Mercurial > repos > bgruening > hicexplorer_chicqualitycontrol

diff chicQualityControl.xml @ 3:0e149d0c112c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
author iuc
date Tue, 24 Mar 2020 13:40:37 -0400
parents 7095bb186016
children db4a82804126
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line diff
--- a/chicQualityControl.xml	Wed Mar 11 16:52:37 2020 -0400
+++ b/chicQualityControl.xml	Tue Mar 24 13:40:37 2020 -0400
@@ -49,6 +49,10 @@
         <data name="raw_reference_points" from_work_dir="reference_points_raw_filter" format="interval" label="${tool.name} on [${on_string}]: Reference points raw"/>
         <data name="rejected_reference_points" from_work_dir="reference_points_rejected_filter" format="interval" label="${tool.name} on [${on_string}]: Reference points rejected"/>
         <data name="accepted_reference_points" from_work_dir="reference_points" format="interval" label="${tool.name} on [${on_string}]: Reference points accepted"/>
+        <data name="failed_reference_points" from_work_dir="reference_points_failed_reference_points" format="interval" label="${tool.name} on [${on_string}]: Reference points failed"/>
+        
+        <data name="report" from_work_dir="reference_points_report" format="txt" label="${tool.name} on [${on_string}]: Report"/>
+        
         <data name="plot_histrogram" from_work_dir="histogram" format="png" label="${tool.name} on [${on_string}]: Histrogram plot">
             <change_format>
                 <when input="image_file_format" value="svg" format="svg" />
@@ -71,6 +75,9 @@
             <output name="accepted_reference_points" file="cHi-C/chicQualityControl/new_referencepoints.bed" ftype="interval" compare="sim_size" delta='40000'/>
             <output name="raw_reference_points" file="cHi-C/chicQualityControl/new_referencepoints.bed_raw_filter" ftype="interval" compare="sim_size" delta='40000'/>
             <output name="rejected_reference_points" file="cHi-C/chicQualityControl/new_referencepoints.bed_rejected_filter" ftype="interval" compare="sim_size" delta='40000'/>
+            <output name="failed_reference_points" file="cHi-C/chicQualityControl/new_referencepoints.bed_failed_reference_points" ftype="interval" compare="sim_size" delta='40000'/>
+            <output name="report" file="cHi-C/chicQualityControl/new_referencepoints.bed_report" ftype="txt" compare="sim_size" delta='40000'/>
+            
             <output name="plot_histrogram" file="cHi-C/chicQualityControl/histogram.png" ftype="png" compare='sim_size' delta='40000'/>
             <output name="plot_sparsity" file="cHi-C/chicQualityControl/sparsity.png" ftype="png" compare="sim_size" delta='40000'/>