Mercurial > repos > bgruening > hicexplorer_chicsignificantinteractions
comparison test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 3:7668fac6cc3a draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
| author | iuc |
|---|---|
| date | Tue, 24 Mar 2020 13:42:40 -0400 |
| parents | |
| children | 6001400eed99 |
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| 2:3df84bb4486c | 3:7668fac6cc3a |
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| 1 # Created with chicQualityControl version 3.4.3 | |
| 2 # QC report for matrices: 0_matrix.cool 1_matrix.cool | |
| 3 #Sparsity threshold for rejection: sparsity <= 0.05 are rejected. | |
| 4 | |
| 5 Number of reference points: 43 | |
| 6 Number of accepted reference points: 35 | |
| 7 Number of rejected reference points: 8 | |
| 8 Number of faulty reference points: 0 | |
| 9 | |
| 10 | |
| 11 A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices. | |
| 12 It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends. | |
| 13 Please check the results of hicInfo to validate this for your data. |