData/oneGene/MB-E10-5_chr1_genes_Eya1.bigwig" ftype="bigwig" compare="sim_size" /> |
0
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143 <element name="background_FL-E13-5_chr1_genes_Eya1_interactions.bigwig" file="cHi-C/chicExportData/oneGene/background_FL-E13-5_chr1_genes_Eya1_interactions.bigwig" ftype="bigwig" compare="sim_size" /> |
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144 <element name="background_MB-E10-5_chr1_genes_Eya1_interactions.bigwig" file="cHi-C/chicExportData/oneGene/background_MB-E10-5_chr1_genes_Eya1_interactions.bigwig" ftype="bigwig" compare="sim_size" /> |
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145 </output_collection> |
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146 </test> |
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147 <test expect_num_outputs="2"> |
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148 <param name="file" value="cHi-C/chicViewpoint/two_matrices.hdf5" /> |
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149 <conditional name="fileType_conditional"> |
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150 <param name="fileType_selector" value="interaction" /> |
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151 <conditional name="txtBigwig_conditional"> |
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152 <param name="txtBigwig_selector" value="txt" /> |
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153 </conditional> |
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154 </conditional> |
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155 <conditional name="outputMode_conditional"> |
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156 <param name="outputMode_selector" value="geneName" /> |
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157 <param name="outputModeName" value="Eya1" /> |
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158 </conditional> |
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159 <output_collection name="oneGeneCollectionText" type="list" count="2"> |
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160 <element name="FL-E13-5_chr1_genes_Eya1_interactions.txt" file="cHi-C/chicExportData/oneGene/FL-E13-5_chr1_genes_Eya1_interactions.txt" ftype="txt" compare="sim_size" /> |
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161 <element name="MB-E10-5_chr1_genes_Eya1_interactions.txt" file="cHi-C/chicExportData/oneGene/MB-E10-5_chr1_genes_Eya1_interactions.txt" ftype="txt" compare="sim_size" /> |
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162 </output_collection> |
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163 </test> |
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164 </tests> |
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165 <help><![CDATA[ |
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166 |
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167 Exporting the binary data to text files |
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168 ======================================= |
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169 |
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170 chicExportData extracts the data stored in hdf5 files of the capture Hi-C modules to text files. |
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171 |
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172 For more information about HiCExplorer please consider our documentation on readthedocs.io_ |
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173 |
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174 .. _readthedocs.io: http://hicexplorer.readthedocs.io/en/latest/index.html |
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175 ]]> </help> |
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176 <expand macro="citations" /> |
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177 </tool> |