Mercurial > repos > bgruening > hicexplorer_chicqualitycontrol
comparison test-data/raw_qc_report @ 8:b892fa1fcaec draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
| author | iuc |
|---|---|
| date | Wed, 18 Oct 2023 10:54:38 +0000 |
| parents | db4a82804126 |
| children |
comparison
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| 7:fadd03fbc4f5 | 8:b892fa1fcaec |
|---|---|
| 1 | 1 |
| 2 File matrix.h5 | 2 File matrix.cool |
| 3 Sequenced reads 983 | 3 Sequenced reads 983 |
| 4 Min rest. site distance 300 | 4 Min rest. site distance 300 |
| 5 Max library insert size 1000 | 5 Max library insert size 1000 |
| 6 | 6 |
| 7 # count (percentage w.r.t. total sequenced reads) | 7 # count (percentage w.r.t. total sequenced reads) |
| 10 One mate unmapped 506 (51.48) | 10 One mate unmapped 506 (51.48) |
| 11 One mate not unique 13 (1.32) | 11 One mate not unique 13 (1.32) |
| 12 Low mapping quality 164 (16.68) | 12 Low mapping quality 164 (16.68) |
| 13 | 13 |
| 14 # count (percentage w.r.t. mappable, unique and high quality pairs) | 14 # count (percentage w.r.t. mappable, unique and high quality pairs) |
| 15 dangling end GATC 1 (0.33) | 15 dangling end GATC (restriction sequence GATC) 1 (0.33) |
| 16 self ligation (removed) 0 (0.00) | 16 self ligation (removed) 0 (0.00) |
| 17 One mate not close to rest site 0 (0.00) | 17 One mate not close to rest site 0 (0.00) |
| 18 same fragment 84 (28.00) | 18 same fragment 84 (28.00) |
| 19 self circle 33 (11.00) | 19 self circle 33 (11.00) |
| 20 duplicated pairs 0 (0.00) | 20 duplicated pairs 0 (0.00) |