# HG changeset patch
# User bgruening
# Date 1576528321 18000
# Node ID bd11c6a972efd8a7c9d60b9a641a2d5f060a9386
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3b41d687ff30583540d055f6995de00530cca81d-dirty"
diff -r 000000000000 -r bd11c6a972ef chicViewpointBackgroundModel.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/chicViewpointBackgroundModel.xml Mon Dec 16 15:32:01 2019 -0500
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+
+ validate detected loops with protein peaks.
+
+ chicViewpointBackgroundModel
+ macros.xml
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diff -r 000000000000 -r bd11c6a972ef macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Mon Dec 16 15:32:01 2019 -0500
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+
+ \${GALAXY_SLOTS:-4}
+ 3.3.1
+
+ #if $use_range.select_use_range == "yes_use_range":
+ --range $range_min:$range_max
+ #end if
+
+
+
+
+ hicexplorer
+
+
+ @BINARY@ --version
+
+
+
+ #if $chromosome_list:
+ #set $chromosomes = []
+ #for $chrom in $chromosome_list:
+ #silent $chromosomes.append("'%s'" % $chrom.chromosomes)
+ #end for
+ #set $chromosome_string = ' '.join($chromosomes)
+ --chromosomes $chromosome_string
+ #end if
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+ 10.5281/zenodo.1133705
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+ #set $matrices = []
+ #set $mlabels = []
+ #for $counter, $i in enumerate($input_files):
+ ln -s '$i.matrix' '${counter}_matrix.$i.matrix.ext';
+ #silent $matrices.append( '\'%s_matrix.%s\'' % ($counter, $i.matrix.ext))
+
+ #if str($i.mlabel.value) != "":
+ #set $mlabels += ['\'%s\'' % ($i.mlabel.value)]
+ #else
+ #set $mlabels += ['\'%s\'' % ($i.matrix.name)]
+ #end if
+ #end for
+ #set $mlabels = ' '.join($mlabels)
+ #set $matrices = ' '.join($matrices)
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+ #if $advancedOpt.used_multiple_regions.used_multiple_regions_options == 'no':
+ #if $advancedOpt.used_multiple_regions.clustering.clustering_options == 'kmeans':
+ #if int($advancedOpt.used_multiple_regions.clustering.k_kmeans) > 0:
+ --kmeans $advancedOpt.used_multiple_regions.clustering.k_kmeans
+ #end if
+ #end if
+ #end if
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+.. class:: infomark
+
+For more information on the tools, please visit our `help site`_.
+
+If you would like to give us feedback or you run into any trouble, please send an email to deeptools@googlegroups.com
+
+This tool is developed by the `Bioinformatics and Deep-Sequencing Unit`_ at the `Max Planck Institute for Immunobiology and Epigenetics`_.
+
+.. _Bioinformatics and Deep-Sequencing Unit: http://www3.ie-freiburg.mpg.de/facilities/research-facilities/bioinformatics-and-deep-sequencing-unit/
+.. _Max Planck Institute for Immunobiology and Epigenetics: http://www3.ie-freiburg.mpg.de
+.. _help site: https://hicexplorer.readthedocs.org
+
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+ #import tempfile
+ #set $temp_dir = os.path.abspath(tempfile.mkdtemp())
+ #set files=[]
+ #set labels=[]
+ #for $i in $input_files:
+ #set $temp_input_handle = tempfile.NamedTemporaryFile( dir=$temp_dir )
+ #set $temp_input_path = $temp_input_handle.name
+ #silent $temp_input_handle.close()
+ #silent os.system("ln -s %s %s.bam" % (str($i.bamfile), $temp_input_path))
+ #silent os.system("ln -s %s %s.bam.bai" % (str($i.bamfile.metadata.bam_index), $temp_input_path))
+ #silent $files.append('%s.bam' % $temp_input_path)
+
+ ##set $files += [str($i.bamfile)]
+ #if str($i.label.value) != "":
+ #set $labels += ["\"%s\"" % ($i.label.value)]
+ #else
+ #set $labels += ["\"%s\"" % ($i.bamfile.name)]
+ #end if
+ #end for
+
+
+
+ #import tempfile
+ #set $temp_dir = os.path.abspath(tempfile.mkdtemp())
+ #set files=[]
+ #set labels=[]
+ #for $i in $input_files:
+ #set $temp_input_handle = tempfile.NamedTemporaryFile( dir=$temp_dir )
+ #set $temp_input_path = $temp_input_handle.name
+ #silent $temp_input_handle.close()
+ #silent os.system("ln -s %s %s.bw" % (str($i.bigwigfile), $temp_input_path))
+ #silent $files.append('%s.bw' % $temp_input_path)
+
+ ##set $files += [str($i.bigwigfile)]
+ #if str($i.label.value) != "":
+ #set $labels += ["\"%s\"" % ($i.label.value)]
+ #else
+ #set $labels += ["\"%s\"" % ($i.bigwigfile.name)]
+ #end if
+ #end for
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+ #if $source.ref_source=="history":
+ --genome $source.input1
+ #else:
+ --genome "${source.input1_2bit.fields.path}"
+ #end if
+
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+ ((
+ output['showOutputSettings'] == 'yes' and
+ output['saveMatrix'] is True
+ ))
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+ ((
+ output['showOutputSettings'] == 'yes' and
+ output['saveData'] is True
+ ))
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+ ((
+ output['showOutputSettings'] == 'yes' and
+ output['saveSortedRegions'] is True
+ ))
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diff -r 000000000000 -r bd11c6a972ef static/images/SRR027956.svg
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/static/images/SRR027956.svg Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,678 @@
+
+
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+
diff -r 000000000000 -r bd11c6a972ef static/images/SRR0279XX_perChr_eigenvector1.png
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diff -r 000000000000 -r bd11c6a972ef static/images/diagnostic_plot.png
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diff -r 000000000000 -r bd11c6a972ef static/images/hicAggregateContacts.png
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diff -r 000000000000 -r bd11c6a972ef static/images/hicCompareMatrices_QC_log2_m50_matrix_plot.png
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diff -r 000000000000 -r bd11c6a972ef static/images/hicCompareMatrices_m1bp_over_gst_log2_m50_matrix_plot.png
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diff -r 000000000000 -r bd11c6a972ef static/images/hicCorrelate_Dmel_heatmap.png
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diff -r 000000000000 -r bd11c6a972ef static/images/hicCorrelate_spearman_scatter.png
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diff -r 000000000000 -r bd11c6a972ef static/images/hicMergeMatrixBins_Xchr.png
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diff -r 000000000000 -r bd11c6a972ef static/images/hicPCA.png
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diff -r 000000000000 -r bd11c6a972ef static/images/hicQC_distance.png
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diff -r 000000000000 -r bd11c6a972ef static/images/hicQC_read_orientation.png
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diff -r 000000000000 -r bd11c6a972ef static/images/hicQC_unmappable_and_non_unique.png
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diff -r 000000000000 -r bd11c6a972ef static/images/master_TADs_plot.png
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diff -r 000000000000 -r bd11c6a972ef static/images/pulication_plots_viewpoint.png
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diff -r 000000000000 -r bd11c6a972ef static/images/z-score.svg
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/static/images/z-score.svg Mon Dec 16 15:32:01 2019 -0500
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+
+
+
\ No newline at end of file
diff -r 000000000000 -r bd11c6a972ef test-data/Li_et_al_2015.cool
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diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/FL-E13-5_chr1.cool
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diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/MB-E10-5_chr1.cool
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diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/background.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/background.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,1002 @@
+Relative position size nbinom prob nbinom max value mean value
+-500000 58.254577634279 0.998604709282 1.333333333333 0.000105073709
+-499000 10.000013353187 0.991925224088 1.500000000000 0.000105073709
+-498000 72.266262784304 0.998828265884 1.200000000000 0.000111077921
+-497000 51.093422441771 0.998183086351 1.000000000000 0.000120084239
+-496000 86.575220693033 0.998899865570 0.800000000000 0.000123086345
+-495000 72.441590407550 0.998655447638 0.800000000000 0.000126088451
+-494000 75.085350270547 0.998668414055 1.000000000000 0.000129090557
+-493000 71.967411178924 0.998612779641 1.000000000000 0.000129090557
+-492000 77.026231982211 0.998763649786 1.200000000000 0.000123086345
+-491000 96.154018360868 0.999129584825 1.000000000000 0.000108075815
+-490000 70.641792331241 0.998918479365 1.400000000000 0.000099069497
+-489000 72.297114570842 0.998971709245 0.800000000000 0.000096067391
+-488000 55.276417890737 0.998907322028 0.800000000000 0.000078054755
+-487000 75.866231077639 0.999020037562 0.600000000000 0.000096067391
+-486000 77.908114872120 0.999075493568 0.600000000000 0.000093065285
+-485000 70.196050128375 0.998940963837 0.600000000000 0.000096067391
+-484000 48.306835304302 0.998789125810 0.600000000000 0.000078054755
+-483000 65.826727385050 0.999115985283 0.600000000000 0.000075052649
+-482000 10.000003651221 0.996523342626 0.400000000000 0.000045031590
+-481000 48.188933357556 0.999179280048 0.400000000000 0.000051035802
+-480000 10.000001173914 0.997216871755 0.400000000000 0.000036025272
+-479000 10.000002160096 0.996985563716 0.400000000000 0.000039027378
+-478000 61.980720096540 0.999287603012 0.800000000000 0.000057040014
+-477000 47.193502172887 0.999138448161 0.600000000000 0.000054037908
+-476000 75.435666576826 0.999477638616 0.600000000000 0.000051035802
+-475000 83.258498044933 0.999385868055 0.600000000000 0.000066046332
+-474000 64.452927063111 0.999206823435 0.600000000000 0.000066046332
+-473000 68.592799621533 0.999390093904 0.600000000000 0.000054037908
+-472000 48.567204011739 0.999139405277 0.600000000000 0.000054037908
+-471000 10.000004448331 0.996292395667 0.600000000000 0.000048033696
+-470000 10.000000920405 0.995831238986 1.400000000000 0.000054037908
+-469000 10.000003872489 0.994909340544 1.400000000000 0.000066046332
+-468000 63.250123985231 0.999022818205 1.400000000000 0.000081056861
+-467000 51.399551404579 0.998558644000 1.400000000000 0.000096067391
+-466000 64.883458129266 0.998762977849 1.000000000000 0.000105073709
+-465000 86.383451689662 0.999139519880 0.800000000000 0.000096067391
+-464000 64.657320565128 0.998830168725 1.000000000000 0.000099069497
+-463000 69.011442263596 0.998889631783 1.000000000000 0.000099069497
+-462000 120.365580780362 0.999304923056 1.000000000000 0.000108075815
+-461000 83.873478804403 0.999085832019 1.000000000000 0.000099069497
+-460000 76.791436688795 0.998822607239 0.800000000000 0.000117082133
+-459000 71.300309154477 0.998707418591 1.000000000000 0.000120084239
+-458000 70.551044686671 0.998794143443 0.600000000000 0.000111077921
+-457000 88.657625851365 0.999084917164 0.800000000000 0.000105073709
+-456000 66.985331452249 0.998825498193 0.800000000000 0.000102071603
+-455000 212.376735013798 0.999710065148 0.600000000000 0.000078054755
+-454000 62.703317289439 0.999261443476 0.600000000000 0.000060042120
+-453000 45.696967611307 0.998932417121 0.600000000000 0.000063044226
+-452000 82.313181248075 0.999548168551 0.600000000000 0.000048033696
+-451000 61.955802866608 0.999249835457 0.600000000000 0.000060042120
+-450000 71.163546816639 0.999118429295 1.000000000000 0.000081056861
+-449000 57.404577886000 0.998868956077 1.000000000000 0.000084058967
+-448000 78.889496868591 0.999175114488 1.000000000000 0.000084058967
+-447000 59.455705064746 0.998872066360 1.000000000000 0.000087061073
+-446000 69.521205032032 0.998763823049 1.000000000000 0.000111077921
+-445000 99.901425243691 0.999325366218 0.800000000000 0.000087061073
+-444000 57.825377611967 0.998714905749 1.400000000000 0.000096067391
+-443000 74.780716852780 0.999190452885 1.400000000000 0.000078054755
+-442000 70.795891257506 0.998917147837 1.400000000000 0.000099069497
+-441000 51.279215449017 0.998912746029 0.600000000000 0.000072050543
+-440000 76.363418055254 0.999244164363 0.600000000000 0.000075052649
+-439000 74.401139539007 0.999187307338 0.800000000000 0.000078054755
+-438000 52.200730226460 0.998448424743 1.000000000000 0.000105073709
+-437000 79.600679358263 0.998978528045 1.200000000000 0.000105073709
+-436000 65.518164898731 0.998581394634 1.400000000000 0.000120084239
+-435000 83.113767900020 0.998826184992 1.400000000000 0.000126088451
+-434000 87.224364940701 0.998854838893 1.400000000000 0.000129090557
+-433000 75.813600628662 0.998711656456 1.000000000000 0.000126088451
+-432000 80.251971190922 0.998928939123 0.800000000000 0.000111077921
+-431000 81.118152083963 0.999054810148 1.200000000000 0.000099069497
+-430000 46.645162128342 0.998373997332 1.600000000000 0.000099069497
+-429000 10.000009135000 0.993529752711 1.600000000000 0.000084058967
+-428000 89.214618565795 0.999348737969 1.200000000000 0.000075052649
+-427000 64.746320901683 0.999136147372 1.200000000000 0.000072050543
+-426000 67.545312123841 0.999277488877 0.600000000000 0.000063044226
+-425000 66.434418164630 0.999367098414 0.600000000000 0.000054037908
+-424000 65.731114715760 0.999363103373 0.600000000000 0.000054037908
+-423000 64.761967362383 0.999276749556 0.400000000000 0.000060042120
+-422000 63.774061741502 0.999234797250 1.000000000000 0.000063044226
+-421000 94.801692942071 0.999359017655 0.800000000000 0.000078054755
+-420000 48.782646862202 0.998714497194 1.000000000000 0.000081056861
+-419000 101.998642427126 0.999361998958 1.000000000000 0.000084058967
+-418000 61.774171291822 0.998984571607 1.000000000000 0.000081056861
+-417000 77.967780354792 0.999225645233 0.600000000000 0.000078054755
+-416000 53.461719528383 0.999129373090 0.400000000000 0.000060042120
+-415000 71.749588278785 0.999157090945 0.800000000000 0.000078054755
+-414000 56.925503004058 0.998733617143 1.400000000000 0.000093065285
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+461000 74.543018827171 0.998473634038 0.800000000000 0.000147103193
+462000 63.337319446090 0.998204073767 0.800000000000 0.000147103193
+463000 117.089896011864 0.999027727546 0.800000000000 0.000147103193
+464000 91.138003901288 0.998496746777 1.800000000000 0.000177124253
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+466000 52.209334348546 0.997159438011 2.400000000000 0.000192134783
+467000 77.918569531358 0.998034146232 2.800000000000 0.000198138995
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+470000 105.325058737937 0.998676526339 1.400000000000 0.000180126359
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+472000 71.036732364957 0.998055374489 1.200000000000 0.000183128465
+473000 58.839853998831 0.997768804625 1.200000000000 0.000174122147
+474000 109.506948227434 0.998942877974 1.000000000000 0.000150105299
+475000 73.687080792836 0.998676219719 0.600000000000 0.000126088451
+476000 86.562200266338 0.998926533547 0.600000000000 0.000120084239
+477000 78.601283549403 0.998670347780 0.600000000000 0.000135094769
+478000 77.287682759273 0.998311780993 1.000000000000 0.000168117935
+479000 80.196363250368 0.998336155363 0.800000000000 0.000174122147
+480000 95.618679354949 0.998538823715 0.800000000000 0.000180126359
+481000 71.324679124414 0.998079961192 1.000000000000 0.000177124253
+482000 98.947326582471 0.998662082026 1.200000000000 0.000171120041
+483000 98.312778915279 0.998677055532 1.000000000000 0.000168117935
+484000 80.536358888257 0.998500685590 1.200000000000 0.000156109511
+485000 75.299149742118 0.998174557637 1.200000000000 0.000177124253
+486000 80.676043504302 0.998160484267 1.600000000000 0.000192134783
+487000 65.456290718619 0.997731312445 1.600000000000 0.000192134783
+488000 135.605664962437 0.998837097471 1.400000000000 0.000204143206
+489000 78.041126983216 0.997890938542 1.600000000000 0.000213149524
+490000 73.842941938827 0.998020155259 1.200000000000 0.000192134783
+491000 135.330452041151 0.998884251454 1.000000000000 0.000195136889
+492000 70.441325198247 0.997891524929 1.000000000000 0.000192134783
+493000 93.145208276513 0.998579085962 1.200000000000 0.000171120041
+494000 93.195291870240 0.998579645775 1.200000000000 0.000171120041
+495000 66.167995861224 0.997615723218 1.200000000000 0.000204143206
+496000 68.869469387443 0.998039511367 1.200000000000 0.000174122147
+497000 61.393255588548 0.997958646123 1.400000000000 0.000162113723
+498000 64.393702971434 0.998089554455 1.200000000000 0.000159111617
+499000 64.222140571019 0.998102497389 1.000000000000 0.000157610564
+500000 10.000000000000 1.000000000000 0.000000000000 0.000000000000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,11 @@
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+#Chromosome Start End Gene Sum of interactions Relative distance Raw target
+chr1 14274000 14279000 Eya1 673.0 -22000 7.00000
+chr1 14285000 14308000 Eya1 673.0 7000 389.40000
+chr1 14310000 14322000 Eya1 673.0 21000 54.80000
+chr1 14361000 14407000 Eya1 673.0 106000 21.20000
+chr1 14426000 14432000 Eya1 673.0 131000 2.40000
+chr1 14447000 14455000 Eya1 673.0 154000 4.40000
+chr1 14460000 14465000 Eya1 673.0 164000 3.20000
+chr1 14491000 14500000 Eya1 673.0 199000 17.65000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,7 @@
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3
+# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+#Chromosome Start End Gene Sum of interactions Relative distance Raw target
+chr1 19077000 19114000 Tfap2d 472.0 20000 344.80000
+chr1 19125000 19129000 Tfap2d 472.0 35000 7.80000
+chr1 19134000 19139000 Tfap2d 472.0 45000 8.40000
+chr1 19141000 19238000 Tfap2d 472.0 144000 47.40000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,9 @@
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3
+# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+#Chromosome Start End Gene Sum of interactions Relative distance Raw target
+chr1 4472000 4503000 Sox17 810.0 15000 566.20000
+chr1 4507000 4516000 Sox17 810.0 28000 38.80000
+chr1 4520000 4531000 Sox17 810.0 43000 10.40000
+chr1 4533000 4543000 Sox17 810.0 55000 6.80000
+chr1 4562000 4593000 Sox17 810.0 105000 25.00000
+chr1 4664000 4669000 Sox17 810.0 181000 1.20000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,11 @@
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3
+# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Sum of interactions Relative distance Raw target
+chr1 14274000 14279000 Eya1 832.0 -22000 0.00000
+chr1 14285000 14308000 Eya1 832.0 7000 479.80000
+chr1 14310000 14322000 Eya1 832.0 21000 52.80000
+chr1 14361000 14407000 Eya1 832.0 106000 36.00000
+chr1 14426000 14432000 Eya1 832.0 131000 9.00000
+chr1 14447000 14455000 Eya1 832.0 154000 12.40000
+chr1 14460000 14465000 Eya1 832.0 164000 7.60000
+chr1 14491000 14500000 Eya1 832.0 199000 15.75000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,7 @@
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3
+# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Sum of interactions Relative distance Raw target
+chr1 19077000 19114000 Tfap2d 800.0 20000 527.80000
+chr1 19125000 19129000 Tfap2d 800.0 35000 8.80000
+chr1 19134000 19139000 Tfap2d 800.0 45000 11.20000
+chr1 19141000 19238000 Tfap2d 800.0 144000 163.00000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,9 @@
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3
+# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Sum of interactions Relative distance Raw target
+chr1 4472000 4503000 Sox17 978.0 15000 724.40000
+chr1 4507000 4516000 Sox17 978.0 28000 19.00000
+chr1 4520000 4531000 Sox17 978.0 43000 22.20000
+chr1 4533000 4543000 Sox17 978.0 55000 12.20000
+chr1 4562000 4593000 Sox17 978.0 105000 23.20000
+chr1 4664000 4669000 Sox17 978.0 181000 5.40000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicAggregateStatistic/batch_mode_file_names.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode_file_names.txt Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,6 @@
+FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed
+MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed
+FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
+MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
+FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed
+MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed
\ No newline at end of file
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,11 @@
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+#Chromosome Start End Gene Sum of interactions Relative distance Raw target
+chr1 14274000 14279000 Eya1 673.0 -22000 7.00000
+chr1 14285000 14308000 Eya1 673.0 7000 389.40000
+chr1 14310000 14322000 Eya1 673.0 21000 54.80000
+chr1 14361000 14407000 Eya1 673.0 106000 21.20000
+chr1 14426000 14432000 Eya1 673.0 131000 2.40000
+chr1 14447000 14455000 Eya1 673.0 154000 4.40000
+chr1 14460000 14465000 Eya1 673.0 164000 3.20000
+chr1 14491000 14500000 Eya1 673.0 199000 17.65000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,11 @@
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3
+# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Sum of interactions Relative distance Raw target
+chr1 14274000 14279000 Eya1 832.0 -22000 0.00000
+chr1 14285000 14308000 Eya1 832.0 7000 479.80000
+chr1 14310000 14322000 Eya1 832.0 21000 52.80000
+chr1 14361000 14407000 Eya1 832.0 106000 36.00000
+chr1 14426000 14432000 Eya1 832.0 131000 9.00000
+chr1 14447000 14455000 Eya1 832.0 154000 12.40000
+chr1 14460000 14465000 Eya1 832.0 164000 7.60000
+chr1 14491000 14500000 Eya1 832.0 199000 15.75000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,11 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96904
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,17 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00335
+chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.21097
+chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.25281
+chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.10924
+chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.12863
+chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.32025
+chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.35033
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,18 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00335
+chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96904
+chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.21097
+chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.25281
+chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.10924
+chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.12863
+chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.32025
+chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.35033
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,11 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.60118
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,13 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.25943
+chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.40802
+chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00004
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,14 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.25943
+chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.40802
+chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.60118
+chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00004
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,10 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,16 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.43072
+chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00105
+chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.12754
+chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.40725
+chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.36639
+chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.16231
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,16 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.43072
+chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00105
+chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.12754
+chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.40725
+chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.36639
+chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.16231
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,12 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586
+chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,16 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366
+chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002
+chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706
+chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523
+chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210
+chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,18 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366
+chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586
+chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002
+chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706
+chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523
+chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210
+chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425
+chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,11 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.65094
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,13 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.27744
+chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.45206
+chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00005
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,14 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.27744
+chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.45206
+chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.65094
+chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00005
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,10 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,16 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.44082
+chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00117
+chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.16402
+chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.37847
+chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.46860
+chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.30594
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,16 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.44082
+chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00117
+chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.16402
+chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.37847
+chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.46860
+chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.30594
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,12 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586
+chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,16 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366
+chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002
+chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706
+chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523
+chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210
+chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,18 @@
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366
+chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586
+chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002
+chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706
+chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523
+chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210
+chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425
+chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicDifferentialTest/rejectedFilesList.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/rejectedFilesList.txt Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,3 @@
+FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed
+FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed
+FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed
\ No newline at end of file
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicPlotViewpoint/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.png
Binary file test-data/cHi-C/chicPlotViewpoint/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.png has changed
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicPlotViewpoint/batchMode/two/Eya1_FL-E13-5_MB-E10-5_chr1_chr1_14300280.png
Binary file test-data/cHi-C/chicPlotViewpoint/batchMode/two/Eya1_FL-E13-5_MB-E10-5_chr1_chr1_14300280.png has changed
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicPlotViewpoint/batchMode/two/Sox17_FL-E13-5_MB-E10-5_chr1_chr1_4487435.png
Binary file test-data/cHi-C/chicPlotViewpoint/batchMode/two/Sox17_FL-E13-5_MB-E10-5_chr1_chr1_4487435.png has changed
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicPlotViewpoint/batchMode/two/Tfap2d_FL-E13-5_MB-E10-5_chr1_chr1_19093103.png
Binary file test-data/cHi-C/chicPlotViewpoint/batchMode/two/Tfap2d_FL-E13-5_MB-E10-5_chr1_chr1_19093103.png has changed
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicQualityControl/histogram.png
Binary file test-data/cHi-C/chicQualityControl/histogram.png has changed
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicQualityControl/new_referencepoints.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,35 @@
+chr1 4487435 4487435 Sox17
+chr1 14300280 14300280 Eya1
+chr1 19093103 19093103 Tfap2d
+chr1 24202042 24202042 Col9a1
+chr1 33776741 33776741 Rab23
+chr1 38684089 38684089 Aff3
+chr1 42753991 42753991 Pou3f3
+chr1 52176282 52176282 Stat1
+chr1 53118507 53118507 Mstn
+chr1 57028178 57028178 Satb2
+chr1 59821123 59821123 Bmpr2
+chr1 66991630 66991630 Myl1
+chr1 74648029 74648029 Stk36
+chr1 74818466 74818466 Wnt6
+chr1 75356867 75356867 Des
+chr1 77511663 77511663 Epha4
+chr1 78193711 78193711 Pax3
+chr1 89102386 89102386 Chrng
+chr1 93355905 93355905 Per2
+chr1 93698054 93698054 Twist2
+chr1 107677300 107677300 Tnfrsf11a
+chr1 120950196 120950196 Gli2
+chr1 122499064 122499064 En1
+chr1 127808791 127808791 Lypd1
+chr1 135934092 135934092 Fmod
+chr1 136186581 136186581 MyoG
+chr1 164004278 164006270 mm712
+chr1 164147754 164147754 Dnm3os
+chr1 165243781 165243781 Prrx1
+chr1 165333772 165333772 Gorab
+chr1 169619689 169619689 Lmx1a
+chr1 182823250 182823250 Lefty2
+chr1 182865170 182865170 Lefty1
+chr1 188529871 188529871 Tgfb2
+chr1 194979306 194979306 Irf6
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicQualityControl/new_referencepoints.bed_raw_filter
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed_raw_filter Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,45 @@
+# Created with chicQualityControl version 3.3
+# Chromosome Start End Sparsity 0_matrix.cool Sparsity 1_matrix.cool
+chr1 4487435 4487435 Sox17 0.14485514485514486 0.16083916083916083
+chr1 14300280 14300280 Eya1 0.14285714285714285 0.1938061938061938
+chr1 19093103 19093103 Tfap2d 0.1048951048951049 0.16683316683316685
+chr1 19198995 19198995 Tfap2b 0.01898101898101898 0.016983016983016984
+chr1 24202042 24202042 Col9a1 0.10589410589410589 0.12787212787212787
+chr1 33776741 33776741 Rab23 0.15484515484515485 0.2137862137862138
+chr1 38684089 38684089 Aff3 0.11588411588411589 0.11388611388611389
+chr1 42753991 42753991 Pou3f3 0.04995004995004995 0.07592407592407592
+chr1 52176282 52176282 Stat1 0.19080919080919082 0.22777222777222778
+chr1 52557292 52557292 Nab1 0.02197802197802198 0.024975024975024976
+chr1 53118507 53118507 Mstn 0.3116883116883117 0.37462537462537465
+chr1 57028178 57028178 Satb2 0.12287712287712288 0.14385614385614387
+chr1 59821123 59821123 Bmpr2 0.14085914085914086 0.16983016983016982
+chr1 66991630 66991630 Myl1 0.0919080919080919 0.09290709290709291
+chr1 74648029 74648029 Stk36 0.2777222777222777 0.3356643356643357
+chr1 74818466 74818466 Wnt6 0.29270729270729273 0.34165834165834164
+chr1 74838593 74838593 Wnt10a 0.00999000999000999 0.008991008991008992
+chr1 74998246 74998246 Ihh 0.008991008991008992 0.003996003996003996
+chr1 75356867 75356867 Des 0.18081918081918083 0.21678321678321677
+chr1 77511663 77511663 Epha4 0.15684315684315683 0.22277722277722278
+chr1 78193711 78193711 Pax3 0.24375624375624375 0.3096903096903097
+chr1 89102386 89102386 Chrng 0.16783216783216784 0.2217782217782218
+chr1 93355905 93355905 Per2 0.15384615384615385 0.16483516483516483
+chr1 93698054 93698054 Twist2 0.22277722277722278 0.23476523476523475
+chr1 94076918 94076918 Hdac4 0.0 0.0
+chr1 107677300 107677300 Tnfrsf11a 0.14685314685314685 0.16383616383616384
+chr1 120950196 120950196 Gli2 0.13986013986013987 0.2007992007992008
+chr1 122499064 122499064 En1 0.1008991008991009 0.11988011988011989
+chr1 127808791 127808791 Lypd1 0.18681318681318682 0.22977022977022976
+chr1 135934092 135934092 Fmod 0.3516483516483517 0.4145854145854146
+chr1 136186581 136186581 MyoG 0.07392607392607392 0.09090909090909091
+chr1 152313295 152313295 Prg4 0.00999000999000999 0.006993006993006993
+chr1 164004278 164006270 mm712 0.26173826173826176 0.2867132867132867
+chr1 164147754 164147754 Dnm3os 0.24875124875124874 0.24675324675324675
+chr1 165243781 165243781 Prrx1 0.36063936063936064 0.34065934065934067
+chr1 165333772 165333772 Gorab 0.36863136863136864 0.3956043956043956
+chr1 169619689 169619689 Lmx1a 0.11888111888111888 0.16783216783216784
+chr1 170362300 170362300 Pbx1 0.003996003996003996 0.002997002997002997
+chr1 180249284 180249284 Gm16586 0.0 0.0
+chr1 182823250 182823250 Lefty2 0.27472527472527475 0.33266733266733267
+chr1 182865170 182865170 Lefty1 0.25674325674325676 0.3086913086913087
+chr1 188529871 188529871 Tgfb2 0.13486513486513488 0.16583416583416583
+chr1 194979306 194979306 Irf6 0.12987012987012986 0.15284715284715283
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicQualityControl/new_referencepoints.bed_rejected_filter
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed_rejected_filter Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,8 @@
+chr1 19198995 19198995 Tfap2b
+chr1 52557292 52557292 Nab1
+chr1 74838593 74838593 Wnt10a
+chr1 74998246 74998246 Ihh
+chr1 94076918 94076918 Hdac4
+chr1 152313295 152313295 Prg4
+chr1 170362300 170362300 Pbx1
+chr1 180249284 180249284 Gm16586
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicQualityControl/sparsity.png
Binary file test-data/cHi-C/chicQualityControl/sparsity.png has changed
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,8 @@
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.01042503066537725509 7.81112575817000021061 5.59999999999999964473
+chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.10421572859864158822 3.78135593591500018817 39.00000000000000000000
+chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.05171206541410811042 3.19033393500999995496 10.19999999999999928946
+chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.04670037874744681350 3.51709033858399999772 9.80000000000000071054
+chr1 14480000 14488000 Eya1 673.0 184000 0.01129271916799999900 0.00000005723969254134 19.28508294646199772160 7.59999999999999875655
+chr1 14491000 14501000 Eya1 673.0 200000 0.03068350668399999828 0.00000000000003064216 56.96782483342801128856 20.64999999999999857891
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,10 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev
+# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Mode: x-fold background with 1.5
+# Used p-value: 0.2
+#
+chr1 14274000 14278000
+chr1 14296000 14298000
+chr1 14314000 14319000
+chr1 14480000 14488000
+chr1 14491000 14501000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_2/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_2/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,8 @@
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 14274000 14279000 Eya1 673.0 -26000 0.01040118870499999980 0.00284160000885891328 9.15400589712000112286 7.00000000000000000000
+chr1 14285000 14303000 Eya1 673.0 -1000 0.50282317979099999672 0.00136523720299208673 11.07298757284899970443 338.40000000000003410605
+chr1 14304000 14308000 Eya1 673.0 4000 0.05438335809800000364 0.04630738638109899163 4.54925916911999994596 36.60000000000000142109
+chr1 14310000 14322000 Eya1 673.0 11000 0.08142644873500000380 0.00000295000019367997 16.90046348151199850918 54.79999999999999715783
+chr1 14361000 14395000 Eya1 673.0 61000 0.01872213967299999823 0.00000368259652272496 14.85031269307799917101 12.60000000000000142109
+chr1 14491000 14500000 Eya1 673.0 199000 0.02622585438099999874 0.00000000000000932587 49.39210160776001146132 17.64999999999999857891
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_2_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_2_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,10 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev
+# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Mode: loose p-value with 0.5
+# Used p-value: 0.2
+#
+chr1 14274000 14279000
+chr1 14285000 14308000
+chr1 14310000 14322000
+chr1 14361000 14395000
+chr1 14491000 14500000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,8 @@
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.01042503066537725509 7.81112575817000021061 5.59999999999999964473
+chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.10421572859864158822 3.78135593591500018817 39.00000000000000000000
+chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.05171206541410811042 3.19033393500999995496 10.19999999999999928946
+chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.04670037874744681350 3.51709033858399999772 9.80000000000000071054
+chr1 14480000 14488000 Eya1 673.0 184000 0.01129271916799999900 0.00000005723969254134 19.28508294646199772160 7.59999999999999875655
+chr1 14491000 14501000 Eya1 673.0 200000 0.03068350668399999828 0.00000000000003064216 56.96782483342801128856 20.64999999999999857891
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,7 @@
+# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 14295000 14298000 Eya1 832.0 -3000 0.05985576923100000002 0.06113759528369666629 4.79015312599299925012 49.79999999999999715783
+chr1 14426000 14432000 Eya1 832.0 130000 0.01081730769300000110 0.00000042985602966006 13.72351582211000042832 9.00000000000000000000
+chr1 14447000 14455000 Eya1 832.0 149000 0.01490384615199999950 0.00000000000012301271 22.36493893927400122834 12.39999999999999857891
+chr1 14460000 14465000 Eya1 832.0 162000 0.00913461538499999934 0.00001124312488187673 12.15366029908999934150 7.59999999999999964473
+chr1 14491000 14501000 Eya1 832.0 200000 0.02253605769199999720 0.00000000000003064216 41.39757163433100117800 18.75000000000000000000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,10 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3
+# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Mode: x-fold background with 1.5
+# Used p-value: 0.2
+#
+chr1 14274000 14278000
+chr1 14296000 14298000
+chr1 14314000 14319000
+chr1 14480000 14488000
+chr1 14491000 14501000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,10 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3
+# targetFolder/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Mode: x-fold background with 1.5
+# Used p-value: 0.2
+#
+chr1 14295000 14298000
+chr1 14426000 14432000
+chr1 14447000 14455000
+chr1 14460000 14465000
+chr1 14491000 14501000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,8 @@
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.01042503066537725509 7.81112575817000021061 5.59999999999999964473
+chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.10421572859864158822 3.78135593591500018817 39.00000000000000000000
+chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.05171206541410811042 3.19033393500999995496 10.19999999999999928946
+chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.04670037874744681350 3.51709033858399999772 9.80000000000000071054
+chr1 14480000 14488000 Eya1 673.0 184000 0.01129271916799999900 0.00000005723969254134 19.28508294646199772160 7.59999999999999875655
+chr1 14491000 14501000 Eya1 673.0 200000 0.03068350668399999828 0.00000000000003064216 56.96782483342801128856 20.64999999999999857891
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,10 @@
+# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 19089000 19091000 Tfap2d 472.0 -3000 0.06101694915199999680 0.18835888966198111039 4.06818820852600016025 28.80000000000000071054
+chr1 19104000 19106000 Tfap2d 472.0 11000 0.02245762711799999950 0.11671915718551462149 3.62722049649999966903 10.59999999999999964473
+chr1 19109000 19114000 Tfap2d 472.0 18000 0.03940677966200000631 0.00080680261510490681 9.61739201792699915927 18.60000000000000142109
+chr1 19125000 19129000 Tfap2d 472.0 33000 0.01652542372999999884 0.00829653069244939978 7.28507499155399962376 7.79999999999999982236
+chr1 19133000 19138000 Tfap2d 472.0 41000 0.01949152542399999744 0.00041957482022692005 9.72184228688099949522 9.19999999999999928946
+chr1 19197000 19202000 Tfap2d 472.0 108000 0.01059322033899999863 0.00398884532051024809 10.24326734149200035517 5.00000000000000000000
+chr1 19227000 19233000 Tfap2d 472.0 137000 0.01186440677899999914 0.00244241040005155341 14.41899403645599875290 5.59999999999999964473
+chr1 19254000 19261000 Tfap2d 472.0 163000 0.01355932203300000069 0.00004326025137579848 19.68794216164500454624 6.39999999999999946709
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,8 @@
+# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 4509000 4515000 Sox17 810.0 23000 0.03432098765399999724 0.00000160319175224188 11.55191083898800030738 27.80000000000000071054
+chr1 4561000 4567000 Sox17 810.0 75000 0.01432098765400000029 0.00000102319718320310 11.23656007944399881637 11.59999999999999964473
+chr1 4585000 4590000 Sox17 810.0 98000 0.00987654320999999807 0.00037019878415911478 8.98479195802099894763 8.00000000000000000000
+chr1 4652000 4658000 Sox17 810.0 169000 0.00740740740700000008 0.00005538687174366785 11.12107213938599947767 6.00000000000000000000
+chr1 4499000 4500000 Sox17 810.0 12000 0.00987654320999999981 0.15859163588059266292 1.65903762227799989049 8.00000000000000000000
+chr1 4501000 4502000 Sox17 810.0 14000 0.00765432098799999957 0.17926099806325068720 1.57677828943600006895 6.20000000000000017764
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_4_significant_files.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4_significant_files.txt Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,3 @@
+FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed
+FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
+FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
\ No newline at end of file
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,10 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev
+# chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Mode: x-fold background with 1.5
+# Used p-value: 0.2
+#
+chr1 14274000 14278000
+chr1 14296000 14298000
+chr1 14314000 14319000
+chr1 14480000 14488000
+chr1 14491000 14501000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,13 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev
+# chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
+# Mode: x-fold background with 1.5
+# Used p-value: 0.2
+#
+chr1 19089000 19091000
+chr1 19104000 19106000
+chr1 19109000 19114000
+chr1 19125000 19129000
+chr1 19133000 19138000
+chr1 19197000 19202000
+chr1 19227000 19233000
+chr1 19254000 19261000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,10 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev
+# chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed
+# Mode: x-fold background with 1.5
+# Used p-value: 0.2
+#
+chr1 4499000 4502000
+chr1 4509000 4515000
+chr1 4561000 4567000
+chr1 4585000 4590000
+chr1 4652000 4658000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_4_target_list.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target_list.txt Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,3 @@
+FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed
+FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
\ No newline at end of file
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,8 @@
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 14274000 14279000 Eya1 673.0 -26000 0.01040118870499999980 0.00284160000885891328 9.15400589712000112286 7.00000000000000000000
+chr1 14285000 14303000 Eya1 673.0 -1000 0.50282317979099999672 0.00136523720299208673 11.07298757284899970443 338.40000000000003410605
+chr1 14304000 14308000 Eya1 673.0 4000 0.05438335809800000364 0.04630738638109899163 4.54925916911999994596 36.60000000000000142109
+chr1 14310000 14322000 Eya1 673.0 11000 0.08142644873500000380 0.00000295000019367997 16.90046348151199850918 54.79999999999999715783
+chr1 14361000 14395000 Eya1 673.0 61000 0.01872213967299999823 0.00000368259652272496 14.85031269307799917101 12.60000000000000142109
+chr1 14491000 14500000 Eya1 673.0 199000 0.02622585438099999874 0.00000000000000932587 49.39210160776001146132 17.64999999999999857891
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,8 @@
+# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 19097000 19099000 Tfap2d 472.0 4000 0.04322033898299999788 0.18510915606880684603 3.09466471690400002359 20.39999999999999857891
+chr1 19103000 19106000 Tfap2d 472.0 11000 0.03305084745700000159 0.03717817323565530963 5.08894228542100002244 15.60000000000000142109
+chr1 19110000 19114000 Tfap2d 472.0 18000 0.03135593220400000047 0.00456343459440844423 7.84960476513000049437 14.79999999999999893419
+chr1 19126000 19129000 Tfap2d 472.0 33000 0.01271186440799999991 0.01781395819889997068 5.68520760692500015665 6.00000000000000000000
+chr1 19134000 19137000 Tfap2d 472.0 41000 0.01271186440799999991 0.00778984492262324579 6.25346808942800080899 6.00000000000000000000
+chr1 19162000 19198000 Tfap2d 472.0 69000 0.02966101695299999674 0.00000060908645727054 24.93693789855100106934 14.00000000000000532907
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,8 @@
+# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 4483000 4496000 Sox17 810.0 0 0.64098765432000004427 0.00000017949046104970 15.90973968251499925941 519.20000000000004547474
+chr1 4497000 4503000 Sox17 810.0 12000 0.04592592592699999698 0.00009501601454375841 8.17222136878799965132 37.19999999999999573674
+chr1 4507000 4516000 Sox17 810.0 23000 0.04790123456699999643 0.00000000479943529363 15.54534421085400097695 38.80000000000000426326
+chr1 4533000 4543000 Sox17 810.0 46000 0.00839506173000000022 0.00536916279076038450 5.36115769549400056349 6.79999999999999893419
+chr1 4562000 4565000 Sox17 810.0 75000 0.00814814814800000030 0.00087160464483748701 6.21039574622800039094 6.59999999999999964473
+chr1 4567000 4585000 Sox17 810.0 81000 0.00814814814699999987 0.00084968562666110081 6.38963961746400066488 6.60000000000000053291
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,11 @@
+# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 14295000 14303000 Eya1 832.0 -1000 0.51754807692400006669 0.00019954744684358428 10.99424166368200062038 430.60000000000002273737
+chr1 14304000 14307000 Eya1 832.0 4000 0.03052884615399999862 0.12043367620410594387 2.40926082355099957510 25.39999999999999857891
+chr1 14311000 14322000 Eya1 832.0 11000 0.05841346153899999727 0.00001294028787446333 12.63215080382700250539 48.59999999999999431566
+chr1 14369000 14382000 Eya1 832.0 69000 0.00793269231000000123 0.00220510219722336309 6.44339861264899926852 6.59999999999999875655
+chr1 14391000 14407000 Eya1 832.0 106000 0.01201923077000000006 0.00000515283260571486 11.00547257592000072179 10.00000000000000000000
+chr1 14426000 14432000 Eya1 832.0 130000 0.01081730769300000110 0.00000042985602966006 13.72351582211000042832 9.00000000000000000000
+chr1 14447000 14455000 Eya1 832.0 149000 0.01490384615199999950 0.00000000000012301271 22.36493893927400122834 12.39999999999999857891
+chr1 14460000 14465000 Eya1 832.0 162000 0.00913461538499999934 0.00001124312488187673 12.15366029908999934150 7.59999999999999964473
+chr1 14491000 14500000 Eya1 832.0 199000 0.01893028846099999857 0.00000000000000932587 35.26961282318300305860 15.75000000000000000000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,10 @@
+# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 19077000 19082000 Tfap2d 800.0 -15000 0.01675000000000000100 0.00195382844240210574 8.20856302019300088091 13.40000000000000035527
+chr1 19083000 19095000 Tfap2d 800.0 0 0.41274999999999995026 0.00011621308769860228 18.49630381537900092326 330.19999999999998863132
+chr1 19096000 19114000 Tfap2d 800.0 3000 0.17700000000000001843 0.00042447176642534945 22.86014655871399980924 141.59999999999999431566
+chr1 19125000 19129000 Tfap2d 800.0 33000 0.01099999999999999936 0.00379145119303403444 4.83882643603000062171 8.80000000000000071054
+chr1 19135000 19139000 Tfap2d 800.0 43000 0.01175000000000000003 0.00015657417058367873 6.23967021246500053167 9.40000000000000035527
+chr1 19141000 19170000 Tfap2d 800.0 49000 0.02125000000000001193 0.00000543603606051324 15.65207577841900032922 17.00000000000000355271
+chr1 19195000 19208000 Tfap2d 800.0 105000 0.04900000000000001577 0.00000000000000000000 47.90516101420298866742 39.20000000000000284217
+chr1 19209000 19238000 Tfap2d 800.0 124000 0.09275000000000004075 0.00000000000000000000 112.06129567939001390187 74.20000000000000284217
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,9 @@
+# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
+chr1 4472000 4492000 Sox17 978.0 0 0.66196319018500004994 0.00000000202165995056 17.41734930604599895787 647.40000000000009094947
+chr1 4493000 4496000 Sox17 978.0 6000 0.02576687116499999652 0.03614683764250059550 2.69049295166299984317 25.20000000000000284217
+chr1 4497000 4503000 Sox17 978.0 12000 0.03946830265799999848 0.00007297810251505332 7.02344214143100042946 38.60000000000000142109
+chr1 4520000 4531000 Sox17 978.0 37000 0.02269938650399999994 0.00000000003034350549 10.91808266157200080215 22.20000000000000284217
+chr1 4562000 4566000 Sox17 978.0 78000 0.00920245398800000058 0.00000732123325153378 7.15040494335099996448 9.00000000000000000000
+chr1 4569000 4593000 Sox17 978.0 93000 0.01022494887899999885 0.00001986913191398543 8.54218878677400006438 9.99999999999999822364
+chr1 4664000 4669000 Sox17 978.0 179000 0.00552147239400000052 0.00001416173948909361 8.93206575494200016863 5.40000000000000035527
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,6 @@
+FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed
+MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed
+FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
+MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
+FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
+MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,13 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3
+# targetFolder/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Mode: loose p-value with 0.5
+# Used p-value: 0.2
+#
+chr1 14274000 14279000
+chr1 14285000 14308000
+chr1 14310000 14322000
+chr1 14361000 14407000
+chr1 14426000 14432000
+chr1 14447000 14455000
+chr1 14460000 14465000
+chr1 14491000 14500000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,9 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3
+# targetFolder/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
+# Mode: loose p-value with 0.5
+# Used p-value: 0.2
+#
+chr1 19077000 19114000
+chr1 19125000 19129000
+chr1 19134000 19139000
+chr1 19141000 19238000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,11 @@
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3
+# targetFolder/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed
+# Mode: loose p-value with 0.5
+# Used p-value: 0.2
+#
+chr1 4472000 4503000
+chr1 4507000 4516000
+chr1 4520000 4531000
+chr1 4533000 4543000
+chr1 4562000 4593000
+chr1 4664000 4669000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicSignificantInteractions/output_5_target_list.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target_list.txt Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,3 @@
+FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed
+FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
\ No newline at end of file
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicViewpoint/fileNames_one_matrix.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/fileNames_one_matrix.txt Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,3 @@
+FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed
+FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed
+FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicViewpoint/fileNames_two_matrices.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/fileNames_two_matrices.txt Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,6 @@
+FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed
+MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed
+FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed
+MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed
+FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed
+MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,405 @@
+# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw
+#
+chr1 14100000 14101000 Eya1 673.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000
+chr1 14101000 14102000 Eya1 673.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000
+chr1 14102000 14103000 Eya1 673.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000
+chr1 14103000 14104000 Eya1 673.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000
+chr1 14104000 14105000 Eya1 673.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000
+chr1 14105000 14106000 Eya1 673.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000
+chr1 14106000 14107000 Eya1 673.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000
+chr1 14107000 14108000 Eya1 673.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000
+chr1 14108000 14109000 Eya1 673.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000
+chr1 14109000 14110000 Eya1 673.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000
+chr1 14110000 14111000 Eya1 673.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000
+chr1 14111000 14112000 Eya1 673.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000
+chr1 14112000 14113000 Eya1 673.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000
+chr1 14113000 14114000 Eya1 673.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000
+chr1 14114000 14115000 Eya1 673.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000
+chr1 14115000 14116000 Eya1 673.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000
+chr1 14116000 14117000 Eya1 673.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000
+chr1 14117000 14118000 Eya1 673.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000
+chr1 14118000 14119000 Eya1 673.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000
+chr1 14119000 14120000 Eya1 673.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000
+chr1 14120000 14121000 Eya1 673.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000
+chr1 14121000 14122000 Eya1 673.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000
+chr1 14122000 14123000 Eya1 673.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000
+chr1 14123000 14124000 Eya1 673.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000
+chr1 14124000 14125000 Eya1 673.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000
+chr1 14125000 14126000 Eya1 673.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000
+chr1 14126000 14127000 Eya1 673.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000
+chr1 14127000 14128000 Eya1 673.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000
+chr1 14128000 14129000 Eya1 673.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000
+chr1 14129000 14130000 Eya1 673.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000
+chr1 14130000 14131000 Eya1 673.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000
+chr1 14131000 14132000 Eya1 673.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000
+chr1 14132000 14133000 Eya1 673.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000
+chr1 14133000 14134000 Eya1 673.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000
+chr1 14134000 14135000 Eya1 673.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000
+chr1 14135000 14136000 Eya1 673.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000
+chr1 14136000 14137000 Eya1 673.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000
+chr1 14137000 14138000 Eya1 673.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000
+chr1 14138000 14139000 Eya1 673.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000
+chr1 14139000 14140000 Eya1 673.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000
+chr1 14140000 14141000 Eya1 673.0 -160000 0.000891530461 0.849999946243 4.242405017910 0.600000000000
+chr1 14141000 14142000 Eya1 673.0 -159000 0.000891530461 0.869107683649 4.789812097144 0.600000000000
+chr1 14142000 14143000 Eya1 673.0 -158000 0.000891530461 0.851329217290 4.303889149198 0.600000000000
+chr1 14143000 14144000 Eya1 673.0 -157000 0.000891530461 0.855727455775 4.367181637306 0.600000000000
+chr1 14144000 14145000 Eya1 673.0 -156000 0.000891530461 0.873934387705 5.120143967809 0.600000000000
+chr1 14145000 14146000 Eya1 673.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000
+chr1 14146000 14147000 Eya1 673.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000
+chr1 14147000 14148000 Eya1 673.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000
+chr1 14148000 14149000 Eya1 673.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000
+chr1 14149000 14150000 Eya1 673.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000
+chr1 14150000 14151000 Eya1 673.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000
+chr1 14151000 14152000 Eya1 673.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000
+chr1 14152000 14153000 Eya1 673.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000
+chr1 14153000 14154000 Eya1 673.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000
+chr1 14154000 14155000 Eya1 673.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000
+chr1 14155000 14156000 Eya1 673.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000
+chr1 14156000 14157000 Eya1 673.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000
+chr1 14157000 14158000 Eya1 673.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000
+chr1 14158000 14159000 Eya1 673.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000
+chr1 14159000 14160000 Eya1 673.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000
+chr1 14160000 14161000 Eya1 673.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000
+chr1 14161000 14162000 Eya1 673.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000
+chr1 14162000 14163000 Eya1 673.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000
+chr1 14163000 14164000 Eya1 673.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000
+chr1 14164000 14165000 Eya1 673.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000
+chr1 14165000 14166000 Eya1 673.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000
+chr1 14166000 14167000 Eya1 673.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000
+chr1 14167000 14168000 Eya1 673.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000
+chr1 14168000 14169000 Eya1 673.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000
+chr1 14169000 14170000 Eya1 673.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000
+chr1 14170000 14171000 Eya1 673.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000
+chr1 14171000 14172000 Eya1 673.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000
+chr1 14172000 14173000 Eya1 673.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000
+chr1 14173000 14174000 Eya1 673.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000
+chr1 14174000 14175000 Eya1 673.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000
+chr1 14175000 14176000 Eya1 673.0 -125000 0.000297176820 0.789042220648 0.916568982282 0.200000000000
+chr1 14176000 14177000 Eya1 673.0 -124000 0.000297176820 0.798137256530 0.908160092485 0.200000000000
+chr1 14177000 14178000 Eya1 673.0 -123000 0.000297176820 0.785510253584 0.798302018335 0.200000000000
+chr1 14178000 14179000 Eya1 673.0 -122000 0.000297176820 0.799644194656 0.925135047590 0.200000000000
+chr1 14179000 14180000 Eya1 673.0 -121000 0.000297176820 0.790961581141 0.883834378206 0.200000000000
+chr1 14180000 14181000 Eya1 673.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000
+chr1 14181000 14182000 Eya1 673.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000
+chr1 14182000 14183000 Eya1 673.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000
+chr1 14183000 14184000 Eya1 673.0 -117000 0.000297176820 0.774846873828 0.860777829009 0.200000000000
+chr1 14184000 14185000 Eya1 673.0 -116000 0.000297176820 0.765795808398 0.791915602137 0.200000000000
+chr1 14185000 14186000 Eya1 673.0 -115000 0.000297176820 0.757379810911 0.761457309513 0.200000000000
+chr1 14186000 14187000 Eya1 673.0 -114000 0.000297176820 0.773895809279 0.811388936776 0.200000000000
+chr1 14187000 14188000 Eya1 673.0 -113000 0.000297176820 0.780251801078 0.891796850153 0.200000000000
+chr1 14188000 14189000 Eya1 673.0 -112000 0.000000000000 0.809192563048 0.000000000000 0.000000000000
+chr1 14189000 14190000 Eya1 673.0 -111000 0.000297176820 0.805959066383 1.064402690160 0.200000000000
+chr1 14190000 14191000 Eya1 673.0 -110000 0.000297176820 0.826154588365 1.207188418049 0.200000000000
+chr1 14191000 14192000 Eya1 673.0 -109000 0.000297176820 0.796608508060 1.010096430089 0.200000000000
+chr1 14192000 14193000 Eya1 673.0 -108000 0.000297176820 0.785369993572 0.951821635672 0.200000000000
+chr1 14193000 14194000 Eya1 673.0 -107000 0.000297176820 0.763585636187 0.824912085835 0.200000000000
+chr1 14194000 14195000 Eya1 673.0 -106000 0.000000000000 0.796206503792 0.000000000000 0.000000000000
+chr1 14195000 14196000 Eya1 673.0 -105000 0.000000000000 0.801881199084 0.000000000000 0.000000000000
+chr1 14196000 14197000 Eya1 673.0 -104000 0.000000000000 0.830453698245 0.000000000000 0.000000000000
+chr1 14197000 14198000 Eya1 673.0 -103000 0.001188707281 0.843960603767 5.424079472832 0.800000000000
+chr1 14198000 14199000 Eya1 673.0 -102000 0.001188707281 1.000000000000 5.499413910652 0.800000000000
+chr1 14199000 14200000 Eya1 673.0 -101000 0.001188707281 0.853858772997 5.822908849742 0.800000000000
+chr1 14200000 14201000 Eya1 673.0 -100000 0.001188707281 0.828442819541 4.888367915554 0.800000000000
+chr1 14201000 14202000 Eya1 673.0 -99000 0.001188707281 0.815159530773 4.499520464782 0.800000000000
+chr1 14202000 14203000 Eya1 673.0 -98000 0.000000000000 0.803890742201 0.000000000000 0.000000000000
+chr1 14203000 14204000 Eya1 673.0 -97000 0.000000000000 0.793812954579 0.000000000000 0.000000000000
+chr1 14204000 14205000 Eya1 673.0 -96000 0.000000000000 0.776513211062 0.000000000000 0.000000000000
+chr1 14205000 14206000 Eya1 673.0 -95000 0.000000000000 0.769795672212 0.000000000000 0.000000000000
+chr1 14206000 14207000 Eya1 673.0 -94000 0.000594353640 0.745179566394 1.546710160135 0.400000000000
+chr1 14207000 14208000 Eya1 673.0 -93000 0.000594353640 0.740519396446 1.488563161197 0.400000000000
+chr1 14208000 14209000 Eya1 673.0 -92000 0.000594353640 0.723302632894 1.093806079608 0.400000000000
+chr1 14209000 14210000 Eya1 673.0 -91000 0.000594353640 0.723801019412 1.031140105862 0.400000000000
+chr1 14210000 14211000 Eya1 673.0 -90000 0.000594353640 0.727642253997 1.020509795419 0.400000000000
+chr1 14211000 14212000 Eya1 673.0 -89000 0.000000000000 0.754315244689 0.000000000000 0.000000000000
+chr1 14212000 14213000 Eya1 673.0 -88000 0.000000000000 0.748521601906 0.000000000000 0.000000000000
+chr1 14213000 14214000 Eya1 673.0 -87000 0.000000000000 0.773106724449 0.000000000000 0.000000000000
+chr1 14214000 14215000 Eya1 673.0 -86000 0.000000000000 0.763860606499 0.000000000000 0.000000000000
+chr1 14215000 14216000 Eya1 673.0 -85000 0.000000000000 0.758432715512 0.000000000000 0.000000000000
+chr1 14216000 14217000 Eya1 673.0 -84000 0.000000000000 0.763116447672 0.000000000000 0.000000000000
+chr1 14217000 14218000 Eya1 673.0 -83000 0.000594353640 0.774521391995 1.466510373460 0.400000000000
+chr1 14218000 14219000 Eya1 673.0 -82000 0.000594353640 0.783854637009 1.546710160135 0.400000000000
+chr1 14219000 14220000 Eya1 673.0 -81000 0.000594353640 0.804191983653 1.816320184969 0.400000000000
+chr1 14220000 14221000 Eya1 673.0 -80000 0.000594353640 0.820453383054 2.106158514412 0.400000000000
+chr1 14221000 14222000 Eya1 673.0 -79000 0.000594353640 0.787759592071 1.885513335312 0.400000000000
+chr1 14222000 14223000 Eya1 673.0 -78000 0.000000000000 0.772054180765 0.000000000000 0.000000000000
+chr1 14223000 14224000 Eya1 673.0 -77000 0.000000000000 0.748083315410 0.000000000000 0.000000000000
+chr1 14224000 14225000 Eya1 673.0 -76000 0.000000000000 0.731431977548 0.000000000000 0.000000000000
+chr1 14225000 14226000 Eya1 673.0 -75000 0.000000000000 0.749949052776 0.000000000000 0.000000000000
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+chr1 14413000 14414000 Eya1 673.0 113000 0.000297176820 0.490923249210 0.290291642960 0.200000000000
+chr1 14414000 14415000 Eya1 673.0 114000 0.000297176820 0.453380733495 0.286096676989 0.200000000000
+chr1 14415000 14416000 Eya1 673.0 115000 0.000297176820 0.469666167625 0.288598980306 0.200000000000
+chr1 14416000 14417000 Eya1 673.0 116000 0.000594353640 0.505935664500 0.664358726512 0.400000000000
+chr1 14417000 14418000 Eya1 673.0 117000 0.000891530461 0.523376482067 1.017014899996 0.600000000000
+chr1 14418000 14419000 Eya1 673.0 118000 0.000594353640 0.529451256365 0.687426738036 0.400000000000
+chr1 14419000 14420000 Eya1 673.0 119000 0.000594353640 0.533356831096 0.671114917005 0.400000000000
+chr1 14420000 14421000 Eya1 673.0 120000 0.000594353640 0.516584121708 0.662136790955 0.400000000000
+chr1 14421000 14422000 Eya1 673.0 121000 0.000297176820 0.535771528777 0.325623191563 0.200000000000
+chr1 14422000 14423000 Eya1 673.0 122000 0.000594353640 0.530490537983 0.668847636862 0.400000000000
+chr1 14423000 14424000 Eya1 673.0 123000 0.000594353640 0.530562527645 0.682685863943 0.400000000000
+chr1 14424000 14425000 Eya1 673.0 124000 0.000594353640 0.545553903451 0.725197437366 0.400000000000
+chr1 14425000 14426000 Eya1 673.0 125000 0.000594353640 0.564891705893 0.791915602137 0.400000000000
+chr1 14426000 14427000 Eya1 673.0 126000 0.001188707281 0.540351446443 1.477454480806 0.800000000000
+chr1 14427000 14428000 Eya1 673.0 127000 0.000594353640 0.544910167356 0.755644658251 0.400000000000
+chr1 14428000 14429000 Eya1 673.0 128000 0.000594353640 0.559785966334 0.791915602137 0.400000000000
+chr1 14429000 14430000 Eya1 673.0 129000 0.000594353640 0.550703059901 0.764397299148 0.400000000000
+chr1 14430000 14431000 Eya1 673.0 130000 0.000594353640 0.549227272107 0.714725272130 0.400000000000
+chr1 14431000 14432000 Eya1 673.0 131000 0.000000000000 0.561819843709 0.000000000000 0.000000000000
+chr1 14432000 14433000 Eya1 673.0 132000 0.000000000000 0.585853557394 0.000000000000 0.000000000000
+chr1 14433000 14434000 Eya1 673.0 133000 0.000297176820 0.595436468036 0.358657428234 0.200000000000
+chr1 14434000 14435000 Eya1 673.0 134000 0.000297176820 0.603093891321 0.373545095179 0.200000000000
+chr1 14435000 14436000 Eya1 673.0 135000 0.000297176820 0.604088556070 0.391262649240 0.200000000000
+chr1 14436000 14437000 Eya1 673.0 136000 0.000297176820 0.588739365234 0.358657428234 0.200000000000
+chr1 14437000 14438000 Eya1 673.0 137000 0.000297176820 0.567698248117 0.334423818431 0.200000000000
+chr1 14438000 14439000 Eya1 673.0 138000 0.000000000000 0.545110967143 0.000000000000 0.000000000000
+chr1 14439000 14440000 Eya1 673.0 139000 0.000000000000 0.585442994010 0.000000000000 0.000000000000
+chr1 14440000 14441000 Eya1 673.0 140000 0.000000000000 0.584686184662 0.000000000000 0.000000000000
+chr1 14441000 14442000 Eya1 673.0 141000 0.000000000000 0.604143773708 0.000000000000 0.000000000000
+chr1 14442000 14443000 Eya1 673.0 142000 0.000000000000 0.632888736121 0.000000000000 0.000000000000
+chr1 14443000 14444000 Eya1 673.0 143000 0.000000000000 0.631972051038 0.000000000000 0.000000000000
+chr1 14444000 14445000 Eya1 673.0 144000 0.000000000000 0.630242651353 0.000000000000 0.000000000000
+chr1 14445000 14446000 Eya1 673.0 145000 0.000000000000 0.654163481416 0.000000000000 0.000000000000
+chr1 14446000 14447000 Eya1 673.0 146000 0.000000000000 0.637809455886 0.000000000000 0.000000000000
+chr1 14447000 14448000 Eya1 673.0 147000 0.000594353640 0.621469775934 0.868328510517 0.400000000000
+chr1 14448000 14449000 Eya1 673.0 148000 0.000594353640 0.608829914540 0.899904092956 0.400000000000
+chr1 14449000 14450000 Eya1 673.0 149000 0.000891530461 0.611099504790 1.387702573545 0.600000000000
+chr1 14450000 14451000 Eya1 673.0 150000 0.001188707281 0.594707930687 1.721555655524 0.800000000000
+chr1 14451000 14452000 Eya1 673.0 151000 0.001188707281 0.605065312757 1.816320187745 0.800000000000
+chr1 14452000 14453000 Eya1 673.0 152000 0.000594353640 0.593714719997 0.879906224076 0.400000000000
+chr1 14453000 14454000 Eya1 673.0 153000 0.000594353640 0.596420485199 0.887797759777 0.400000000000
+chr1 14454000 14455000 Eya1 673.0 154000 0.000891530461 0.606160024614 1.356019866146 0.600000000000
+chr1 14455000 14456000 Eya1 673.0 155000 0.000594353640 0.609612095406 0.876012833675 0.400000000000
+chr1 14456000 14457000 Eya1 673.0 156000 0.000594353640 0.613314445827 0.876012833675 0.400000000000
+chr1 14457000 14458000 Eya1 673.0 157000 0.000594353640 0.602751520183 0.821489212945 0.400000000000
+chr1 14458000 14459000 Eya1 673.0 158000 0.001188707281 0.585293824856 1.583831204275 0.800000000000
+chr1 14459000 14460000 Eya1 673.0 159000 0.000594353640 0.573814787091 0.770345916308 0.400000000000
+chr1 14460000 14461000 Eya1 673.0 160000 0.001188707281 0.559100492248 1.517079697070 0.800000000000
+chr1 14461000 14462000 Eya1 673.0 161000 0.001188707281 0.533506885425 1.429450544260 0.800000000000
+chr1 14462000 14463000 Eya1 673.0 162000 0.001188707281 0.591476571829 1.616154290340 0.800000000000
+chr1 14463000 14464000 Eya1 673.0 163000 0.000594353640 0.593731273297 0.821489212945 0.400000000000
+chr1 14464000 14465000 Eya1 673.0 164000 0.000594353640 0.604924746422 0.857051516792 0.400000000000
+chr1 14465000 14466000 Eya1 673.0 165000 0.000000000000 0.620870359018 0.000000000000 0.000000000000
+chr1 14466000 14467000 Eya1 673.0 166000 0.000000000000 0.653063136379 0.000000000000 0.000000000000
+chr1 14467000 14468000 Eya1 673.0 167000 0.000000000000 0.616215444951 0.000000000000 0.000000000000
+chr1 14468000 14469000 Eya1 673.0 168000 0.000000000000 0.616137376589 0.000000000000 0.000000000000
+chr1 14469000 14470000 Eya1 673.0 169000 0.000000000000 0.600847921629 0.000000000000 0.000000000000
+chr1 14470000 14471000 Eya1 673.0 170000 0.000000000000 0.585658029501 0.000000000000 0.000000000000
+chr1 14471000 14472000 Eya1 673.0 171000 0.000000000000 0.601961893812 0.000000000000 0.000000000000
+chr1 14472000 14473000 Eya1 673.0 172000 0.000000000000 0.591031149544 0.000000000000 0.000000000000
+chr1 14473000 14474000 Eya1 673.0 173000 0.000000000000 0.574110012150 0.000000000000 0.000000000000
+chr1 14474000 14475000 Eya1 673.0 174000 0.000000000000 0.594064541193 0.000000000000 0.000000000000
+chr1 14475000 14476000 Eya1 673.0 175000 0.000000000000 0.586742846341 0.000000000000 0.000000000000
+chr1 14476000 14477000 Eya1 673.0 176000 0.000297176820 0.580281241496 0.421231702882 0.200000000000
+chr1 14477000 14478000 Eya1 673.0 177000 0.000297176820 0.600664600573 0.449952046478 0.200000000000
+chr1 14478000 14479000 Eya1 673.0 178000 0.000594353640 0.611923543314 0.933862738240 0.400000000000
+chr1 14479000 14480000 Eya1 673.0 179000 0.000594353640 0.616982108456 0.951821637197 0.400000000000
+chr1 14480000 14481000 Eya1 673.0 180000 0.001485884101 0.367009687936 2.512422592521 1.000000000000
+chr1 14481000 14482000 Eya1 673.0 181000 0.001188707281 0.637219432588 2.020192860178 0.800000000000
+chr1 14482000 14483000 Eya1 673.0 182000 0.001188707281 0.649572741436 2.128805380321 0.800000000000
+chr1 14483000 14484000 Eya1 673.0 183000 0.001783060921 0.359231506903 3.093420317586 1.200000000000
+chr1 14484000 14485000 Eya1 673.0 184000 0.002080237741 0.375416393977 3.380127570538 1.400000000000
+chr1 14485000 14486000 Eya1 673.0 185000 0.001188707281 0.617559413959 1.903643274393 0.800000000000
+chr1 14486000 14487000 Eya1 673.0 186000 0.001188707281 0.647906480781 2.106158514412 0.800000000000
+chr1 14487000 14488000 Eya1 673.0 187000 0.001188707281 0.651241359569 2.140312436513 0.800000000000
+chr1 14488000 14489000 Eya1 673.0 188000 0.000594353640 0.647869186187 1.058710697124 0.400000000000
+chr1 14489000 14490000 Eya1 673.0 189000 0.000297176820 0.671654971880 0.575520059550 0.200000000000
+chr1 14490000 14491000 Eya1 673.0 190000 0.000297176820 0.671941112135 0.578885673960 0.200000000000
+chr1 14491000 14492000 Eya1 673.0 191000 0.002080237741 0.341250160004 3.849589730333 1.400000000000
+chr1 14492000 14493000 Eya1 673.0 192000 0.003268945022 0.068166431915 5.982878858272 2.200000000000
+chr1 14493000 14494000 Eya1 673.0 193000 0.002971768202 0.059322876246 5.892229182196 2.000000000000
+chr1 14494000 14495000 Eya1 673.0 194000 0.003268945022 0.062511655285 6.294126893758 2.200000000000
+chr1 14495000 14496000 Eya1 673.0 195000 0.003268945022 0.056441264815 6.680269651133 2.200000000000
+chr1 14496000 14497000 Eya1 673.0 196000 0.002971768202 0.056496760292 6.072972410121 2.000000000000
+chr1 14497000 14498000 Eya1 673.0 197000 0.002080237741 0.335210836347 3.937080406684 1.400000000000
+chr1 14498000 14499000 Eya1 673.0 198000 0.002971768202 0.083110512066 4.852424033528 2.000000000000
+chr1 14499000 14500000 Eya1 673.0 199000 0.003343239227 0.073447408129 5.830530441735 2.250000000000
+chr1 14500000 14501000 Eya1 673.0 200000 0.004457652303 1.000000000000 7.575723225668 3.000000000000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,405 @@
+# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev
+# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw
+#
+chr1 18893000 18894000 Tfap2d 472.0 -200000 0.001412429379 0.880044890460 8.554173074049 0.666666666667
+chr1 18894000 18895000 Tfap2d 472.0 -199000 0.001059322034 0.852151439574 5.040852007510 0.500000000000
+chr1 18895000 18896000 Tfap2d 472.0 -198000 0.000847457627 0.820756603944 3.282415254892 0.400000000000
+chr1 18896000 18897000 Tfap2d 472.0 -197000 0.000847457627 0.814190727178 3.136530131373 0.400000000000
+chr1 18897000 18898000 Tfap2d 472.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000
+chr1 18898000 18899000 Tfap2d 472.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000
+chr1 18899000 18900000 Tfap2d 472.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000
+chr1 18900000 18901000 Tfap2d 472.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000
+chr1 18901000 18902000 Tfap2d 472.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000
+chr1 18902000 18903000 Tfap2d 472.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000
+chr1 18903000 18904000 Tfap2d 472.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000
+chr1 18904000 18905000 Tfap2d 472.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000
+chr1 18905000 18906000 Tfap2d 472.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000
+chr1 18906000 18907000 Tfap2d 472.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000
+chr1 18907000 18908000 Tfap2d 472.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000
+chr1 18908000 18909000 Tfap2d 472.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000
+chr1 18909000 18910000 Tfap2d 472.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000
+chr1 18910000 18911000 Tfap2d 472.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000
+chr1 18911000 18912000 Tfap2d 472.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000
+chr1 18912000 18913000 Tfap2d 472.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000
+chr1 18913000 18914000 Tfap2d 472.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000
+chr1 18914000 18915000 Tfap2d 472.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000
+chr1 18915000 18916000 Tfap2d 472.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000
+chr1 18916000 18917000 Tfap2d 472.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000
+chr1 18917000 18918000 Tfap2d 472.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000
+chr1 18918000 18919000 Tfap2d 472.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000
+chr1 18919000 18920000 Tfap2d 472.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000
+chr1 18920000 18921000 Tfap2d 472.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000
+chr1 18921000 18922000 Tfap2d 472.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000
+chr1 18922000 18923000 Tfap2d 472.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000
+chr1 18923000 18924000 Tfap2d 472.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000
+chr1 18924000 18925000 Tfap2d 472.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000
+chr1 18925000 18926000 Tfap2d 472.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000
+chr1 18926000 18927000 Tfap2d 472.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000
+chr1 18927000 18928000 Tfap2d 472.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000
+chr1 18928000 18929000 Tfap2d 472.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000
+chr1 18929000 18930000 Tfap2d 472.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000
+chr1 18930000 18931000 Tfap2d 472.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000
+chr1 18931000 18932000 Tfap2d 472.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000
+chr1 18932000 18933000 Tfap2d 472.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000
+chr1 18933000 18934000 Tfap2d 472.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000
+chr1 18934000 18935000 Tfap2d 472.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000
+chr1 18935000 18936000 Tfap2d 472.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000
+chr1 18936000 18937000 Tfap2d 472.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000
+chr1 18937000 18938000 Tfap2d 472.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000
+chr1 18938000 18939000 Tfap2d 472.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000
+chr1 18939000 18940000 Tfap2d 472.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000
+chr1 18940000 18941000 Tfap2d 472.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000
+chr1 18941000 18942000 Tfap2d 472.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000
+chr1 18942000 18943000 Tfap2d 472.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000
+chr1 18943000 18944000 Tfap2d 472.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000
+chr1 18944000 18945000 Tfap2d 472.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000
+chr1 18945000 18946000 Tfap2d 472.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000
+chr1 18946000 18947000 Tfap2d 472.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000
+chr1 18947000 18948000 Tfap2d 472.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000
+chr1 18948000 18949000 Tfap2d 472.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000
+chr1 18949000 18950000 Tfap2d 472.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000
+chr1 18950000 18951000 Tfap2d 472.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000
+chr1 18951000 18952000 Tfap2d 472.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000
+chr1 18952000 18953000 Tfap2d 472.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000
+chr1 18953000 18954000 Tfap2d 472.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000
+chr1 18954000 18955000 Tfap2d 472.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000
+chr1 18955000 18956000 Tfap2d 472.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000
+chr1 18956000 18957000 Tfap2d 472.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000
+chr1 18957000 18958000 Tfap2d 472.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000
+chr1 18958000 18959000 Tfap2d 472.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000
+chr1 18959000 18960000 Tfap2d 472.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000
+chr1 18960000 18961000 Tfap2d 472.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000
+chr1 18961000 18962000 Tfap2d 472.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000
+chr1 18962000 18963000 Tfap2d 472.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000
+chr1 18963000 18964000 Tfap2d 472.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000
+chr1 18964000 18965000 Tfap2d 472.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000
+chr1 18965000 18966000 Tfap2d 472.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000
+chr1 18966000 18967000 Tfap2d 472.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000
+chr1 18967000 18968000 Tfap2d 472.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000
+chr1 18968000 18969000 Tfap2d 472.0 -125000 0.000000000000 0.789042220648 0.000000000000 0.000000000000
+chr1 18969000 18970000 Tfap2d 472.0 -124000 0.000000000000 0.798137256530 0.000000000000 0.000000000000
+chr1 18970000 18971000 Tfap2d 472.0 -123000 0.000000000000 0.785510253584 0.000000000000 0.000000000000
+chr1 18971000 18972000 Tfap2d 472.0 -122000 0.000000000000 0.799644194656 0.000000000000 0.000000000000
+chr1 18972000 18973000 Tfap2d 472.0 -121000 0.000000000000 0.790961581141 0.000000000000 0.000000000000
+chr1 18973000 18974000 Tfap2d 472.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000
+chr1 18974000 18975000 Tfap2d 472.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000
+chr1 18975000 18976000 Tfap2d 472.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000
+chr1 18976000 18977000 Tfap2d 472.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000
+chr1 18977000 18978000 Tfap2d 472.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000
+chr1 18978000 18979000 Tfap2d 472.0 -115000 0.001271186441 0.757379810911 3.257165906583 0.600000000000
+chr1 18979000 18980000 Tfap2d 472.0 -114000 0.001271186441 0.773895809279 3.470750557945 0.600000000000
+chr1 18980000 18981000 Tfap2d 472.0 -113000 0.001271186441 0.780251801078 3.814698814531 0.600000000000
+chr1 18981000 18982000 Tfap2d 472.0 -112000 0.001271186441 0.809192563048 4.602517039860 0.600000000000
+chr1 18982000 18983000 Tfap2d 472.0 -111000 0.001271186441 0.805959066383 4.553027608970 0.600000000000
+chr1 18983000 18984000 Tfap2d 472.0 -110000 0.000000000000 0.826154588365 0.000000000000 0.000000000000
+chr1 18984000 18985000 Tfap2d 472.0 -109000 0.000000000000 0.796608508060 0.000000000000 0.000000000000
+chr1 18985000 18986000 Tfap2d 472.0 -108000 0.000000000000 0.785369993572 0.000000000000 0.000000000000
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+chr1 19175000 19176000 Tfap2d 472.0 82000 0.000423728814 0.468337454947 0.364712806099 0.200000000000
+chr1 19176000 19177000 Tfap2d 472.0 83000 0.000423728814 0.455460847598 0.319329990793 0.200000000000
+chr1 19177000 19178000 Tfap2d 472.0 84000 0.000423728814 0.431883914707 0.300306076526 0.200000000000
+chr1 19178000 19179000 Tfap2d 472.0 85000 0.000423728814 0.408620507080 0.299668484002 0.200000000000
+chr1 19179000 19180000 Tfap2d 472.0 86000 0.000423728814 0.421643738980 0.329006657256 0.200000000000
+chr1 19180000 19181000 Tfap2d 472.0 87000 0.000847457627 0.383191453565 0.627306026275 0.400000000000
+chr1 19181000 19182000 Tfap2d 472.0 88000 0.000847457627 0.391467791454 0.623151681699 0.400000000000
+chr1 19182000 19183000 Tfap2d 472.0 89000 0.000847457627 0.402358700756 0.688506614142 0.400000000000
+chr1 19183000 19184000 Tfap2d 472.0 90000 0.000847457627 0.422972373487 0.693581601507 0.400000000000
+chr1 19184000 19185000 Tfap2d 472.0 91000 0.000423728814 0.415388228662 0.332886452773 0.200000000000
+chr1 19185000 19186000 Tfap2d 472.0 92000 0.000000000000 0.457521466073 0.000000000000 0.000000000000
+chr1 19186000 19187000 Tfap2d 472.0 93000 0.000423728814 0.481878108523 0.387757845880 0.200000000000
+chr1 19187000 19188000 Tfap2d 472.0 94000 0.001271186441 0.485654072445 1.066578256419 0.600000000000
+chr1 19188000 19189000 Tfap2d 472.0 95000 0.001694915254 0.470520014646 1.363708752551 0.800000000000
+chr1 19189000 19190000 Tfap2d 472.0 96000 0.001694915254 0.451356425790 1.325294422259 0.800000000000
+chr1 19190000 19191000 Tfap2d 472.0 97000 0.001694915254 0.458000704387 1.373662831110 0.800000000000
+chr1 19191000 19192000 Tfap2d 472.0 98000 0.001271186441 0.454705613751 1.005775695846 0.600000000000
+chr1 19192000 19193000 Tfap2d 472.0 99000 0.001271186441 0.466062200428 1.080182571018 0.600000000000
+chr1 19193000 19194000 Tfap2d 472.0 100000 0.000847457627 0.485559847885 0.804238495376 0.400000000000
+chr1 19194000 19195000 Tfap2d 472.0 101000 0.000847457627 0.476647654186 0.860633267502 0.400000000000
+chr1 19195000 19196000 Tfap2d 472.0 102000 0.000847457627 0.458905220217 0.837648996932 0.400000000000
+chr1 19196000 19197000 Tfap2d 472.0 103000 0.000847457627 0.494251471435 0.925533481613 0.400000000000
+chr1 19197000 19198000 Tfap2d 472.0 104000 0.001694915254 0.496762683299 1.764298198693 0.800000000000
+chr1 19198000 19199000 Tfap2d 472.0 105000 0.002118644068 0.509055896344 2.112931975945 1.000000000000
+chr1 19199000 19200000 Tfap2d 472.0 106000 0.002118644068 0.494608472741 2.063506666181 1.000000000000
+chr1 19200000 19201000 Tfap2d 472.0 107000 0.002118644068 0.499149741114 1.982357527016 1.000000000000
+chr1 19201000 19202000 Tfap2d 472.0 108000 0.002542372881 0.503477555567 2.320172973657 1.200000000000
+chr1 19202000 19203000 Tfap2d 472.0 109000 0.001271186441 0.499669178563 1.202930590359 0.600000000000
+chr1 19203000 19204000 Tfap2d 472.0 110000 0.000847457627 0.503445250814 0.830257976313 0.400000000000
+chr1 19204000 19205000 Tfap2d 472.0 111000 0.001271186441 0.472832134979 1.179475119064 0.600000000000
+chr1 19205000 19206000 Tfap2d 472.0 112000 0.001694915254 0.479967223270 1.613072639333 0.800000000000
+chr1 19206000 19207000 Tfap2d 472.0 113000 0.001271186441 0.490923249210 1.241734803255 0.600000000000
+chr1 19207000 19208000 Tfap2d 472.0 114000 0.000847457627 0.453380733495 0.815860439041 0.400000000000
+chr1 19208000 19209000 Tfap2d 472.0 115000 0.000847457627 0.469666167625 0.822996244685 0.400000000000
+chr1 19209000 19210000 Tfap2d 472.0 116000 0.000423728814 0.505935664500 0.473637100575 0.200000000000
+chr1 19210000 19211000 Tfap2d 472.0 117000 0.000000000000 0.523376482067 0.000000000000 0.000000000000
+chr1 19211000 19212000 Tfap2d 472.0 118000 0.000000000000 0.529451256365 0.000000000000 0.000000000000
+chr1 19212000 19213000 Tfap2d 472.0 119000 0.000000000000 0.533356831096 0.000000000000 0.000000000000
+chr1 19213000 19214000 Tfap2d 472.0 120000 0.000000000000 0.516584121708 0.000000000000 0.000000000000
+chr1 19214000 19215000 Tfap2d 472.0 121000 0.000000000000 0.535771528777 0.000000000000 0.000000000000
+chr1 19215000 19216000 Tfap2d 472.0 122000 0.000847457627 0.530490537983 0.953674702560 0.400000000000
+chr1 19216000 19217000 Tfap2d 472.0 123000 0.000847457627 0.530562527645 0.973405903461 0.400000000000
+chr1 19217000 19218000 Tfap2d 472.0 124000 0.000847457627 0.545553903451 1.034020922346 0.400000000000
+chr1 19218000 19219000 Tfap2d 472.0 125000 0.000847457627 0.564891705893 1.129150847963 0.400000000000
+chr1 19219000 19220000 Tfap2d 472.0 126000 0.001271186441 0.540351446443 1.579968536413 0.600000000000
+chr1 19220000 19221000 Tfap2d 472.0 127000 0.000847457627 0.544910167356 1.077434014837 0.400000000000
+chr1 19221000 19222000 Tfap2d 472.0 128000 0.000847457627 0.559785966334 1.129150847963 0.400000000000
+chr1 19222000 19223000 Tfap2d 472.0 129000 0.000847457627 0.550703059901 1.089913945607 0.400000000000
+chr1 19223000 19224000 Tfap2d 472.0 130000 0.000847457627 0.549227272107 1.019089212169 0.400000000000
+chr1 19224000 19225000 Tfap2d 472.0 131000 0.000423728814 0.561819843709 0.553505317542 0.200000000000
+chr1 19225000 19226000 Tfap2d 472.0 132000 0.000423728814 0.585853557394 0.566842795180 0.200000000000
+chr1 19226000 19227000 Tfap2d 472.0 133000 0.000423728814 0.595436468036 0.511390782207 0.200000000000
+chr1 19227000 19228000 Tfap2d 472.0 134000 0.001271186441 0.603093891321 1.597854972809 0.600000000000
+chr1 19228000 19229000 Tfap2d 472.0 135000 0.001694915254 0.604088556070 2.231523414735 0.800000000000
+chr1 19229000 19230000 Tfap2d 472.0 136000 0.002118644068 0.411260634766 2.556953911034 1.000000000000
+chr1 19230000 19231000 Tfap2d 472.0 137000 0.002542372881 0.432301751883 2.861024107679 1.200000000000
+chr1 19231000 19232000 Tfap2d 472.0 138000 0.002542372881 0.454889032857 3.183695998364 1.200000000000
+chr1 19232000 19233000 Tfap2d 472.0 139000 0.001694915254 0.585442994010 1.987941631835 0.800000000000
+chr1 19233000 19234000 Tfap2d 472.0 140000 0.001271186441 0.584686184662 1.339973315587 0.600000000000
+chr1 19234000 19235000 Tfap2d 472.0 141000 0.000847457627 0.604143773708 0.963439290036 0.400000000000
+chr1 19235000 19236000 Tfap2d 472.0 142000 0.000423728814 0.632888736121 0.538717007419 0.200000000000
+chr1 19236000 19237000 Tfap2d 472.0 143000 0.001271186441 0.631972051038 1.539751155194 0.600000000000
+chr1 19237000 19238000 Tfap2d 472.0 144000 0.001271186441 0.630242651353 1.749717221137 0.600000000000
+chr1 19238000 19239000 Tfap2d 472.0 145000 0.001271186441 0.654163481416 2.117157840635 0.600000000000
+chr1 19239000 19240000 Tfap2d 472.0 146000 0.001694915254 0.637809455886 2.601730063600 0.800000000000
+chr1 19240000 19241000 Tfap2d 472.0 147000 0.001271186441 0.621469775934 1.857155998658 0.600000000000
+chr1 19241000 19242000 Tfap2d 472.0 148000 0.000423728814 0.608829914540 0.641562981525 0.200000000000
+chr1 19242000 19243000 Tfap2d 472.0 149000 0.000423728814 0.611099504790 0.659550728811 0.200000000000
+chr1 19243000 19244000 Tfap2d 472.0 150000 0.000847457627 0.594707930687 1.227337877296 0.400000000000
+chr1 19244000 19245000 Tfap2d 472.0 151000 0.001271186441 0.605065312757 1.942346641449 0.600000000000
+chr1 19245000 19246000 Tfap2d 472.0 152000 0.001271186441 0.593714719997 1.881918078824 0.600000000000
+chr1 19246000 19247000 Tfap2d 472.0 153000 0.002118644068 0.403579514801 3.164660446662 1.000000000000
+chr1 19247000 19248000 Tfap2d 472.0 154000 0.002118644068 0.393839975386 3.222462464392 1.000000000000
+chr1 19248000 19249000 Tfap2d 472.0 155000 0.001694915254 0.609612095406 2.498121343489 0.800000000000
+chr1 19249000 19250000 Tfap2d 472.0 156000 0.000847457627 0.613314445827 1.249060671745 0.400000000000
+chr1 19250000 19251000 Tfap2d 472.0 157000 0.000847457627 0.602751520183 1.171318305746 0.400000000000
+chr1 19251000 19252000 Tfap2d 472.0 158000 0.000000000000 0.585293824856 0.000000000000 0.000000000000
+chr1 19252000 19253000 Tfap2d 472.0 159000 0.000847457627 0.573814787091 1.098395766262 0.400000000000
+chr1 19253000 19254000 Tfap2d 472.0 160000 0.000847457627 0.559100492248 1.081562114542 0.400000000000
+chr1 19254000 19255000 Tfap2d 472.0 161000 0.001694915254 0.533506885425 2.038178424337 0.800000000000
+chr1 19255000 19256000 Tfap2d 472.0 162000 0.001694915254 0.591476571829 2.304389486014 0.800000000000
+chr1 19256000 19257000 Tfap2d 472.0 163000 0.002542372881 0.406268726703 3.513954917238 1.200000000000
+chr1 19257000 19258000 Tfap2d 472.0 164000 0.002118644068 0.395075253578 3.055061815685 1.000000000000
+chr1 19258000 19259000 Tfap2d 472.0 165000 0.002118644068 0.379129640982 3.252162579500 1.000000000000
+chr1 19259000 19260000 Tfap2d 472.0 166000 0.001694915254 0.653063136379 2.822877120847 0.800000000000
+chr1 19260000 19261000 Tfap2d 472.0 167000 0.001694915254 0.616215444951 2.701317818024 0.800000000000
+chr1 19261000 19262000 Tfap2d 472.0 168000 0.000847457627 0.616137376589 1.312966101957 0.400000000000
+chr1 19262000 19263000 Tfap2d 472.0 169000 0.000423728814 0.600847921629 0.593041411154 0.200000000000
+chr1 19263000 19264000 Tfap2d 472.0 170000 0.000423728814 0.585658029501 0.573755512251 0.200000000000
+chr1 19264000 19265000 Tfap2d 472.0 171000 0.000000000000 0.601961893812 0.000000000000 0.000000000000
+chr1 19265000 19266000 Tfap2d 472.0 172000 0.000000000000 0.591031149544 0.000000000000 0.000000000000
+chr1 19266000 19267000 Tfap2d 472.0 173000 0.000000000000 0.574110012150 0.000000000000 0.000000000000
+chr1 19267000 19268000 Tfap2d 472.0 174000 0.000000000000 0.594064541193 0.000000000000 0.000000000000
+chr1 19268000 19269000 Tfap2d 472.0 175000 0.000423728814 0.586742846341 0.608378689139 0.200000000000
+chr1 19269000 19270000 Tfap2d 472.0 176000 0.000423728814 0.580281241496 0.600612152627 0.200000000000
+chr1 19270000 19271000 Tfap2d 472.0 177000 0.000423728814 0.600664600573 0.641562981525 0.200000000000
+chr1 19271000 19272000 Tfap2d 472.0 178000 0.000423728814 0.611923543314 0.665772905546 0.200000000000
+chr1 19272000 19273000 Tfap2d 472.0 179000 0.000423728814 0.616982108456 0.678576230756 0.200000000000
+chr1 19273000 19274000 Tfap2d 472.0 180000 0.000000000000 0.632990312064 0.000000000000 0.000000000000
+chr1 19274000 19275000 Tfap2d 472.0 181000 0.000000000000 0.637219432588 0.000000000000 0.000000000000
+chr1 19275000 19276000 Tfap2d 472.0 182000 0.000423728814 0.649572741436 0.758837934828 0.200000000000
+chr1 19276000 19277000 Tfap2d 472.0 183000 0.000423728814 0.640768493097 0.735124249200 0.200000000000
+chr1 19277000 19278000 Tfap2d 472.0 184000 0.000423728814 0.624583606023 0.688506614701 0.200000000000
+chr1 19278000 19279000 Tfap2d 472.0 185000 0.000423728814 0.617559413959 0.678576230756 0.200000000000
+chr1 19279000 19280000 Tfap2d 472.0 186000 0.000423728814 0.647906480781 0.750765190784 0.200000000000
+chr1 19280000 19281000 Tfap2d 472.0 187000 0.000000000000 0.651241359569 0.000000000000 0.000000000000
+chr1 19281000 19282000 Tfap2d 472.0 188000 0.000000000000 0.647869186187 0.000000000000 0.000000000000
+chr1 19282000 19283000 Tfap2d 472.0 189000 0.000000000000 0.671654971880 0.000000000000 0.000000000000
+chr1 19283000 19284000 Tfap2d 472.0 190000 0.000000000000 0.671941112135 0.000000000000 0.000000000000
+chr1 19284000 19285000 Tfap2d 472.0 191000 0.000000000000 0.658749839996 0.000000000000 0.000000000000
+chr1 19285000 19286000 Tfap2d 472.0 192000 0.000000000000 0.655383997647 0.000000000000 0.000000000000
+chr1 19286000 19287000 Tfap2d 472.0 193000 0.000000000000 0.676994533785 0.000000000000 0.000000000000
+chr1 19287000 19288000 Tfap2d 472.0 194000 0.000000000000 0.669325066593 0.000000000000 0.000000000000
+chr1 19288000 19289000 Tfap2d 472.0 195000 0.000000000000 0.685162890895 0.000000000000 0.000000000000
+chr1 19289000 19290000 Tfap2d 472.0 196000 0.000000000000 0.685254654751 0.000000000000 0.000000000000
+chr1 19290000 19291000 Tfap2d 472.0 197000 0.000000000000 0.664789163653 0.000000000000 0.000000000000
+chr1 19291000 19292000 Tfap2d 472.0 198000 0.000000000000 0.623323575813 0.000000000000 0.000000000000
+chr1 19292000 19293000 Tfap2d 472.0 199000 0.000000000000 0.643728679260 0.000000000000 0.000000000000
+chr1 19293000 19294000 Tfap2d 472.0 200000 0.000000000000 0.637624930855 0.000000000000 0.000000000000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,405 @@
+# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev
+# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw
+#
+chr1 4287000 4288000 Sox17 810.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000
+chr1 4288000 4289000 Sox17 810.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000
+chr1 4289000 4290000 Sox17 810.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000
+chr1 4290000 4291000 Sox17 810.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000
+chr1 4291000 4292000 Sox17 810.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000
+chr1 4292000 4293000 Sox17 810.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000
+chr1 4293000 4294000 Sox17 810.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000
+chr1 4294000 4295000 Sox17 810.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000
+chr1 4295000 4296000 Sox17 810.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000
+chr1 4296000 4297000 Sox17 810.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000
+chr1 4297000 4298000 Sox17 810.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000
+chr1 4298000 4299000 Sox17 810.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000
+chr1 4299000 4300000 Sox17 810.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000
+chr1 4300000 4301000 Sox17 810.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000
+chr1 4301000 4302000 Sox17 810.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000
+chr1 4302000 4303000 Sox17 810.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000
+chr1 4303000 4304000 Sox17 810.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000
+chr1 4304000 4305000 Sox17 810.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000
+chr1 4305000 4306000 Sox17 810.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000
+chr1 4306000 4307000 Sox17 810.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000
+chr1 4307000 4308000 Sox17 810.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000
+chr1 4308000 4309000 Sox17 810.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000
+chr1 4309000 4310000 Sox17 810.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000
+chr1 4310000 4311000 Sox17 810.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000
+chr1 4311000 4312000 Sox17 810.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000
+chr1 4312000 4313000 Sox17 810.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000
+chr1 4313000 4314000 Sox17 810.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000
+chr1 4314000 4315000 Sox17 810.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000
+chr1 4315000 4316000 Sox17 810.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000
+chr1 4316000 4317000 Sox17 810.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000
+chr1 4317000 4318000 Sox17 810.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000
+chr1 4318000 4319000 Sox17 810.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000
+chr1 4319000 4320000 Sox17 810.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000
+chr1 4320000 4321000 Sox17 810.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000
+chr1 4321000 4322000 Sox17 810.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000
+chr1 4322000 4323000 Sox17 810.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000
+chr1 4323000 4324000 Sox17 810.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000
+chr1 4324000 4325000 Sox17 810.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000
+chr1 4325000 4326000 Sox17 810.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000
+chr1 4326000 4327000 Sox17 810.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000
+chr1 4327000 4328000 Sox17 810.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000
+chr1 4328000 4329000 Sox17 810.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000
+chr1 4329000 4330000 Sox17 810.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000
+chr1 4330000 4331000 Sox17 810.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000
+chr1 4331000 4332000 Sox17 810.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000
+chr1 4332000 4333000 Sox17 810.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000
+chr1 4333000 4334000 Sox17 810.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000
+chr1 4334000 4335000 Sox17 810.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000
+chr1 4335000 4336000 Sox17 810.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000
+chr1 4336000 4337000 Sox17 810.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000
+chr1 4337000 4338000 Sox17 810.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000
+chr1 4338000 4339000 Sox17 810.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000
+chr1 4339000 4340000 Sox17 810.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000
+chr1 4340000 4341000 Sox17 810.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000
+chr1 4341000 4342000 Sox17 810.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000
+chr1 4342000 4343000 Sox17 810.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000
+chr1 4343000 4344000 Sox17 810.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000
+chr1 4344000 4345000 Sox17 810.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000
+chr1 4345000 4346000 Sox17 810.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000
+chr1 4346000 4347000 Sox17 810.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000
+chr1 4347000 4348000 Sox17 810.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000
+chr1 4348000 4349000 Sox17 810.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000
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+chr1 4552000 4553000 Sox17 810.0 65000 0.000000000000 0.397682630681 0.000000000000 0.000000000000
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+chr1 4555000 4556000 Sox17 810.0 68000 0.000000000000 0.452734978904 0.000000000000 0.000000000000
+chr1 4556000 4557000 Sox17 810.0 69000 0.000000000000 0.465980642540 0.000000000000 0.000000000000
+chr1 4557000 4558000 Sox17 810.0 70000 0.000740740741 0.444796187147 0.597434310652 0.600000000000
+chr1 4558000 4559000 Sox17 810.0 71000 0.000987654321 0.428059180779 0.770461734373 0.800000000000
+chr1 4559000 4560000 Sox17 810.0 72000 0.001234567901 0.587785370169 0.983813278620 1.000000000000
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+chr1 4562000 4563000 Sox17 810.0 75000 0.002962962963 0.263488665584 2.289933832159 2.400000000000
+chr1 4563000 4564000 Sox17 810.0 76000 0.002716049383 0.265067547919 2.084596063304 2.200000000000
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+chr1 4572000 4573000 Sox17 810.0 85000 0.000740740741 0.408620507080 0.523864905367 0.600000000000
+chr1 4573000 4574000 Sox17 810.0 86000 0.000740740741 0.421643738980 0.575152378611 0.600000000000
+chr1 4574000 4575000 Sox17 810.0 87000 0.000740740741 0.383191453565 0.548311934077 0.600000000000
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+chr1 4585000 4586000 Sox17 810.0 98000 0.002222222222 0.545294386249 1.758244920146 1.800000000000
+chr1 4586000 4587000 Sox17 810.0 99000 0.002222222222 0.533937799572 1.888319161188 1.800000000000
+chr1 4587000 4588000 Sox17 810.0 100000 0.001975308642 0.514440152115 1.874570715149 1.600000000000
+chr1 4588000 4589000 Sox17 810.0 101000 0.001728395062 0.523352345814 1.755266861622 1.400000000000
+chr1 4589000 4590000 Sox17 810.0 102000 0.001728395062 0.541094779783 1.708390299916 1.400000000000
+chr1 4590000 4591000 Sox17 810.0 103000 0.000000000000 0.494251471435 0.000000000000 0.000000000000
+chr1 4591000 4592000 Sox17 810.0 104000 0.000000000000 0.496762683299 0.000000000000 0.000000000000
+chr1 4592000 4593000 Sox17 810.0 105000 0.000493827160 0.490944103656 0.492495749455 0.400000000000
+chr1 4593000 4594000 Sox17 810.0 106000 0.000493827160 0.505391527259 0.480975380957 0.400000000000
+chr1 4594000 4595000 Sox17 810.0 107000 0.000740740741 0.500850258886 0.693090927964 0.600000000000
+chr1 4595000 4596000 Sox17 810.0 108000 0.000740740741 0.496522444433 0.676001014547 0.600000000000
+chr1 4596000 4597000 Sox17 810.0 109000 0.000987654321 0.499669178563 0.934622615061 0.800000000000
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+chr1 4598000 4599000 Sox17 810.0 111000 0.000493827160 0.472832134979 0.458199387818 0.400000000000
+chr1 4599000 4600000 Sox17 810.0 112000 0.000740740741 0.479967223270 0.704972486820 0.600000000000
+chr1 4600000 4601000 Sox17 810.0 113000 0.000987654321 0.490923249210 0.964771731912 0.800000000000
+chr1 4601000 4602000 Sox17 810.0 114000 0.001234567901 0.546619266505 1.188537429714 1.000000000000
+chr1 4602000 4603000 Sox17 810.0 115000 0.001234567901 0.530333832375 1.198932800900 1.000000000000
+chr1 4603000 4604000 Sox17 810.0 116000 0.001728395062 0.494064335500 1.931971580617 1.400000000000
+chr1 4604000 4605000 Sox17 810.0 117000 0.001234567901 0.476623517933 1.408335447937 1.000000000000
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+chr1 4609000 4610000 Sox17 810.0 122000 0.000493827160 0.530490537983 0.555721555072 0.400000000000
+chr1 4610000 4611000 Sox17 810.0 123000 0.000987654321 0.530562527645 1.134438485021 0.800000000000
+chr1 4611000 4612000 Sox17 810.0 124000 0.000493827160 0.545553903451 0.602540586849 0.400000000000
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+chr1 4672000 4673000 Sox17 810.0 185000 0.000246913580 0.617559413959 0.395417260391 0.200000000000
+chr1 4673000 4674000 Sox17 810.0 186000 0.000246913580 0.647906480781 0.437482925987 0.200000000000
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+chr1 4678000 4679000 Sox17 810.0 191000 0.000740740741 0.658749839996 1.370779835192 0.600000000000
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+chr1 4680000 4681000 Sox17 810.0 193000 0.000740740741 0.676994533785 1.468692681340 0.600000000000
+chr1 4681000 4682000 Sox17 810.0 194000 0.000740740741 0.669325066593 1.426244915656 0.600000000000
+chr1 4682000 4683000 Sox17 810.0 195000 0.000740740741 0.685162890895 1.513744604449 0.600000000000
+chr1 4683000 4684000 Sox17 810.0 196000 0.000493827160 0.685254654751 1.009163069632 0.400000000000
+chr1 4684000 4685000 Sox17 810.0 197000 0.000493827160 0.664789163653 0.934622615061 0.400000000000
+chr1 4685000 4686000 Sox17 810.0 198000 0.000246913580 0.623323575813 0.403170540070 0.200000000000
+chr1 4686000 4687000 Sox17 810.0 199000 0.000308641975 0.643728679260 0.538264332961 0.250000000000
+chr1 4687000 4688000 Sox17 810.0 200000 0.000411522634 0.637624930855 0.699377466512 0.333333333333
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,405 @@
+# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev
+# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw
+#
+chr1 14100000 14101000 Eya1 832.0 -200000 0.000400641026 0.880044890460 2.426424093120 0.333333333333
+chr1 14101000 14102000 Eya1 832.0 -199000 0.000300480769 0.852151439574 1.429857059822 0.250000000000
+chr1 14102000 14103000 Eya1 832.0 -198000 0.000240384615 0.820756603944 0.931069711724 0.200000000000
+chr1 14103000 14104000 Eya1 832.0 -197000 0.000240384615 0.814190727178 0.889688835341 0.200000000000
+chr1 14104000 14105000 Eya1 832.0 -196000 0.000240384615 0.827190062074 0.976487746811 0.200000000000
+chr1 14105000 14106000 Eya1 832.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000
+chr1 14106000 14107000 Eya1 832.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000
+chr1 14107000 14108000 Eya1 832.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000
+chr1 14108000 14109000 Eya1 832.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000
+chr1 14109000 14110000 Eya1 832.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000
+chr1 14110000 14111000 Eya1 832.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000
+chr1 14111000 14112000 Eya1 832.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000
+chr1 14112000 14113000 Eya1 832.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000
+chr1 14113000 14114000 Eya1 832.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000
+chr1 14114000 14115000 Eya1 832.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000
+chr1 14115000 14116000 Eya1 832.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000
+chr1 14116000 14117000 Eya1 832.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000
+chr1 14117000 14118000 Eya1 832.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000
+chr1 14118000 14119000 Eya1 832.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000
+chr1 14119000 14120000 Eya1 832.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000
+chr1 14120000 14121000 Eya1 832.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000
+chr1 14121000 14122000 Eya1 832.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000
+chr1 14122000 14123000 Eya1 832.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000
+chr1 14123000 14124000 Eya1 832.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000
+chr1 14124000 14125000 Eya1 832.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000
+chr1 14125000 14126000 Eya1 832.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000
+chr1 14126000 14127000 Eya1 832.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000
+chr1 14127000 14128000 Eya1 832.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000
+chr1 14128000 14129000 Eya1 832.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000
+chr1 14129000 14130000 Eya1 832.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000
+chr1 14130000 14131000 Eya1 832.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000
+chr1 14131000 14132000 Eya1 832.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000
+chr1 14132000 14133000 Eya1 832.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000
+chr1 14133000 14134000 Eya1 832.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000
+chr1 14134000 14135000 Eya1 832.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000
+chr1 14135000 14136000 Eya1 832.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000
+chr1 14136000 14137000 Eya1 832.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000
+chr1 14137000 14138000 Eya1 832.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000
+chr1 14138000 14139000 Eya1 832.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000
+chr1 14139000 14140000 Eya1 832.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000
+chr1 14140000 14141000 Eya1 832.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000
+chr1 14141000 14142000 Eya1 832.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000
+chr1 14142000 14143000 Eya1 832.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000
+chr1 14143000 14144000 Eya1 832.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000
+chr1 14144000 14145000 Eya1 832.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000
+chr1 14145000 14146000 Eya1 832.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000
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+chr1 14341000 14342000 Eya1 832.0 41000 0.001923076923 0.735204850266 0.940640178273 1.600000000000
+chr1 14342000 14343000 Eya1 832.0 42000 0.001682692308 0.715518206151 0.812324589051 1.400000000000
+chr1 14343000 14344000 Eya1 832.0 43000 0.001682692308 0.742792784838 0.847963640473 1.400000000000
+chr1 14344000 14345000 Eya1 832.0 44000 0.000721153846 0.272635556182 0.391231246887 0.600000000000
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+chr1 14348000 14349000 Eya1 832.0 48000 0.000240384615 0.404372467862 0.154281300972 0.200000000000
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+chr1 14352000 14353000 Eya1 832.0 52000 0.001442307692 0.612204475076 0.884773427375 1.200000000000
+chr1 14353000 14354000 Eya1 832.0 53000 0.001201923077 0.618352766870 0.771406504862 1.000000000000
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+chr1 14368000 14369000 Eya1 832.0 68000 0.001201923077 0.547265021096 0.998403930008 1.000000000000
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+chr1 14382000 14383000 Eya1 832.0 82000 0.001442307692 0.531662545053 1.241426282299 1.200000000000
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+chr1 14494000 14495000 Eya1 832.0 194000 0.001682692308 0.330674933407 3.239907320421 1.400000000000
+chr1 14495000 14496000 Eya1 832.0 195000 0.002163461538 0.314837109105 4.421153111551 1.800000000000
+chr1 14496000 14497000 Eya1 832.0 196000 0.001682692308 0.314745345249 3.438674642317 1.400000000000
+chr1 14497000 14498000 Eya1 832.0 197000 0.001442307692 0.335210836347 2.729727108893 1.200000000000
+chr1 14498000 14499000 Eya1 832.0 198000 0.002644230769 0.083110512066 4.317607586564 2.200000000000
+chr1 14499000 14500000 Eya1 832.0 199000 0.003305288462 0.073447408129 5.764345200343 2.750000000000
+chr1 14500000 14501000 Eya1 832.0 200000 0.003605769231 1.000000000000 6.127958811148 3.000000000000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,405 @@
+# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev
+# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw
+#
+chr1 18893000 18894000 Tfap2d 800.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000
+chr1 18894000 18895000 Tfap2d 800.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000
+chr1 18895000 18896000 Tfap2d 800.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000
+chr1 18896000 18897000 Tfap2d 800.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000
+chr1 18897000 18898000 Tfap2d 800.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000
+chr1 18898000 18899000 Tfap2d 800.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000
+chr1 18899000 18900000 Tfap2d 800.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000
+chr1 18900000 18901000 Tfap2d 800.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000
+chr1 18901000 18902000 Tfap2d 800.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000
+chr1 18902000 18903000 Tfap2d 800.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000
+chr1 18903000 18904000 Tfap2d 800.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000
+chr1 18904000 18905000 Tfap2d 800.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000
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+chr1 19285000 19286000 Tfap2d 800.0 192000 0.000250000000 0.655383997647 0.457554258138 0.200000000000
+chr1 19286000 19287000 Tfap2d 800.0 193000 0.000500000000 0.676994533785 0.991367559904 0.400000000000
+chr1 19287000 19288000 Tfap2d 800.0 194000 0.000500000000 0.669325066593 0.962715318068 0.400000000000
+chr1 19288000 19289000 Tfap2d 800.0 195000 0.000250000000 0.685162890895 0.510888804001 0.200000000000
+chr1 19289000 19290000 Tfap2d 800.0 196000 0.000250000000 0.685254654751 0.510888804001 0.200000000000
+chr1 19290000 19291000 Tfap2d 800.0 197000 0.000250000000 0.664789163653 0.473152698875 0.200000000000
+chr1 19291000 19292000 Tfap2d 800.0 198000 0.000000000000 0.623323575813 0.000000000000 0.000000000000
+chr1 19292000 19293000 Tfap2d 800.0 199000 0.000000000000 0.643728679260 0.000000000000 0.000000000000
+chr1 19293000 19294000 Tfap2d 800.0 200000 0.000000000000 0.637624930855 0.000000000000 0.000000000000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,405 @@
+# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev
+# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw
+#
+chr1 4287000 4288000 Sox17 978.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000
+chr1 4288000 4289000 Sox17 978.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000
+chr1 4289000 4290000 Sox17 978.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000
+chr1 4290000 4291000 Sox17 978.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000
+chr1 4291000 4292000 Sox17 978.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000
+chr1 4292000 4293000 Sox17 978.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000
+chr1 4293000 4294000 Sox17 978.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000
+chr1 4294000 4295000 Sox17 978.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000
+chr1 4295000 4296000 Sox17 978.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000
+chr1 4296000 4297000 Sox17 978.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000
+chr1 4297000 4298000 Sox17 978.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000
+chr1 4298000 4299000 Sox17 978.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000
+chr1 4299000 4300000 Sox17 978.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000
+chr1 4300000 4301000 Sox17 978.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000
+chr1 4301000 4302000 Sox17 978.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000
+chr1 4302000 4303000 Sox17 978.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000
+chr1 4303000 4304000 Sox17 978.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000
+chr1 4304000 4305000 Sox17 978.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000
+chr1 4305000 4306000 Sox17 978.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000
+chr1 4306000 4307000 Sox17 978.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000
+chr1 4307000 4308000 Sox17 978.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000
+chr1 4308000 4309000 Sox17 978.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000
+chr1 4309000 4310000 Sox17 978.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000
+chr1 4310000 4311000 Sox17 978.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000
+chr1 4311000 4312000 Sox17 978.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000
+chr1 4312000 4313000 Sox17 978.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000
+chr1 4313000 4314000 Sox17 978.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000
+chr1 4314000 4315000 Sox17 978.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000
+chr1 4315000 4316000 Sox17 978.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000
+chr1 4316000 4317000 Sox17 978.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000
+chr1 4317000 4318000 Sox17 978.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000
+chr1 4318000 4319000 Sox17 978.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000
+chr1 4319000 4320000 Sox17 978.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000
+chr1 4320000 4321000 Sox17 978.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000
+chr1 4321000 4322000 Sox17 978.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000
+chr1 4322000 4323000 Sox17 978.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000
+chr1 4323000 4324000 Sox17 978.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000
+chr1 4324000 4325000 Sox17 978.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000
+chr1 4325000 4326000 Sox17 978.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000
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+chr1 4329000 4330000 Sox17 978.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000
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+chr1 4335000 4336000 Sox17 978.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000
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+chr1 4342000 4343000 Sox17 978.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000
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+chr1 4345000 4346000 Sox17 978.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000
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+chr1 4348000 4349000 Sox17 978.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000
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+chr1 4352000 4353000 Sox17 978.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000
+chr1 4353000 4354000 Sox17 978.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000
+chr1 4354000 4355000 Sox17 978.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000
+chr1 4355000 4356000 Sox17 978.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000
+chr1 4356000 4357000 Sox17 978.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000
+chr1 4357000 4358000 Sox17 978.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000
+chr1 4358000 4359000 Sox17 978.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000
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+chr1 4360000 4361000 Sox17 978.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000
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+chr1 4362000 4363000 Sox17 978.0 -125000 0.000000000000 0.789042220648 0.000000000000 0.000000000000
+chr1 4363000 4364000 Sox17 978.0 -124000 0.000000000000 0.798137256530 0.000000000000 0.000000000000
+chr1 4364000 4365000 Sox17 978.0 -123000 0.000000000000 0.785510253584 0.000000000000 0.000000000000
+chr1 4365000 4366000 Sox17 978.0 -122000 0.000000000000 0.799644194656 0.000000000000 0.000000000000
+chr1 4366000 4367000 Sox17 978.0 -121000 0.000000000000 0.790961581141 0.000000000000 0.000000000000
+chr1 4367000 4368000 Sox17 978.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000
+chr1 4368000 4369000 Sox17 978.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000
+chr1 4369000 4370000 Sox17 978.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000
+chr1 4370000 4371000 Sox17 978.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000
+chr1 4371000 4372000 Sox17 978.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000
+chr1 4372000 4373000 Sox17 978.0 -115000 0.000000000000 0.757379810911 0.000000000000 0.000000000000
+chr1 4373000 4374000 Sox17 978.0 -114000 0.000000000000 0.773895809279 0.000000000000 0.000000000000
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+chr1 4376000 4377000 Sox17 978.0 -111000 0.000000000000 0.805959066383 0.000000000000 0.000000000000
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+chr1 4378000 4379000 Sox17 978.0 -109000 0.000000000000 0.796608508060 0.000000000000 0.000000000000
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+chr1 4383000 4384000 Sox17 978.0 -104000 0.000000000000 0.830453698245 0.000000000000 0.000000000000
+chr1 4384000 4385000 Sox17 978.0 -103000 0.000000000000 0.843960603767 0.000000000000 0.000000000000
+chr1 4385000 4386000 Sox17 978.0 -102000 0.000000000000 1.000000000000 0.000000000000 0.000000000000
+chr1 4386000 4387000 Sox17 978.0 -101000 0.000000000000 0.853858772997 0.000000000000 0.000000000000
+chr1 4387000 4388000 Sox17 978.0 -100000 0.000000000000 0.828442819541 0.000000000000 0.000000000000
+chr1 4388000 4389000 Sox17 978.0 -99000 0.000000000000 0.815159530773 0.000000000000 0.000000000000
+chr1 4389000 4390000 Sox17 978.0 -98000 0.000000000000 0.803890742201 0.000000000000 0.000000000000
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+chr1 4398000 4399000 Sox17 978.0 -89000 0.000000000000 0.754315244689 0.000000000000 0.000000000000
+chr1 4399000 4400000 Sox17 978.0 -88000 0.000000000000 0.748521601906 0.000000000000 0.000000000000
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+chr1 4673000 4674000 Sox17 978.0 186000 0.000817995910 0.647906480781 1.449329938854 0.800000000000
+chr1 4674000 4675000 Sox17 978.0 187000 0.001226993865 0.348758640431 2.209248880021 1.200000000000
+chr1 4675000 4676000 Sox17 978.0 188000 0.001022494888 0.352130813813 1.821350457987 1.000000000000
+chr1 4676000 4677000 Sox17 978.0 189000 0.000817995910 0.671654971880 1.584151329559 0.800000000000
+chr1 4677000 4678000 Sox17 978.0 190000 0.001022494888 0.328058887865 1.991769215618 1.000000000000
+chr1 4678000 4679000 Sox17 978.0 191000 0.001226993865 0.341250160004 2.270616904920 1.200000000000
+chr1 4679000 4680000 Sox17 978.0 192000 0.000817995910 0.655383997647 1.497110047078 0.800000000000
+chr1 4680000 4681000 Sox17 978.0 193000 0.001022494888 0.323005466215 2.027336523322 1.000000000000
+chr1 4681000 4682000 Sox17 978.0 194000 0.000817995910 0.669325066593 1.574994385387 0.800000000000
+chr1 4682000 4683000 Sox17 978.0 195000 0.000613496933 0.685162890895 1.253714856445 0.600000000000
+chr1 4683000 4684000 Sox17 978.0 196000 0.000204498978 0.685254654751 0.417904952148 0.200000000000
+chr1 4684000 4685000 Sox17 978.0 197000 0.001022494888 0.335210836347 1.935184862473 1.000000000000
+chr1 4685000 4686000 Sox17 978.0 198000 0.000817995910 0.623323575813 1.335657003912 0.800000000000
+chr1 4686000 4687000 Sox17 978.0 199000 0.001022494888 0.356271320740 1.783206992633 1.000000000000
+chr1 4687000 4688000 Sox17 978.0 200000 0.001363326517 0.362375069145 2.316956024029 1.333333333333
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,405 @@
+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3
+# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw
+#
+chr1 14100000 14101000 Eya1 673.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000
+chr1 14101000 14102000 Eya1 673.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000
+chr1 14102000 14103000 Eya1 673.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000
+chr1 14103000 14104000 Eya1 673.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000
+chr1 14104000 14105000 Eya1 673.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000
+chr1 14105000 14106000 Eya1 673.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000
+chr1 14106000 14107000 Eya1 673.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000
+chr1 14107000 14108000 Eya1 673.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000
+chr1 14108000 14109000 Eya1 673.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000
+chr1 14109000 14110000 Eya1 673.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000
+chr1 14110000 14111000 Eya1 673.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000
+chr1 14111000 14112000 Eya1 673.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000
+chr1 14112000 14113000 Eya1 673.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000
+chr1 14113000 14114000 Eya1 673.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000
+chr1 14114000 14115000 Eya1 673.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000
+chr1 14115000 14116000 Eya1 673.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000
+chr1 14116000 14117000 Eya1 673.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000
+chr1 14117000 14118000 Eya1 673.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000
+chr1 14118000 14119000 Eya1 673.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000
+chr1 14119000 14120000 Eya1 673.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000
+chr1 14120000 14121000 Eya1 673.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000
+chr1 14121000 14122000 Eya1 673.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000
+chr1 14122000 14123000 Eya1 673.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000
+chr1 14123000 14124000 Eya1 673.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000
+chr1 14124000 14125000 Eya1 673.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000
+chr1 14125000 14126000 Eya1 673.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000
+chr1 14126000 14127000 Eya1 673.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000
+chr1 14127000 14128000 Eya1 673.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000
+chr1 14128000 14129000 Eya1 673.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000
+chr1 14129000 14130000 Eya1 673.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000
+chr1 14130000 14131000 Eya1 673.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000
+chr1 14131000 14132000 Eya1 673.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000
+chr1 14132000 14133000 Eya1 673.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000
+chr1 14133000 14134000 Eya1 673.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000
+chr1 14134000 14135000 Eya1 673.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000
+chr1 14135000 14136000 Eya1 673.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000
+chr1 14136000 14137000 Eya1 673.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000
+chr1 14137000 14138000 Eya1 673.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000
+chr1 14138000 14139000 Eya1 673.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000
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+chr1 14140000 14141000 Eya1 673.0 -160000 0.000891530461 0.849999946243 4.242405017910 0.600000000000
+chr1 14141000 14142000 Eya1 673.0 -159000 0.000891530461 0.869107683649 4.789812097144 0.600000000000
+chr1 14142000 14143000 Eya1 673.0 -158000 0.000891530461 0.851329217290 4.303889149198 0.600000000000
+chr1 14143000 14144000 Eya1 673.0 -157000 0.000891530461 0.855727455775 4.367181637306 0.600000000000
+chr1 14144000 14145000 Eya1 673.0 -156000 0.000891530461 0.873934387705 5.120143967809 0.600000000000
+chr1 14145000 14146000 Eya1 673.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000
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+chr1 14149000 14150000 Eya1 673.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000
+chr1 14150000 14151000 Eya1 673.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000
+chr1 14151000 14152000 Eya1 673.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000
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+chr1 14153000 14154000 Eya1 673.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000
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+chr1 14157000 14158000 Eya1 673.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000
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+chr1 14160000 14161000 Eya1 673.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000
+chr1 14161000 14162000 Eya1 673.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000
+chr1 14162000 14163000 Eya1 673.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000
+chr1 14163000 14164000 Eya1 673.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000
+chr1 14164000 14165000 Eya1 673.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000
+chr1 14165000 14166000 Eya1 673.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000
+chr1 14166000 14167000 Eya1 673.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000
+chr1 14167000 14168000 Eya1 673.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000
+chr1 14168000 14169000 Eya1 673.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000
+chr1 14169000 14170000 Eya1 673.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000
+chr1 14170000 14171000 Eya1 673.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000
+chr1 14171000 14172000 Eya1 673.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000
+chr1 14172000 14173000 Eya1 673.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000
+chr1 14173000 14174000 Eya1 673.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000
+chr1 14174000 14175000 Eya1 673.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000
+chr1 14175000 14176000 Eya1 673.0 -125000 0.000297176820 0.789042220648 0.916568982282 0.200000000000
+chr1 14176000 14177000 Eya1 673.0 -124000 0.000297176820 0.798137256530 0.908160092485 0.200000000000
+chr1 14177000 14178000 Eya1 673.0 -123000 0.000297176820 0.785510253584 0.798302018335 0.200000000000
+chr1 14178000 14179000 Eya1 673.0 -122000 0.000297176820 0.799644194656 0.925135047590 0.200000000000
+chr1 14179000 14180000 Eya1 673.0 -121000 0.000297176820 0.790961581141 0.883834378206 0.200000000000
+chr1 14180000 14181000 Eya1 673.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000
+chr1 14181000 14182000 Eya1 673.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000
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+chr1 14183000 14184000 Eya1 673.0 -117000 0.000297176820 0.774846873828 0.860777829009 0.200000000000
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+chr1 14185000 14186000 Eya1 673.0 -115000 0.000297176820 0.757379810911 0.761457309513 0.200000000000
+chr1 14186000 14187000 Eya1 673.0 -114000 0.000297176820 0.773895809279 0.811388936776 0.200000000000
+chr1 14187000 14188000 Eya1 673.0 -113000 0.000297176820 0.780251801078 0.891796850153 0.200000000000
+chr1 14188000 14189000 Eya1 673.0 -112000 0.000000000000 0.809192563048 0.000000000000 0.000000000000
+chr1 14189000 14190000 Eya1 673.0 -111000 0.000297176820 0.805959066383 1.064402690160 0.200000000000
+chr1 14190000 14191000 Eya1 673.0 -110000 0.000297176820 0.826154588365 1.207188418049 0.200000000000
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+chr1 14192000 14193000 Eya1 673.0 -108000 0.000297176820 0.785369993572 0.951821635672 0.200000000000
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+chr1 14200000 14201000 Eya1 673.0 -100000 0.001188707281 0.828442819541 4.888367915554 0.800000000000
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+chr1 14454000 14455000 Eya1 673.0 154000 0.000891530461 0.606160024614 1.356019866146 0.600000000000
+chr1 14455000 14456000 Eya1 673.0 155000 0.000594353640 0.609612095406 0.876012833675 0.400000000000
+chr1 14456000 14457000 Eya1 673.0 156000 0.000594353640 0.613314445827 0.876012833675 0.400000000000
+chr1 14457000 14458000 Eya1 673.0 157000 0.000594353640 0.602751520183 0.821489212945 0.400000000000
+chr1 14458000 14459000 Eya1 673.0 158000 0.001188707281 0.585293824856 1.583831204275 0.800000000000
+chr1 14459000 14460000 Eya1 673.0 159000 0.000594353640 0.573814787091 0.770345916308 0.400000000000
+chr1 14460000 14461000 Eya1 673.0 160000 0.001188707281 0.559100492248 1.517079697070 0.800000000000
+chr1 14461000 14462000 Eya1 673.0 161000 0.001188707281 0.533506885425 1.429450544260 0.800000000000
+chr1 14462000 14463000 Eya1 673.0 162000 0.001188707281 0.591476571829 1.616154290340 0.800000000000
+chr1 14463000 14464000 Eya1 673.0 163000 0.000594353640 0.593731273297 0.821489212945 0.400000000000
+chr1 14464000 14465000 Eya1 673.0 164000 0.000594353640 0.604924746422 0.857051516792 0.400000000000
+chr1 14465000 14466000 Eya1 673.0 165000 0.000000000000 0.620870359018 0.000000000000 0.000000000000
+chr1 14466000 14467000 Eya1 673.0 166000 0.000000000000 0.653063136379 0.000000000000 0.000000000000
+chr1 14467000 14468000 Eya1 673.0 167000 0.000000000000 0.616215444951 0.000000000000 0.000000000000
+chr1 14468000 14469000 Eya1 673.0 168000 0.000000000000 0.616137376589 0.000000000000 0.000000000000
+chr1 14469000 14470000 Eya1 673.0 169000 0.000000000000 0.600847921629 0.000000000000 0.000000000000
+chr1 14470000 14471000 Eya1 673.0 170000 0.000000000000 0.585658029501 0.000000000000 0.000000000000
+chr1 14471000 14472000 Eya1 673.0 171000 0.000000000000 0.601961893812 0.000000000000 0.000000000000
+chr1 14472000 14473000 Eya1 673.0 172000 0.000000000000 0.591031149544 0.000000000000 0.000000000000
+chr1 14473000 14474000 Eya1 673.0 173000 0.000000000000 0.574110012150 0.000000000000 0.000000000000
+chr1 14474000 14475000 Eya1 673.0 174000 0.000000000000 0.594064541193 0.000000000000 0.000000000000
+chr1 14475000 14476000 Eya1 673.0 175000 0.000000000000 0.586742846341 0.000000000000 0.000000000000
+chr1 14476000 14477000 Eya1 673.0 176000 0.000297176820 0.580281241496 0.421231702882 0.200000000000
+chr1 14477000 14478000 Eya1 673.0 177000 0.000297176820 0.600664600573 0.449952046478 0.200000000000
+chr1 14478000 14479000 Eya1 673.0 178000 0.000594353640 0.611923543314 0.933862738240 0.400000000000
+chr1 14479000 14480000 Eya1 673.0 179000 0.000594353640 0.616982108456 0.951821637197 0.400000000000
+chr1 14480000 14481000 Eya1 673.0 180000 0.001485884101 0.367009687936 2.512422592521 1.000000000000
+chr1 14481000 14482000 Eya1 673.0 181000 0.001188707281 0.637219432588 2.020192860178 0.800000000000
+chr1 14482000 14483000 Eya1 673.0 182000 0.001188707281 0.649572741436 2.128805380321 0.800000000000
+chr1 14483000 14484000 Eya1 673.0 183000 0.001783060921 0.359231506903 3.093420317586 1.200000000000
+chr1 14484000 14485000 Eya1 673.0 184000 0.002080237741 0.375416393977 3.380127570538 1.400000000000
+chr1 14485000 14486000 Eya1 673.0 185000 0.001188707281 0.617559413959 1.903643274393 0.800000000000
+chr1 14486000 14487000 Eya1 673.0 186000 0.001188707281 0.647906480781 2.106158514412 0.800000000000
+chr1 14487000 14488000 Eya1 673.0 187000 0.001188707281 0.651241359569 2.140312436513 0.800000000000
+chr1 14488000 14489000 Eya1 673.0 188000 0.000594353640 0.647869186187 1.058710697124 0.400000000000
+chr1 14489000 14490000 Eya1 673.0 189000 0.000297176820 0.671654971880 0.575520059550 0.200000000000
+chr1 14490000 14491000 Eya1 673.0 190000 0.000297176820 0.671941112135 0.578885673960 0.200000000000
+chr1 14491000 14492000 Eya1 673.0 191000 0.002080237741 0.341250160004 3.849589730333 1.400000000000
+chr1 14492000 14493000 Eya1 673.0 192000 0.003268945022 0.068166431915 5.982878858272 2.200000000000
+chr1 14493000 14494000 Eya1 673.0 193000 0.002971768202 0.059322876246 5.892229182196 2.000000000000
+chr1 14494000 14495000 Eya1 673.0 194000 0.003268945022 0.062511655285 6.294126893758 2.200000000000
+chr1 14495000 14496000 Eya1 673.0 195000 0.003268945022 0.056441264815 6.680269651133 2.200000000000
+chr1 14496000 14497000 Eya1 673.0 196000 0.002971768202 0.056496760292 6.072972410121 2.000000000000
+chr1 14497000 14498000 Eya1 673.0 197000 0.002080237741 0.335210836347 3.937080406684 1.400000000000
+chr1 14498000 14499000 Eya1 673.0 198000 0.002971768202 0.083110512066 4.852424033528 2.000000000000
+chr1 14499000 14500000 Eya1 673.0 199000 0.003343239227 0.073447408129 5.830530441735 2.250000000000
+chr1 14500000 14501000 Eya1 673.0 200000 0.004457652303 1.000000000000 7.575723225668 3.000000000000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,405 @@
+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3
+# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw
+#
+chr1 18893000 18894000 Tfap2d 472.0 -200000 0.001412429379 0.880044890460 8.554173074049 0.666666666667
+chr1 18894000 18895000 Tfap2d 472.0 -199000 0.001059322034 0.852151439574 5.040852007510 0.500000000000
+chr1 18895000 18896000 Tfap2d 472.0 -198000 0.000847457627 0.820756603944 3.282415254892 0.400000000000
+chr1 18896000 18897000 Tfap2d 472.0 -197000 0.000847457627 0.814190727178 3.136530131373 0.400000000000
+chr1 18897000 18898000 Tfap2d 472.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000
+chr1 18898000 18899000 Tfap2d 472.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000
+chr1 18899000 18900000 Tfap2d 472.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000
+chr1 18900000 18901000 Tfap2d 472.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000
+chr1 18901000 18902000 Tfap2d 472.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000
+chr1 18902000 18903000 Tfap2d 472.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000
+chr1 18903000 18904000 Tfap2d 472.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000
+chr1 18904000 18905000 Tfap2d 472.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000
+chr1 18905000 18906000 Tfap2d 472.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000
+chr1 18906000 18907000 Tfap2d 472.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000
+chr1 18907000 18908000 Tfap2d 472.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000
+chr1 18908000 18909000 Tfap2d 472.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000
+chr1 18909000 18910000 Tfap2d 472.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000
+chr1 18910000 18911000 Tfap2d 472.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000
+chr1 18911000 18912000 Tfap2d 472.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000
+chr1 18912000 18913000 Tfap2d 472.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000
+chr1 18913000 18914000 Tfap2d 472.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000
+chr1 18914000 18915000 Tfap2d 472.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000
+chr1 18915000 18916000 Tfap2d 472.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000
+chr1 18916000 18917000 Tfap2d 472.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000
+chr1 18917000 18918000 Tfap2d 472.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000
+chr1 18918000 18919000 Tfap2d 472.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000
+chr1 18919000 18920000 Tfap2d 472.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000
+chr1 18920000 18921000 Tfap2d 472.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000
+chr1 18921000 18922000 Tfap2d 472.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000
+chr1 18922000 18923000 Tfap2d 472.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000
+chr1 18923000 18924000 Tfap2d 472.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000
+chr1 18924000 18925000 Tfap2d 472.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000
+chr1 18925000 18926000 Tfap2d 472.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000
+chr1 18926000 18927000 Tfap2d 472.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000
+chr1 18927000 18928000 Tfap2d 472.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000
+chr1 18928000 18929000 Tfap2d 472.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000
+chr1 18929000 18930000 Tfap2d 472.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000
+chr1 18930000 18931000 Tfap2d 472.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000
+chr1 18931000 18932000 Tfap2d 472.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000
+chr1 18932000 18933000 Tfap2d 472.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000
+chr1 18933000 18934000 Tfap2d 472.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000
+chr1 18934000 18935000 Tfap2d 472.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000
+chr1 18935000 18936000 Tfap2d 472.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000
+chr1 18936000 18937000 Tfap2d 472.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000
+chr1 18937000 18938000 Tfap2d 472.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000
+chr1 18938000 18939000 Tfap2d 472.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000
+chr1 18939000 18940000 Tfap2d 472.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000
+chr1 18940000 18941000 Tfap2d 472.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000
+chr1 18941000 18942000 Tfap2d 472.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000
+chr1 18942000 18943000 Tfap2d 472.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000
+chr1 18943000 18944000 Tfap2d 472.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000
+chr1 18944000 18945000 Tfap2d 472.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000
+chr1 18945000 18946000 Tfap2d 472.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000
+chr1 18946000 18947000 Tfap2d 472.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000
+chr1 18947000 18948000 Tfap2d 472.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000
+chr1 18948000 18949000 Tfap2d 472.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000
+chr1 18949000 18950000 Tfap2d 472.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000
+chr1 18950000 18951000 Tfap2d 472.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000
+chr1 18951000 18952000 Tfap2d 472.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000
+chr1 18952000 18953000 Tfap2d 472.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000
+chr1 18953000 18954000 Tfap2d 472.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000
+chr1 18954000 18955000 Tfap2d 472.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000
+chr1 18955000 18956000 Tfap2d 472.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000
+chr1 18956000 18957000 Tfap2d 472.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000
+chr1 18957000 18958000 Tfap2d 472.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000
+chr1 18958000 18959000 Tfap2d 472.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000
+chr1 18959000 18960000 Tfap2d 472.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000
+chr1 18960000 18961000 Tfap2d 472.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000
+chr1 18961000 18962000 Tfap2d 472.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000
+chr1 18962000 18963000 Tfap2d 472.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000
+chr1 18963000 18964000 Tfap2d 472.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000
+chr1 18964000 18965000 Tfap2d 472.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000
+chr1 18965000 18966000 Tfap2d 472.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000
+chr1 18966000 18967000 Tfap2d 472.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000
+chr1 18967000 18968000 Tfap2d 472.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000
+chr1 18968000 18969000 Tfap2d 472.0 -125000 0.000000000000 0.789042220648 0.000000000000 0.000000000000
+chr1 18969000 18970000 Tfap2d 472.0 -124000 0.000000000000 0.798137256530 0.000000000000 0.000000000000
+chr1 18970000 18971000 Tfap2d 472.0 -123000 0.000000000000 0.785510253584 0.000000000000 0.000000000000
+chr1 18971000 18972000 Tfap2d 472.0 -122000 0.000000000000 0.799644194656 0.000000000000 0.000000000000
+chr1 18972000 18973000 Tfap2d 472.0 -121000 0.000000000000 0.790961581141 0.000000000000 0.000000000000
+chr1 18973000 18974000 Tfap2d 472.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000
+chr1 18974000 18975000 Tfap2d 472.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000
+chr1 18975000 18976000 Tfap2d 472.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000
+chr1 18976000 18977000 Tfap2d 472.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000
+chr1 18977000 18978000 Tfap2d 472.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000
+chr1 18978000 18979000 Tfap2d 472.0 -115000 0.001271186441 0.757379810911 3.257165906583 0.600000000000
+chr1 18979000 18980000 Tfap2d 472.0 -114000 0.001271186441 0.773895809279 3.470750557945 0.600000000000
+chr1 18980000 18981000 Tfap2d 472.0 -113000 0.001271186441 0.780251801078 3.814698814531 0.600000000000
+chr1 18981000 18982000 Tfap2d 472.0 -112000 0.001271186441 0.809192563048 4.602517039860 0.600000000000
+chr1 18982000 18983000 Tfap2d 472.0 -111000 0.001271186441 0.805959066383 4.553027608970 0.600000000000
+chr1 18983000 18984000 Tfap2d 472.0 -110000 0.000000000000 0.826154588365 0.000000000000 0.000000000000
+chr1 18984000 18985000 Tfap2d 472.0 -109000 0.000000000000 0.796608508060 0.000000000000 0.000000000000
+chr1 18985000 18986000 Tfap2d 472.0 -108000 0.000000000000 0.785369993572 0.000000000000 0.000000000000
+chr1 18986000 18987000 Tfap2d 472.0 -107000 0.000000000000 0.763585636187 0.000000000000 0.000000000000
+chr1 18987000 18988000 Tfap2d 472.0 -106000 0.000000000000 0.796206503792 0.000000000000 0.000000000000
+chr1 18988000 18989000 Tfap2d 472.0 -105000 0.000000000000 0.801881199084 0.000000000000 0.000000000000
+chr1 18989000 18990000 Tfap2d 472.0 -104000 0.000000000000 0.830453698245 0.000000000000 0.000000000000
+chr1 18990000 18991000 Tfap2d 472.0 -103000 0.000000000000 0.843960603767 0.000000000000 0.000000000000
+chr1 18991000 18992000 Tfap2d 472.0 -102000 0.000000000000 1.000000000000 0.000000000000 0.000000000000
+chr1 18992000 18993000 Tfap2d 472.0 -101000 0.000000000000 0.853858772997 0.000000000000 0.000000000000
+chr1 18993000 18994000 Tfap2d 472.0 -100000 0.000000000000 0.828442819541 0.000000000000 0.000000000000
+chr1 18994000 18995000 Tfap2d 472.0 -99000 0.000000000000 0.815159530773 0.000000000000 0.000000000000
+chr1 18995000 18996000 Tfap2d 472.0 -98000 0.000000000000 0.803890742201 0.000000000000 0.000000000000
+chr1 18996000 18997000 Tfap2d 472.0 -97000 0.000000000000 0.793812954579 0.000000000000 0.000000000000
+chr1 18997000 18998000 Tfap2d 472.0 -96000 0.000000000000 0.776513211062 0.000000000000 0.000000000000
+chr1 18998000 18999000 Tfap2d 472.0 -95000 0.000000000000 0.769795672212 0.000000000000 0.000000000000
+chr1 18999000 19000000 Tfap2d 472.0 -94000 0.000423728814 0.745179566394 1.102686374757 0.200000000000
+chr1 19000000 19001000 Tfap2d 472.0 -93000 0.000423728814 0.740519396446 1.061231999455 0.200000000000
+chr1 19001000 19002000 Tfap2d 472.0 -92000 0.000423728814 0.723302632894 0.779800308873 0.200000000000
+chr1 19002000 19003000 Tfap2d 472.0 -91000 0.000423728814 0.723801019412 0.735124249200 0.200000000000
+chr1 19003000 19004000 Tfap2d 472.0 -90000 0.000423728814 0.727642253997 0.727545648641 0.200000000000
+chr1 19004000 19005000 Tfap2d 472.0 -89000 0.000000000000 0.754315244689 0.000000000000 0.000000000000
+chr1 19005000 19006000 Tfap2d 472.0 -88000 0.000000000000 0.748521601906 0.000000000000 0.000000000000
+chr1 19006000 19007000 Tfap2d 472.0 -87000 0.000000000000 0.773106724449 0.000000000000 0.000000000000
+chr1 19007000 19008000 Tfap2d 472.0 -86000 0.000000000000 0.763860606499 0.000000000000 0.000000000000
+chr1 19008000 19009000 Tfap2d 472.0 -85000 0.000000000000 0.758432715512 0.000000000000 0.000000000000
+chr1 19009000 19010000 Tfap2d 472.0 -84000 0.000000000000 0.763116447672 0.000000000000 0.000000000000
+chr1 19010000 19011000 Tfap2d 472.0 -83000 0.000000000000 0.774521391995 0.000000000000 0.000000000000
+chr1 19011000 19012000 Tfap2d 472.0 -82000 0.000000000000 0.783854637009 0.000000000000 0.000000000000
+chr1 19012000 19013000 Tfap2d 472.0 -81000 0.000000000000 0.804191983653 0.000000000000 0.000000000000
+chr1 19013000 19014000 Tfap2d 472.0 -80000 0.000000000000 0.820453383054 0.000000000000 0.000000000000
+chr1 19014000 19015000 Tfap2d 472.0 -79000 0.000000000000 0.787759592071 0.000000000000 0.000000000000
+chr1 19015000 19016000 Tfap2d 472.0 -78000 0.000423728814 0.772054180765 1.238104000914 0.200000000000
+chr1 19016000 19017000 Tfap2d 472.0 -77000 0.000423728814 0.748083315410 0.980165665600 0.200000000000
+chr1 19017000 19018000 Tfap2d 472.0 -76000 0.000423728814 0.731431977548 0.934727521861 0.200000000000
+chr1 19018000 19019000 Tfap2d 472.0 -75000 0.000423728814 0.749949052776 1.022781564413 0.200000000000
+chr1 19019000 19020000 Tfap2d 472.0 -74000 0.000423728814 0.747025168339 1.001020254378 0.200000000000
+chr1 19020000 19021000 Tfap2d 472.0 -73000 0.000000000000 0.710963418826 0.000000000000 0.000000000000
+chr1 19021000 19022000 Tfap2d 472.0 -72000 0.000000000000 0.705350367139 0.000000000000 0.000000000000
+chr1 19022000 19023000 Tfap2d 472.0 -71000 0.000000000000 0.704650731059 0.000000000000 0.000000000000
+chr1 19023000 19024000 Tfap2d 472.0 -70000 0.000000000000 0.701341140093 0.000000000000 0.000000000000
+chr1 19024000 19025000 Tfap2d 472.0 -69000 0.000000000000 0.701616077559 0.000000000000 0.000000000000
+chr1 19025000 19026000 Tfap2d 472.0 -68000 0.000000000000 0.739823898153 0.000000000000 0.000000000000
+chr1 19026000 19027000 Tfap2d 472.0 -67000 0.000000000000 0.735987467208 0.000000000000 0.000000000000
+chr1 19027000 19028000 Tfap2d 472.0 -66000 0.000000000000 0.732519280463 0.000000000000 0.000000000000
+chr1 19028000 19029000 Tfap2d 472.0 -65000 0.000000000000 0.711136879063 0.000000000000 0.000000000000
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+chr1 19215000 19216000 Tfap2d 472.0 122000 0.000847457627 0.530490537983 0.953674702560 0.400000000000
+chr1 19216000 19217000 Tfap2d 472.0 123000 0.000847457627 0.530562527645 0.973405903461 0.400000000000
+chr1 19217000 19218000 Tfap2d 472.0 124000 0.000847457627 0.545553903451 1.034020922346 0.400000000000
+chr1 19218000 19219000 Tfap2d 472.0 125000 0.000847457627 0.564891705893 1.129150847963 0.400000000000
+chr1 19219000 19220000 Tfap2d 472.0 126000 0.001271186441 0.540351446443 1.579968536413 0.600000000000
+chr1 19220000 19221000 Tfap2d 472.0 127000 0.000847457627 0.544910167356 1.077434014837 0.400000000000
+chr1 19221000 19222000 Tfap2d 472.0 128000 0.000847457627 0.559785966334 1.129150847963 0.400000000000
+chr1 19222000 19223000 Tfap2d 472.0 129000 0.000847457627 0.550703059901 1.089913945607 0.400000000000
+chr1 19223000 19224000 Tfap2d 472.0 130000 0.000847457627 0.549227272107 1.019089212169 0.400000000000
+chr1 19224000 19225000 Tfap2d 472.0 131000 0.000423728814 0.561819843709 0.553505317542 0.200000000000
+chr1 19225000 19226000 Tfap2d 472.0 132000 0.000423728814 0.585853557394 0.566842795180 0.200000000000
+chr1 19226000 19227000 Tfap2d 472.0 133000 0.000423728814 0.595436468036 0.511390782207 0.200000000000
+chr1 19227000 19228000 Tfap2d 472.0 134000 0.001271186441 0.603093891321 1.597854972809 0.600000000000
+chr1 19228000 19229000 Tfap2d 472.0 135000 0.001694915254 0.604088556070 2.231523414735 0.800000000000
+chr1 19229000 19230000 Tfap2d 472.0 136000 0.002118644068 0.411260634766 2.556953911034 1.000000000000
+chr1 19230000 19231000 Tfap2d 472.0 137000 0.002542372881 0.432301751883 2.861024107679 1.200000000000
+chr1 19231000 19232000 Tfap2d 472.0 138000 0.002542372881 0.454889032857 3.183695998364 1.200000000000
+chr1 19232000 19233000 Tfap2d 472.0 139000 0.001694915254 0.585442994010 1.987941631835 0.800000000000
+chr1 19233000 19234000 Tfap2d 472.0 140000 0.001271186441 0.584686184662 1.339973315587 0.600000000000
+chr1 19234000 19235000 Tfap2d 472.0 141000 0.000847457627 0.604143773708 0.963439290036 0.400000000000
+chr1 19235000 19236000 Tfap2d 472.0 142000 0.000423728814 0.632888736121 0.538717007419 0.200000000000
+chr1 19236000 19237000 Tfap2d 472.0 143000 0.001271186441 0.631972051038 1.539751155194 0.600000000000
+chr1 19237000 19238000 Tfap2d 472.0 144000 0.001271186441 0.630242651353 1.749717221137 0.600000000000
+chr1 19238000 19239000 Tfap2d 472.0 145000 0.001271186441 0.654163481416 2.117157840635 0.600000000000
+chr1 19239000 19240000 Tfap2d 472.0 146000 0.001694915254 0.637809455886 2.601730063600 0.800000000000
+chr1 19240000 19241000 Tfap2d 472.0 147000 0.001271186441 0.621469775934 1.857155998658 0.600000000000
+chr1 19241000 19242000 Tfap2d 472.0 148000 0.000423728814 0.608829914540 0.641562981525 0.200000000000
+chr1 19242000 19243000 Tfap2d 472.0 149000 0.000423728814 0.611099504790 0.659550728811 0.200000000000
+chr1 19243000 19244000 Tfap2d 472.0 150000 0.000847457627 0.594707930687 1.227337877296 0.400000000000
+chr1 19244000 19245000 Tfap2d 472.0 151000 0.001271186441 0.605065312757 1.942346641449 0.600000000000
+chr1 19245000 19246000 Tfap2d 472.0 152000 0.001271186441 0.593714719997 1.881918078824 0.600000000000
+chr1 19246000 19247000 Tfap2d 472.0 153000 0.002118644068 0.403579514801 3.164660446662 1.000000000000
+chr1 19247000 19248000 Tfap2d 472.0 154000 0.002118644068 0.393839975386 3.222462464392 1.000000000000
+chr1 19248000 19249000 Tfap2d 472.0 155000 0.001694915254 0.609612095406 2.498121343489 0.800000000000
+chr1 19249000 19250000 Tfap2d 472.0 156000 0.000847457627 0.613314445827 1.249060671745 0.400000000000
+chr1 19250000 19251000 Tfap2d 472.0 157000 0.000847457627 0.602751520183 1.171318305746 0.400000000000
+chr1 19251000 19252000 Tfap2d 472.0 158000 0.000000000000 0.585293824856 0.000000000000 0.000000000000
+chr1 19252000 19253000 Tfap2d 472.0 159000 0.000847457627 0.573814787091 1.098395766262 0.400000000000
+chr1 19253000 19254000 Tfap2d 472.0 160000 0.000847457627 0.559100492248 1.081562114542 0.400000000000
+chr1 19254000 19255000 Tfap2d 472.0 161000 0.001694915254 0.533506885425 2.038178424337 0.800000000000
+chr1 19255000 19256000 Tfap2d 472.0 162000 0.001694915254 0.591476571829 2.304389486014 0.800000000000
+chr1 19256000 19257000 Tfap2d 472.0 163000 0.002542372881 0.406268726703 3.513954917238 1.200000000000
+chr1 19257000 19258000 Tfap2d 472.0 164000 0.002118644068 0.395075253578 3.055061815685 1.000000000000
+chr1 19258000 19259000 Tfap2d 472.0 165000 0.002118644068 0.379129640982 3.252162579500 1.000000000000
+chr1 19259000 19260000 Tfap2d 472.0 166000 0.001694915254 0.653063136379 2.822877120847 0.800000000000
+chr1 19260000 19261000 Tfap2d 472.0 167000 0.001694915254 0.616215444951 2.701317818024 0.800000000000
+chr1 19261000 19262000 Tfap2d 472.0 168000 0.000847457627 0.616137376589 1.312966101957 0.400000000000
+chr1 19262000 19263000 Tfap2d 472.0 169000 0.000423728814 0.600847921629 0.593041411154 0.200000000000
+chr1 19263000 19264000 Tfap2d 472.0 170000 0.000423728814 0.585658029501 0.573755512251 0.200000000000
+chr1 19264000 19265000 Tfap2d 472.0 171000 0.000000000000 0.601961893812 0.000000000000 0.000000000000
+chr1 19265000 19266000 Tfap2d 472.0 172000 0.000000000000 0.591031149544 0.000000000000 0.000000000000
+chr1 19266000 19267000 Tfap2d 472.0 173000 0.000000000000 0.574110012150 0.000000000000 0.000000000000
+chr1 19267000 19268000 Tfap2d 472.0 174000 0.000000000000 0.594064541193 0.000000000000 0.000000000000
+chr1 19268000 19269000 Tfap2d 472.0 175000 0.000423728814 0.586742846341 0.608378689139 0.200000000000
+chr1 19269000 19270000 Tfap2d 472.0 176000 0.000423728814 0.580281241496 0.600612152627 0.200000000000
+chr1 19270000 19271000 Tfap2d 472.0 177000 0.000423728814 0.600664600573 0.641562981525 0.200000000000
+chr1 19271000 19272000 Tfap2d 472.0 178000 0.000423728814 0.611923543314 0.665772905546 0.200000000000
+chr1 19272000 19273000 Tfap2d 472.0 179000 0.000423728814 0.616982108456 0.678576230756 0.200000000000
+chr1 19273000 19274000 Tfap2d 472.0 180000 0.000000000000 0.632990312064 0.000000000000 0.000000000000
+chr1 19274000 19275000 Tfap2d 472.0 181000 0.000000000000 0.637219432588 0.000000000000 0.000000000000
+chr1 19275000 19276000 Tfap2d 472.0 182000 0.000423728814 0.649572741436 0.758837934828 0.200000000000
+chr1 19276000 19277000 Tfap2d 472.0 183000 0.000423728814 0.640768493097 0.735124249200 0.200000000000
+chr1 19277000 19278000 Tfap2d 472.0 184000 0.000423728814 0.624583606023 0.688506614701 0.200000000000
+chr1 19278000 19279000 Tfap2d 472.0 185000 0.000423728814 0.617559413959 0.678576230756 0.200000000000
+chr1 19279000 19280000 Tfap2d 472.0 186000 0.000423728814 0.647906480781 0.750765190784 0.200000000000
+chr1 19280000 19281000 Tfap2d 472.0 187000 0.000000000000 0.651241359569 0.000000000000 0.000000000000
+chr1 19281000 19282000 Tfap2d 472.0 188000 0.000000000000 0.647869186187 0.000000000000 0.000000000000
+chr1 19282000 19283000 Tfap2d 472.0 189000 0.000000000000 0.671654971880 0.000000000000 0.000000000000
+chr1 19283000 19284000 Tfap2d 472.0 190000 0.000000000000 0.671941112135 0.000000000000 0.000000000000
+chr1 19284000 19285000 Tfap2d 472.0 191000 0.000000000000 0.658749839996 0.000000000000 0.000000000000
+chr1 19285000 19286000 Tfap2d 472.0 192000 0.000000000000 0.655383997647 0.000000000000 0.000000000000
+chr1 19286000 19287000 Tfap2d 472.0 193000 0.000000000000 0.676994533785 0.000000000000 0.000000000000
+chr1 19287000 19288000 Tfap2d 472.0 194000 0.000000000000 0.669325066593 0.000000000000 0.000000000000
+chr1 19288000 19289000 Tfap2d 472.0 195000 0.000000000000 0.685162890895 0.000000000000 0.000000000000
+chr1 19289000 19290000 Tfap2d 472.0 196000 0.000000000000 0.685254654751 0.000000000000 0.000000000000
+chr1 19290000 19291000 Tfap2d 472.0 197000 0.000000000000 0.664789163653 0.000000000000 0.000000000000
+chr1 19291000 19292000 Tfap2d 472.0 198000 0.000000000000 0.623323575813 0.000000000000 0.000000000000
+chr1 19292000 19293000 Tfap2d 472.0 199000 0.000000000000 0.643728679260 0.000000000000 0.000000000000
+chr1 19293000 19294000 Tfap2d 472.0 200000 0.000000000000 0.637624930855 0.000000000000 0.000000000000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,405 @@
+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3
+# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw
+#
+chr1 4287000 4288000 Sox17 810.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000
+chr1 4288000 4289000 Sox17 810.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000
+chr1 4289000 4290000 Sox17 810.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000
+chr1 4290000 4291000 Sox17 810.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000
+chr1 4291000 4292000 Sox17 810.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000
+chr1 4292000 4293000 Sox17 810.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000
+chr1 4293000 4294000 Sox17 810.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000
+chr1 4294000 4295000 Sox17 810.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000
+chr1 4295000 4296000 Sox17 810.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000
+chr1 4296000 4297000 Sox17 810.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000
+chr1 4297000 4298000 Sox17 810.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000
+chr1 4298000 4299000 Sox17 810.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000
+chr1 4299000 4300000 Sox17 810.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000
+chr1 4300000 4301000 Sox17 810.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000
+chr1 4301000 4302000 Sox17 810.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000
+chr1 4302000 4303000 Sox17 810.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000
+chr1 4303000 4304000 Sox17 810.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000
+chr1 4304000 4305000 Sox17 810.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000
+chr1 4305000 4306000 Sox17 810.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000
+chr1 4306000 4307000 Sox17 810.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000
+chr1 4307000 4308000 Sox17 810.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000
+chr1 4308000 4309000 Sox17 810.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000
+chr1 4309000 4310000 Sox17 810.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000
+chr1 4310000 4311000 Sox17 810.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000
+chr1 4311000 4312000 Sox17 810.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000
+chr1 4312000 4313000 Sox17 810.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000
+chr1 4313000 4314000 Sox17 810.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000
+chr1 4314000 4315000 Sox17 810.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000
+chr1 4315000 4316000 Sox17 810.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000
+chr1 4316000 4317000 Sox17 810.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000
+chr1 4317000 4318000 Sox17 810.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000
+chr1 4318000 4319000 Sox17 810.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000
+chr1 4319000 4320000 Sox17 810.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000
+chr1 4320000 4321000 Sox17 810.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000
+chr1 4321000 4322000 Sox17 810.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000
+chr1 4322000 4323000 Sox17 810.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000
+chr1 4323000 4324000 Sox17 810.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000
+chr1 4324000 4325000 Sox17 810.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000
+chr1 4325000 4326000 Sox17 810.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000
+chr1 4326000 4327000 Sox17 810.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000
+chr1 4327000 4328000 Sox17 810.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000
+chr1 4328000 4329000 Sox17 810.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000
+chr1 4329000 4330000 Sox17 810.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000
+chr1 4330000 4331000 Sox17 810.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000
+chr1 4331000 4332000 Sox17 810.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000
+chr1 4332000 4333000 Sox17 810.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000
+chr1 4333000 4334000 Sox17 810.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000
+chr1 4334000 4335000 Sox17 810.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000
+chr1 4335000 4336000 Sox17 810.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000
+chr1 4336000 4337000 Sox17 810.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000
+chr1 4337000 4338000 Sox17 810.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000
+chr1 4338000 4339000 Sox17 810.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000
+chr1 4339000 4340000 Sox17 810.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000
+chr1 4340000 4341000 Sox17 810.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000
+chr1 4341000 4342000 Sox17 810.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000
+chr1 4342000 4343000 Sox17 810.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000
+chr1 4343000 4344000 Sox17 810.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000
+chr1 4344000 4345000 Sox17 810.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000
+chr1 4345000 4346000 Sox17 810.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000
+chr1 4346000 4347000 Sox17 810.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000
+chr1 4347000 4348000 Sox17 810.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000
+chr1 4348000 4349000 Sox17 810.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000
+chr1 4349000 4350000 Sox17 810.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000
+chr1 4350000 4351000 Sox17 810.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000
+chr1 4351000 4352000 Sox17 810.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000
+chr1 4352000 4353000 Sox17 810.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000
+chr1 4353000 4354000 Sox17 810.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000
+chr1 4354000 4355000 Sox17 810.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000
+chr1 4355000 4356000 Sox17 810.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000
+chr1 4356000 4357000 Sox17 810.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000
+chr1 4357000 4358000 Sox17 810.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000
+chr1 4358000 4359000 Sox17 810.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000
+chr1 4359000 4360000 Sox17 810.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000
+chr1 4360000 4361000 Sox17 810.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000
+chr1 4361000 4362000 Sox17 810.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000
+chr1 4362000 4363000 Sox17 810.0 -125000 0.000000000000 0.789042220648 0.000000000000 0.000000000000
+chr1 4363000 4364000 Sox17 810.0 -124000 0.000000000000 0.798137256530 0.000000000000 0.000000000000
+chr1 4364000 4365000 Sox17 810.0 -123000 0.000000000000 0.785510253584 0.000000000000 0.000000000000
+chr1 4365000 4366000 Sox17 810.0 -122000 0.000000000000 0.799644194656 0.000000000000 0.000000000000
+chr1 4366000 4367000 Sox17 810.0 -121000 0.000000000000 0.790961581141 0.000000000000 0.000000000000
+chr1 4367000 4368000 Sox17 810.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000
+chr1 4368000 4369000 Sox17 810.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000
+chr1 4369000 4370000 Sox17 810.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000
+chr1 4370000 4371000 Sox17 810.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000
+chr1 4371000 4372000 Sox17 810.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000
+chr1 4372000 4373000 Sox17 810.0 -115000 0.000000000000 0.757379810911 0.000000000000 0.000000000000
+chr1 4373000 4374000 Sox17 810.0 -114000 0.000000000000 0.773895809279 0.000000000000 0.000000000000
+chr1 4374000 4375000 Sox17 810.0 -113000 0.000000000000 0.780251801078 0.000000000000 0.000000000000
+chr1 4375000 4376000 Sox17 810.0 -112000 0.000000000000 0.809192563048 0.000000000000 0.000000000000
+chr1 4376000 4377000 Sox17 810.0 -111000 0.000000000000 0.805959066383 0.000000000000 0.000000000000
+chr1 4377000 4378000 Sox17 810.0 -110000 0.000000000000 0.826154588365 0.000000000000 0.000000000000
+chr1 4378000 4379000 Sox17 810.0 -109000 0.000000000000 0.796608508060 0.000000000000 0.000000000000
+chr1 4379000 4380000 Sox17 810.0 -108000 0.000000000000 0.785369993572 0.000000000000 0.000000000000
+chr1 4380000 4381000 Sox17 810.0 -107000 0.000000000000 0.763585636187 0.000000000000 0.000000000000
+chr1 4381000 4382000 Sox17 810.0 -106000 0.000000000000 0.796206503792 0.000000000000 0.000000000000
+chr1 4382000 4383000 Sox17 810.0 -105000 0.000000000000 0.801881199084 0.000000000000 0.000000000000
+chr1 4383000 4384000 Sox17 810.0 -104000 0.000000000000 0.830453698245 0.000000000000 0.000000000000
+chr1 4384000 4385000 Sox17 810.0 -103000 0.000000000000 0.843960603767 0.000000000000 0.000000000000
+chr1 4385000 4386000 Sox17 810.0 -102000 0.000000000000 1.000000000000 0.000000000000 0.000000000000
+chr1 4386000 4387000 Sox17 810.0 -101000 0.000000000000 0.853858772997 0.000000000000 0.000000000000
+chr1 4387000 4388000 Sox17 810.0 -100000 0.000000000000 0.828442819541 0.000000000000 0.000000000000
+chr1 4388000 4389000 Sox17 810.0 -99000 0.000000000000 0.815159530773 0.000000000000 0.000000000000
+chr1 4389000 4390000 Sox17 810.0 -98000 0.000000000000 0.803890742201 0.000000000000 0.000000000000
+chr1 4390000 4391000 Sox17 810.0 -97000 0.000000000000 0.793812954579 0.000000000000 0.000000000000
+chr1 4391000 4392000 Sox17 810.0 -96000 0.000000000000 0.776513211062 0.000000000000 0.000000000000
+chr1 4392000 4393000 Sox17 810.0 -95000 0.000000000000 0.769795672212 0.000000000000 0.000000000000
+chr1 4393000 4394000 Sox17 810.0 -94000 0.000000000000 0.745179566394 0.000000000000 0.000000000000
+chr1 4394000 4395000 Sox17 810.0 -93000 0.000000000000 0.740519396446 0.000000000000 0.000000000000
+chr1 4395000 4396000 Sox17 810.0 -92000 0.000000000000 0.723302632894 0.000000000000 0.000000000000
+chr1 4396000 4397000 Sox17 810.0 -91000 0.000000000000 0.723801019412 0.000000000000 0.000000000000
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+chr1 4596000 4597000 Sox17 810.0 109000 0.000987654321 0.499669178563 0.934622615061 0.800000000000
+chr1 4597000 4598000 Sox17 810.0 110000 0.000493827160 0.503445250814 0.483804647926 0.400000000000
+chr1 4598000 4599000 Sox17 810.0 111000 0.000493827160 0.472832134979 0.458199387818 0.400000000000
+chr1 4599000 4600000 Sox17 810.0 112000 0.000740740741 0.479967223270 0.704972486820 0.600000000000
+chr1 4600000 4601000 Sox17 810.0 113000 0.000987654321 0.490923249210 0.964771731912 0.800000000000
+chr1 4601000 4602000 Sox17 810.0 114000 0.001234567901 0.546619266505 1.188537429714 1.000000000000
+chr1 4602000 4603000 Sox17 810.0 115000 0.001234567901 0.530333832375 1.198932800900 1.000000000000
+chr1 4603000 4604000 Sox17 810.0 116000 0.001728395062 0.494064335500 1.931971580617 1.400000000000
+chr1 4604000 4605000 Sox17 810.0 117000 0.001234567901 0.476623517933 1.408335447937 1.000000000000
+chr1 4605000 4606000 Sox17 810.0 118000 0.000987654321 0.529451256365 1.142316530120 0.800000000000
+chr1 4606000 4607000 Sox17 810.0 119000 0.000987654321 0.533356831096 1.115210713937 0.800000000000
+chr1 4607000 4608000 Sox17 810.0 120000 0.000987654321 0.516584121708 1.100291506945 0.800000000000
+chr1 4608000 4609000 Sox17 810.0 121000 0.000493827160 0.535771528777 0.541097303510 0.400000000000
+chr1 4609000 4610000 Sox17 810.0 122000 0.000493827160 0.530490537983 0.555721555072 0.400000000000
+chr1 4610000 4611000 Sox17 810.0 123000 0.000987654321 0.530562527645 1.134438485021 0.800000000000
+chr1 4611000 4612000 Sox17 810.0 124000 0.000493827160 0.545553903451 0.602540586849 0.400000000000
+chr1 4612000 4613000 Sox17 810.0 125000 0.000493827160 0.564891705893 0.657974321282 0.400000000000
+chr1 4613000 4614000 Sox17 810.0 126000 0.000493827160 0.540351446443 0.613782015792 0.400000000000
+chr1 4614000 4615000 Sox17 810.0 127000 0.000493827160 0.544910167356 0.627838092596 0.400000000000
+chr1 4615000 4616000 Sox17 810.0 128000 0.000246913580 0.559785966334 0.328987160641 0.200000000000
+chr1 4616000 4617000 Sox17 810.0 129000 0.000246913580 0.550703059901 0.317555174276 0.200000000000
+chr1 4617000 4618000 Sox17 810.0 130000 0.000246913580 0.549227272107 0.296919819842 0.200000000000
+chr1 4618000 4619000 Sox17 810.0 131000 0.000246913580 0.561819843709 0.322536431950 0.200000000000
+chr1 4619000 4620000 Sox17 810.0 132000 0.000246913580 0.585853557394 0.330308394228 0.200000000000
+chr1 4620000 4621000 Sox17 810.0 133000 0.000493827160 0.595436468036 0.595991232596 0.400000000000
+chr1 4621000 4622000 Sox17 810.0 134000 0.000493827160 0.603093891321 0.620730491495 0.400000000000
+chr1 4622000 4623000 Sox17 810.0 135000 0.000493827160 0.604088556070 0.650172254170 0.400000000000
+chr1 4623000 4624000 Sox17 810.0 136000 0.000740740741 0.588739365234 0.893986848895 0.600000000000
+chr1 4624000 4625000 Sox17 810.0 137000 0.001234567901 0.432301751883 1.389303887680 1.000000000000
+chr1 4625000 4626000 Sox17 810.0 138000 0.000740740741 0.545110967143 0.927595377301 0.600000000000
+chr1 4626000 4627000 Sox17 810.0 139000 0.000740740741 0.585442994010 0.868804120580 0.600000000000
+chr1 4627000 4628000 Sox17 810.0 140000 0.000740740741 0.584686184662 0.780823956737 0.600000000000
+chr1 4628000 4629000 Sox17 810.0 141000 0.000493827160 0.604143773708 0.561411536910 0.400000000000
+chr1 4629000 4630000 Sox17 810.0 142000 0.000493827160 0.632888736121 0.627838092596 0.400000000000
+chr1 4630000 4631000 Sox17 810.0 143000 0.000493827160 0.631972051038 0.598158473458 0.400000000000
+chr1 4631000 4632000 Sox17 810.0 144000 0.000493827160 0.630242651353 0.679725537759 0.400000000000
+chr1 4632000 4633000 Sox17 810.0 145000 0.000493827160 0.654163481416 0.822467901876 0.400000000000
+chr1 4633000 4634000 Sox17 810.0 146000 0.000493827160 0.637809455886 0.758034932111 0.400000000000
+chr1 4634000 4635000 Sox17 810.0 147000 0.000000000000 0.621469775934 0.000000000000 0.000000000000
+chr1 4635000 4636000 Sox17 810.0 148000 0.000246913580 0.608829914540 0.373849046024 0.200000000000
+chr1 4636000 4637000 Sox17 810.0 149000 0.000246913580 0.611099504790 0.384330795060 0.200000000000
+chr1 4637000 4638000 Sox17 810.0 150000 0.000246913580 0.594707930687 0.357594739558 0.200000000000
+chr1 4638000 4639000 Sox17 810.0 151000 0.000246913580 0.605065312757 0.377278853812 0.200000000000
+chr1 4639000 4640000 Sox17 810.0 152000 0.000246913580 0.593714719997 0.365541289385 0.200000000000
+chr1 4640000 4641000 Sox17 810.0 153000 0.000000000000 0.596420485199 0.000000000000 0.000000000000
+chr1 4641000 4642000 Sox17 810.0 154000 0.000246913580 0.606160024614 0.375556119307 0.200000000000
+chr1 4642000 4643000 Sox17 810.0 155000 0.000246913580 0.609612095406 0.363923850039 0.200000000000
+chr1 4643000 4644000 Sox17 810.0 156000 0.000246913580 0.613314445827 0.363923850039 0.200000000000
+chr1 4644000 4645000 Sox17 810.0 157000 0.000246913580 0.602751520183 0.341272987847 0.200000000000
+chr1 4645000 4646000 Sox17 810.0 158000 0.000246913580 0.585293824856 0.328987160641 0.200000000000
+chr1 4646000 4647000 Sox17 810.0 159000 0.000246913580 0.573814787091 0.320026420787 0.200000000000
+chr1 4647000 4648000 Sox17 810.0 160000 0.000246913580 0.559100492248 0.315121801274 0.200000000000
+chr1 4648000 4649000 Sox17 810.0 161000 0.000493827160 0.533506885425 0.593839639683 0.400000000000
+chr1 4649000 4650000 Sox17 810.0 162000 0.000493827160 0.591476571829 0.671402368765 0.400000000000
+chr1 4650000 4651000 Sox17 810.0 163000 0.000493827160 0.593731273297 0.682545975694 0.400000000000
+chr1 4651000 4652000 Sox17 810.0 164000 0.000493827160 0.604924746422 0.712093420742 0.400000000000
+chr1 4652000 4653000 Sox17 810.0 165000 0.000987654321 0.620870359018 1.516069864221 0.800000000000
+chr1 4653000 4654000 Sox17 810.0 166000 0.000987654321 0.653063136379 1.644935803753 0.800000000000
+chr1 4654000 4655000 Sox17 810.0 167000 0.000987654321 0.616215444951 1.574101247046 0.800000000000
+chr1 4655000 4656000 Sox17 810.0 168000 0.001481481481 0.383862623411 2.295259259717 1.200000000000
+chr1 4656000 4657000 Sox17 810.0 169000 0.001728395062 0.399152078371 2.419023237597 1.400000000000
+chr1 4657000 4658000 Sox17 810.0 170000 0.001234567901 0.414341970499 1.671682727052 1.000000000000
+chr1 4658000 4659000 Sox17 810.0 171000 0.000987654321 0.601961893812 1.353856628464 0.800000000000
+chr1 4659000 4660000 Sox17 810.0 172000 0.000987654321 0.591031149544 1.270220697103 0.800000000000
+chr1 4660000 4661000 Sox17 810.0 173000 0.000493827160 0.574110012150 0.647612520865 0.400000000000
+chr1 4661000 4662000 Sox17 810.0 174000 0.000246913580 0.594064541193 0.342694958640 0.200000000000
+chr1 4662000 4663000 Sox17 810.0 175000 0.000246913580 0.586742846341 0.354512026264 0.200000000000
+chr1 4663000 4664000 Sox17 810.0 176000 0.000246913580 0.580281241496 0.349986340790 0.200000000000
+chr1 4664000 4665000 Sox17 810.0 177000 0.000246913580 0.600664600573 0.373849046024 0.200000000000
+chr1 4665000 4666000 Sox17 810.0 178000 0.000493827160 0.611923543314 0.775913114612 0.400000000000
+chr1 4666000 4667000 Sox17 810.0 179000 0.000246913580 0.616982108456 0.395417260391 0.200000000000
+chr1 4667000 4668000 Sox17 810.0 180000 0.000246913580 0.632990312064 0.417496396239 0.200000000000
+chr1 4668000 4669000 Sox17 810.0 181000 0.000246913580 0.637219432588 0.419626479907 0.200000000000
+chr1 4669000 4670000 Sox17 810.0 182000 0.000246913580 0.649572741436 0.442187043505 0.200000000000
+chr1 4670000 4671000 Sox17 810.0 183000 0.000000000000 0.640768493097 0.000000000000 0.000000000000
+chr1 4671000 4672000 Sox17 810.0 184000 0.000246913580 0.624583606023 0.401203854492 0.200000000000
+chr1 4672000 4673000 Sox17 810.0 185000 0.000246913580 0.617559413959 0.395417260391 0.200000000000
+chr1 4673000 4674000 Sox17 810.0 186000 0.000246913580 0.647906480781 0.437482925987 0.200000000000
+chr1 4674000 4675000 Sox17 810.0 187000 0.000246913580 0.651241359569 0.444577243757 0.200000000000
+chr1 4675000 4676000 Sox17 810.0 188000 0.000493827160 0.647869186187 0.879644813784 0.400000000000
+chr1 4676000 4677000 Sox17 810.0 189000 0.000246913580 0.671654971880 0.478179012441 0.200000000000
+chr1 4677000 4678000 Sox17 810.0 190000 0.000246913580 0.671941112135 0.480975380957 0.200000000000
+chr1 4678000 4679000 Sox17 810.0 191000 0.000740740741 0.658749839996 1.370779835192 0.600000000000
+chr1 4679000 4680000 Sox17 810.0 192000 0.000740740741 0.655383997647 1.355716320410 0.600000000000
+chr1 4680000 4681000 Sox17 810.0 193000 0.000740740741 0.676994533785 1.468692681340 0.600000000000
+chr1 4681000 4682000 Sox17 810.0 194000 0.000740740741 0.669325066593 1.426244915656 0.600000000000
+chr1 4682000 4683000 Sox17 810.0 195000 0.000740740741 0.685162890895 1.513744604449 0.600000000000
+chr1 4683000 4684000 Sox17 810.0 196000 0.000493827160 0.685254654751 1.009163069632 0.400000000000
+chr1 4684000 4685000 Sox17 810.0 197000 0.000493827160 0.664789163653 0.934622615061 0.400000000000
+chr1 4685000 4686000 Sox17 810.0 198000 0.000246913580 0.623323575813 0.403170540070 0.200000000000
+chr1 4686000 4687000 Sox17 810.0 199000 0.000308641975 0.643728679260 0.538264332961 0.250000000000
+chr1 4687000 4688000 Sox17 810.0 200000 0.000411522634 0.637624930855 0.699377466512 0.333333333333
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,405 @@
+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3
+# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw
+#
+chr1 14100000 14101000 Eya1 832.0 -200000 0.000400641026 0.880044890460 2.426424093120 0.333333333333
+chr1 14101000 14102000 Eya1 832.0 -199000 0.000300480769 0.852151439574 1.429857059822 0.250000000000
+chr1 14102000 14103000 Eya1 832.0 -198000 0.000240384615 0.820756603944 0.931069711724 0.200000000000
+chr1 14103000 14104000 Eya1 832.0 -197000 0.000240384615 0.814190727178 0.889688835341 0.200000000000
+chr1 14104000 14105000 Eya1 832.0 -196000 0.000240384615 0.827190062074 0.976487746811 0.200000000000
+chr1 14105000 14106000 Eya1 832.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000
+chr1 14106000 14107000 Eya1 832.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000
+chr1 14107000 14108000 Eya1 832.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000
+chr1 14108000 14109000 Eya1 832.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000
+chr1 14109000 14110000 Eya1 832.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000
+chr1 14110000 14111000 Eya1 832.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000
+chr1 14111000 14112000 Eya1 832.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000
+chr1 14112000 14113000 Eya1 832.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000
+chr1 14113000 14114000 Eya1 832.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000
+chr1 14114000 14115000 Eya1 832.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000
+chr1 14115000 14116000 Eya1 832.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000
+chr1 14116000 14117000 Eya1 832.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000
+chr1 14117000 14118000 Eya1 832.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000
+chr1 14118000 14119000 Eya1 832.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000
+chr1 14119000 14120000 Eya1 832.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000
+chr1 14120000 14121000 Eya1 832.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000
+chr1 14121000 14122000 Eya1 832.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000
+chr1 14122000 14123000 Eya1 832.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000
+chr1 14123000 14124000 Eya1 832.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000
+chr1 14124000 14125000 Eya1 832.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000
+chr1 14125000 14126000 Eya1 832.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000
+chr1 14126000 14127000 Eya1 832.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000
+chr1 14127000 14128000 Eya1 832.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000
+chr1 14128000 14129000 Eya1 832.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000
+chr1 14129000 14130000 Eya1 832.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000
+chr1 14130000 14131000 Eya1 832.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000
+chr1 14131000 14132000 Eya1 832.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000
+chr1 14132000 14133000 Eya1 832.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000
+chr1 14133000 14134000 Eya1 832.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000
+chr1 14134000 14135000 Eya1 832.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000
+chr1 14135000 14136000 Eya1 832.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000
+chr1 14136000 14137000 Eya1 832.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000
+chr1 14137000 14138000 Eya1 832.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000
+chr1 14138000 14139000 Eya1 832.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000
+chr1 14139000 14140000 Eya1 832.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000
+chr1 14140000 14141000 Eya1 832.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000
+chr1 14141000 14142000 Eya1 832.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000
+chr1 14142000 14143000 Eya1 832.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000
+chr1 14143000 14144000 Eya1 832.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000
+chr1 14144000 14145000 Eya1 832.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000
+chr1 14145000 14146000 Eya1 832.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000
+chr1 14146000 14147000 Eya1 832.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000
+chr1 14147000 14148000 Eya1 832.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000
+chr1 14148000 14149000 Eya1 832.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000
+chr1 14149000 14150000 Eya1 832.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000
+chr1 14150000 14151000 Eya1 832.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000
+chr1 14151000 14152000 Eya1 832.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000
+chr1 14152000 14153000 Eya1 832.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000
+chr1 14153000 14154000 Eya1 832.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000
+chr1 14154000 14155000 Eya1 832.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000
+chr1 14155000 14156000 Eya1 832.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000
+chr1 14156000 14157000 Eya1 832.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000
+chr1 14157000 14158000 Eya1 832.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000
+chr1 14158000 14159000 Eya1 832.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000
+chr1 14159000 14160000 Eya1 832.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000
+chr1 14160000 14161000 Eya1 832.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000
+chr1 14161000 14162000 Eya1 832.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000
+chr1 14162000 14163000 Eya1 832.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000
+chr1 14163000 14164000 Eya1 832.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000
+chr1 14164000 14165000 Eya1 832.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000
+chr1 14165000 14166000 Eya1 832.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000
+chr1 14166000 14167000 Eya1 832.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000
+chr1 14167000 14168000 Eya1 832.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000
+chr1 14168000 14169000 Eya1 832.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000
+chr1 14169000 14170000 Eya1 832.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000
+chr1 14170000 14171000 Eya1 832.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000
+chr1 14171000 14172000 Eya1 832.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000
+chr1 14172000 14173000 Eya1 832.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000
+chr1 14173000 14174000 Eya1 832.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000
+chr1 14174000 14175000 Eya1 832.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000
+chr1 14175000 14176000 Eya1 832.0 -125000 0.000000000000 0.789042220648 0.000000000000 0.000000000000
+chr1 14176000 14177000 Eya1 832.0 -124000 0.000000000000 0.798137256530 0.000000000000 0.000000000000
+chr1 14177000 14178000 Eya1 832.0 -123000 0.000000000000 0.785510253584 0.000000000000 0.000000000000
+chr1 14178000 14179000 Eya1 832.0 -122000 0.000000000000 0.799644194656 0.000000000000 0.000000000000
+chr1 14179000 14180000 Eya1 832.0 -121000 0.000000000000 0.790961581141 0.000000000000 0.000000000000
+chr1 14180000 14181000 Eya1 832.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000
+chr1 14181000 14182000 Eya1 832.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000
+chr1 14182000 14183000 Eya1 832.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000
+chr1 14183000 14184000 Eya1 832.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000
+chr1 14184000 14185000 Eya1 832.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000
+chr1 14185000 14186000 Eya1 832.0 -115000 0.000000000000 0.757379810911 0.000000000000 0.000000000000
+chr1 14186000 14187000 Eya1 832.0 -114000 0.000000000000 0.773895809279 0.000000000000 0.000000000000
+chr1 14187000 14188000 Eya1 832.0 -113000 0.000000000000 0.780251801078 0.000000000000 0.000000000000
+chr1 14188000 14189000 Eya1 832.0 -112000 0.000000000000 0.809192563048 0.000000000000 0.000000000000
+chr1 14189000 14190000 Eya1 832.0 -111000 0.000000000000 0.805959066383 0.000000000000 0.000000000000
+chr1 14190000 14191000 Eya1 832.0 -110000 0.000000000000 0.826154588365 0.000000000000 0.000000000000
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+chr1 14380000 14381000 Eya1 832.0 80000 0.000721153846 0.458578421689 0.630488151323 0.600000000000
+chr1 14381000 14382000 Eya1 832.0 81000 0.000721153846 0.452159184220 0.614363134542 0.600000000000
+chr1 14382000 14383000 Eya1 832.0 82000 0.001442307692 0.531662545053 1.241426282299 1.200000000000
+chr1 14383000 14384000 Eya1 832.0 83000 0.001201923077 0.544539152402 0.905791800808 1.000000000000
+chr1 14384000 14385000 Eya1 832.0 84000 0.000721153846 0.431883914707 0.511097841780 0.600000000000
+chr1 14385000 14386000 Eya1 832.0 85000 0.000961538462 0.408620507080 0.680016944466 0.800000000000
+chr1 14386000 14387000 Eya1 832.0 86000 0.001682692308 0.578356261020 1.306536052373 1.400000000000
+chr1 14387000 14388000 Eya1 832.0 87000 0.000961538462 0.383191453565 0.711751068273 0.800000000000
+chr1 14388000 14389000 Eya1 832.0 88000 0.000961538462 0.391467791454 0.707037485005 0.800000000000
+chr1 14389000 14390000 Eya1 832.0 89000 0.001201923077 0.597641299244 0.976487746018 1.000000000000
+chr1 14390000 14391000 Eya1 832.0 90000 0.001201923077 0.577027626513 0.983685444445 1.000000000000
+chr1 14391000 14392000 Eya1 832.0 91000 0.000721153846 0.415388228662 0.566547135970 0.600000000000
+chr1 14392000 14393000 Eya1 832.0 92000 0.000721153846 0.457521466073 0.635492025580 0.600000000000
+chr1 14393000 14394000 Eya1 832.0 93000 0.000961538462 0.481878108523 0.879912034881 0.800000000000
+chr1 14394000 14395000 Eya1 832.0 94000 0.000961538462 0.485654072445 0.806770732420 0.800000000000
+chr1 14395000 14396000 Eya1 832.0 95000 0.000721153846 0.470520014646 0.580231849042 0.600000000000
+chr1 14396000 14397000 Eya1 832.0 96000 0.000721153846 0.451356425790 0.563887290240 0.600000000000
+chr1 14397000 14398000 Eya1 832.0 97000 0.000721153846 0.458000704387 0.584467118044 0.600000000000
+chr1 14398000 14399000 Eya1 832.0 98000 0.000480769231 0.454705613751 0.380389525993 0.400000000000
+chr1 14399000 14400000 Eya1 832.0 99000 0.000240384615 0.466062200428 0.204265293878 0.200000000000
+chr1 14400000 14401000 Eya1 832.0 100000 0.000721153846 0.485559847885 0.684376027315 0.600000000000
+chr1 14401000 14402000 Eya1 832.0 101000 0.000480769231 0.476647654186 0.488243872910 0.400000000000
+chr1 14402000 14403000 Eya1 832.0 102000 0.000721153846 0.458905220217 0.712807079120 0.600000000000
+chr1 14403000 14404000 Eya1 832.0 103000 0.000721153846 0.494251471435 0.787593395411 0.600000000000
+chr1 14404000 14405000 Eya1 832.0 104000 0.000961538462 0.496762683299 1.000899939643 0.800000000000
+chr1 14405000 14406000 Eya1 832.0 105000 0.000961538462 0.490944103656 0.958946050621 0.800000000000
+chr1 14406000 14407000 Eya1 832.0 106000 0.001201923077 0.494608472741 1.170643204852 1.000000000000
+chr1 14407000 14408000 Eya1 832.0 107000 0.000961538462 0.500850258886 0.899685339184 0.800000000000
+chr1 14408000 14409000 Eya1 832.0 108000 0.001201923077 0.503477555567 1.096876646200 1.000000000000
+chr1 14409000 14410000 Eya1 832.0 109000 0.000961538462 0.499669178563 0.909909036298 0.800000000000
+chr1 14410000 14411000 Eya1 832.0 110000 0.000480769231 0.503445250814 0.471011736562 0.400000000000
+chr1 14411000 14412000 Eya1 832.0 111000 0.000480769231 0.472832134979 0.446083538620 0.400000000000
+chr1 14412000 14413000 Eya1 832.0 112000 0.000480769231 0.479967223270 0.457554258272 0.400000000000
+chr1 14413000 14414000 Eya1 832.0 113000 0.000240384615 0.490923249210 0.234815235231 0.200000000000
+chr1 14414000 14415000 Eya1 832.0 114000 0.000480769231 0.453380733495 0.462843902917 0.400000000000
+chr1 14415000 14416000 Eya1 832.0 115000 0.000480769231 0.469666167625 0.466892100350 0.400000000000
+chr1 14416000 14417000 Eya1 832.0 116000 0.000240384615 0.505935664500 0.268697970519 0.200000000000
+chr1 14417000 14418000 Eya1 832.0 117000 0.000240384615 0.523376482067 0.274219161738 0.200000000000
+chr1 14418000 14419000 Eya1 832.0 118000 0.000480769231 0.529451256365 0.556055522474 0.400000000000
+chr1 14419000 14420000 Eya1 832.0 119000 0.000240384615 0.533356831096 0.271430492274 0.200000000000
+chr1 14420000 14421000 Eya1 832.0 120000 0.000480769231 0.516584121708 0.535598630183 0.400000000000
+chr1 14421000 14422000 Eya1 832.0 121000 0.000480769231 0.535771528777 0.526789442119 0.400000000000
+chr1 14422000 14423000 Eya1 832.0 122000 0.000480769231 0.530490537983 0.541026994721 0.400000000000
+chr1 14423000 14424000 Eya1 832.0 123000 0.000240384615 0.530562527645 0.276110328386 0.200000000000
+chr1 14424000 14425000 Eya1 832.0 124000 0.000480769231 0.545553903451 0.586608023254 0.400000000000
+chr1 14425000 14426000 Eya1 832.0 125000 0.000240384615 0.564891705893 0.320287980913 0.200000000000
+chr1 14426000 14427000 Eya1 832.0 126000 0.001682692308 0.459648553557 2.091432710060 1.400000000000
+chr1 14427000 14428000 Eya1 832.0 127000 0.001923076923 0.455089832644 2.444946418284 1.600000000000
+chr1 14428000 14429000 Eya1 832.0 128000 0.001923076923 0.440214033666 2.562303847300 1.600000000000
+chr1 14429000 14430000 Eya1 832.0 129000 0.001682692308 0.449296940099 2.164107978537 1.400000000000
+chr1 14430000 14431000 Eya1 832.0 130000 0.002403846154 0.144092517424 2.890685746055 2.000000000000
+chr1 14431000 14432000 Eya1 832.0 131000 0.001201923077 0.438180156291 1.570039121874 1.000000000000
+chr1 14432000 14433000 Eya1 832.0 132000 0.000961538462 0.585853557394 1.286297112140 0.800000000000
+chr1 14433000 14434000 Eya1 832.0 133000 0.000961538462 0.595436468036 1.160463698084 0.800000000000
+chr1 14434000 14435000 Eya1 832.0 134000 0.001442307692 0.396906108679 1.812950834534 1.200000000000
+chr1 14435000 14436000 Eya1 832.0 135000 0.000721153846 0.604088556070 0.949470299058 0.600000000000
+chr1 14436000 14437000 Eya1 832.0 136000 0.000480769231 0.588739365234 0.580231849042 0.400000000000
+chr1 14437000 14438000 Eya1 832.0 137000 0.000480769231 0.567698248117 0.541026994721 0.400000000000
+chr1 14438000 14439000 Eya1 832.0 138000 0.000480769231 0.545110967143 0.602045076614 0.400000000000
+chr1 14439000 14440000 Eya1 832.0 139000 0.000000000000 0.585442994010 0.000000000000 0.000000000000
+chr1 14440000 14441000 Eya1 832.0 140000 0.000000000000 0.584686184662 0.000000000000 0.000000000000
+chr1 14441000 14442000 Eya1 832.0 141000 0.000000000000 0.604143773708 0.000000000000 0.000000000000
+chr1 14442000 14443000 Eya1 832.0 142000 0.000000000000 0.632888736121 0.000000000000 0.000000000000
+chr1 14443000 14444000 Eya1 832.0 143000 0.000000000000 0.631972051038 0.000000000000 0.000000000000
+chr1 14444000 14445000 Eya1 832.0 144000 0.000240384615 0.630242651353 0.330876012971 0.200000000000
+chr1 14445000 14446000 Eya1 832.0 145000 0.000961538462 0.654163481416 1.601439905096 0.800000000000
+chr1 14446000 14447000 Eya1 832.0 146000 0.000961538462 0.637809455886 1.475981478388 0.800000000000
+chr1 14447000 14448000 Eya1 832.0 147000 0.001442307692 0.378530224066 2.107157767708 1.200000000000
+chr1 14448000 14449000 Eya1 832.0 148000 0.001682692308 0.391170085460 2.547745301633 1.400000000000
+chr1 14449000 14450000 Eya1 832.0 149000 0.002163461538 0.388900495210 3.367513817293 1.800000000000
+chr1 14450000 14451000 Eya1 832.0 150000 0.002163461538 0.405292069313 3.133251984828 1.800000000000
+chr1 14451000 14452000 Eya1 832.0 151000 0.002163461538 0.394934687243 3.305724572467 1.800000000000
+chr1 14452000 14453000 Eya1 832.0 152000 0.002163461538 0.406285280003 3.202879807229 1.800000000000
+chr1 14453000 14454000 Eya1 832.0 153000 0.001923076923 0.403579514801 2.872537943893 1.600000000000
+chr1 14454000 14455000 Eya1 832.0 154000 0.001201923077 0.393839975386 1.828127744223 1.000000000000
+chr1 14455000 14456000 Eya1 832.0 155000 0.000480769231 0.609612095406 0.708601727240 0.400000000000
+chr1 14456000 14457000 Eya1 832.0 156000 0.000721153846 0.613314445827 1.062902590860 0.600000000000
+chr1 14457000 14458000 Eya1 832.0 157000 0.000240384615 0.602751520183 0.332248942495 0.200000000000
+chr1 14458000 14459000 Eya1 832.0 158000 0.000721153846 0.585293824856 0.960863942738 0.600000000000
+chr1 14459000 14460000 Eya1 832.0 159000 0.000721153846 0.573814787091 0.934692551098 0.600000000000
+chr1 14460000 14461000 Eya1 832.0 160000 0.001682692308 0.440899507752 2.147524775510 1.400000000000
+chr1 14461000 14462000 Eya1 832.0 161000 0.001923076923 0.466493114575 2.312548596844 1.600000000000
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+chr1 14463000 14464000 Eya1 832.0 163000 0.001682692308 0.406268726703 2.325742597467 1.400000000000
+chr1 14464000 14465000 Eya1 832.0 164000 0.001682692308 0.395075253578 2.426424095919 1.400000000000
+chr1 14465000 14466000 Eya1 832.0 165000 0.000721153846 0.620870359018 1.106986108791 0.600000000000
+chr1 14466000 14467000 Eya1 832.0 166000 0.000240384615 0.653063136379 0.400359976274 0.200000000000
+chr1 14467000 14468000 Eya1 832.0 167000 0.000000000000 0.616215444951 0.000000000000 0.000000000000
+chr1 14468000 14469000 Eya1 832.0 168000 0.000000000000 0.616137376589 0.000000000000 0.000000000000
+chr1 14469000 14470000 Eya1 832.0 169000 0.000000000000 0.600847921629 0.000000000000 0.000000000000
+chr1 14470000 14471000 Eya1 832.0 170000 0.000000000000 0.585658029501 0.000000000000 0.000000000000
+chr1 14471000 14472000 Eya1 832.0 171000 0.000480769231 0.601961893812 0.659028767461 0.400000000000
+chr1 14472000 14473000 Eya1 832.0 172000 0.000480769231 0.591031149544 0.618316565296 0.400000000000
+chr1 14473000 14474000 Eya1 832.0 173000 0.000480769231 0.574110012150 0.630488151323 0.400000000000
+chr1 14474000 14475000 Eya1 832.0 174000 0.000480769231 0.594064541193 0.667266626197 0.400000000000
+chr1 14475000 14476000 Eya1 832.0 175000 0.000480769231 0.586742846341 0.690275820369 0.400000000000
+chr1 14476000 14477000 Eya1 832.0 176000 0.000240384615 0.580281241496 0.340731894279 0.200000000000
+chr1 14477000 14478000 Eya1 832.0 177000 0.000480769231 0.600664600573 0.727927229038 0.400000000000
+chr1 14478000 14479000 Eya1 832.0 178000 0.000480769231 0.611923543314 0.755396181293 0.400000000000
+chr1 14479000 14480000 Eya1 832.0 179000 0.000480769231 0.616982108456 0.769923031050 0.400000000000
+chr1 14480000 14481000 Eya1 832.0 180000 0.000480769231 0.632990312064 0.812913656138 0.400000000000
+chr1 14481000 14482000 Eya1 832.0 181000 0.000240384615 0.637219432588 0.408530587410 0.200000000000
+chr1 14482000 14483000 Eya1 832.0 182000 0.000000000000 0.649572741436 0.000000000000 0.000000000000
+chr1 14483000 14484000 Eya1 832.0 183000 0.000000000000 0.640768493097 0.000000000000 0.000000000000
+chr1 14484000 14485000 Eya1 832.0 184000 0.000240384615 0.624583606023 0.390595098725 0.200000000000
+chr1 14485000 14486000 Eya1 832.0 185000 0.000961538462 0.617559413959 1.539846062099 0.800000000000
+chr1 14486000 14487000 Eya1 832.0 186000 0.000961538462 0.647906480781 1.703659471393 0.800000000000
+chr1 14487000 14488000 Eya1 832.0 187000 0.000961538462 0.651241359569 1.731286381939 0.800000000000
+chr1 14488000 14489000 Eya1 832.0 188000 0.001201923077 0.352130813813 2.140962437394 1.000000000000
+chr1 14489000 14490000 Eya1 832.0 189000 0.001442307692 0.328345028120 2.793209135173 1.200000000000
+chr1 14490000 14491000 Eya1 832.0 190000 0.000721153846 0.671941112135 1.404771845823 0.600000000000
+chr1 14491000 14492000 Eya1 832.0 191000 0.001442307692 0.341250160004 2.669066506024 1.200000000000
+chr1 14492000 14493000 Eya1 832.0 192000 0.002403846154 0.068166431915 4.399560174407 2.000000000000
+chr1 14493000 14494000 Eya1 832.0 193000 0.002163461538 0.323005466215 4.289571172663 1.800000000000
+chr1 14494000 14495000 Eya1 832.0 194000 0.001682692308 0.330674933407 3.239907320421 1.400000000000
+chr1 14495000 14496000 Eya1 832.0 195000 0.002163461538 0.314837109105 4.421153111551 1.800000000000
+chr1 14496000 14497000 Eya1 832.0 196000 0.001682692308 0.314745345249 3.438674642317 1.400000000000
+chr1 14497000 14498000 Eya1 832.0 197000 0.001442307692 0.335210836347 2.729727108893 1.200000000000
+chr1 14498000 14499000 Eya1 832.0 198000 0.002644230769 0.083110512066 4.317607586564 2.200000000000
+chr1 14499000 14500000 Eya1 832.0 199000 0.003305288462 0.073447408129 5.764345200343 2.750000000000
+chr1 14500000 14501000 Eya1 832.0 200000 0.003605769231 1.000000000000 6.127958811148 3.000000000000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,405 @@
+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3
+# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw
+#
+chr1 18893000 18894000 Tfap2d 800.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000
+chr1 18894000 18895000 Tfap2d 800.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000
+chr1 18895000 18896000 Tfap2d 800.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000
+chr1 18896000 18897000 Tfap2d 800.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000
+chr1 18897000 18898000 Tfap2d 800.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000
+chr1 18898000 18899000 Tfap2d 800.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000
+chr1 18899000 18900000 Tfap2d 800.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000
+chr1 18900000 18901000 Tfap2d 800.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000
+chr1 18901000 18902000 Tfap2d 800.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000
+chr1 18902000 18903000 Tfap2d 800.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000
+chr1 18903000 18904000 Tfap2d 800.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000
+chr1 18904000 18905000 Tfap2d 800.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000
+chr1 18905000 18906000 Tfap2d 800.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000
+chr1 18906000 18907000 Tfap2d 800.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000
+chr1 18907000 18908000 Tfap2d 800.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000
+chr1 18908000 18909000 Tfap2d 800.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000
+chr1 18909000 18910000 Tfap2d 800.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000
+chr1 18910000 18911000 Tfap2d 800.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000
+chr1 18911000 18912000 Tfap2d 800.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000
+chr1 18912000 18913000 Tfap2d 800.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000
+chr1 18913000 18914000 Tfap2d 800.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000
+chr1 18914000 18915000 Tfap2d 800.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000
+chr1 18915000 18916000 Tfap2d 800.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000
+chr1 18916000 18917000 Tfap2d 800.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000
+chr1 18917000 18918000 Tfap2d 800.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000
+chr1 18918000 18919000 Tfap2d 800.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000
+chr1 18919000 18920000 Tfap2d 800.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000
+chr1 18920000 18921000 Tfap2d 800.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000
+chr1 18921000 18922000 Tfap2d 800.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000
+chr1 18922000 18923000 Tfap2d 800.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000
+chr1 18923000 18924000 Tfap2d 800.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000
+chr1 18924000 18925000 Tfap2d 800.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000
+chr1 18925000 18926000 Tfap2d 800.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000
+chr1 18926000 18927000 Tfap2d 800.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000
+chr1 18927000 18928000 Tfap2d 800.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000
+chr1 18928000 18929000 Tfap2d 800.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000
+chr1 18929000 18930000 Tfap2d 800.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000
+chr1 18930000 18931000 Tfap2d 800.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000
+chr1 18931000 18932000 Tfap2d 800.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000
+chr1 18932000 18933000 Tfap2d 800.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000
+chr1 18933000 18934000 Tfap2d 800.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000
+chr1 18934000 18935000 Tfap2d 800.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000
+chr1 18935000 18936000 Tfap2d 800.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000
+chr1 18936000 18937000 Tfap2d 800.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000
+chr1 18937000 18938000 Tfap2d 800.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000
+chr1 18938000 18939000 Tfap2d 800.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000
+chr1 18939000 18940000 Tfap2d 800.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000
+chr1 18940000 18941000 Tfap2d 800.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000
+chr1 18941000 18942000 Tfap2d 800.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000
+chr1 18942000 18943000 Tfap2d 800.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000
+chr1 18943000 18944000 Tfap2d 800.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000
+chr1 18944000 18945000 Tfap2d 800.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000
+chr1 18945000 18946000 Tfap2d 800.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000
+chr1 18946000 18947000 Tfap2d 800.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000
+chr1 18947000 18948000 Tfap2d 800.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000
+chr1 18948000 18949000 Tfap2d 800.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000
+chr1 18949000 18950000 Tfap2d 800.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000
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+chr1 19142000 19143000 Tfap2d 800.0 49000 0.001000000000 0.413849789054 0.617995361700 0.800000000000
+chr1 19143000 19144000 Tfap2d 800.0 50000 0.000500000000 0.397832458678 0.309572025986 0.400000000000
+chr1 19144000 19145000 Tfap2d 800.0 51000 0.001000000000 0.392072772958 0.627306026353 0.800000000000
+chr1 19145000 19146000 Tfap2d 800.0 52000 0.001000000000 0.387795524924 0.613442909647 0.800000000000
+chr1 19146000 19147000 Tfap2d 800.0 53000 0.001000000000 0.381647233130 0.641810212045 0.800000000000
+chr1 19147000 19148000 Tfap2d 800.0 54000 0.000750000000 0.386115535443 0.523741352272 0.600000000000
+chr1 19148000 19149000 Tfap2d 800.0 55000 0.001000000000 0.398615654765 0.708722340602 0.800000000000
+chr1 19149000 19150000 Tfap2d 800.0 56000 0.000500000000 0.398461693032 0.355875534288 0.400000000000
+chr1 19150000 19151000 Tfap2d 800.0 57000 0.000500000000 0.405640947317 0.365240679736 0.400000000000
+chr1 19151000 19152000 Tfap2d 800.0 58000 0.000750000000 0.405617224646 0.546662198984 0.600000000000
+chr1 19152000 19153000 Tfap2d 800.0 59000 0.000500000000 0.392564680967 0.361279284049 0.400000000000
+chr1 19153000 19154000 Tfap2d 800.0 60000 0.000250000000 0.393712331703 0.171700773197 0.200000000000
+chr1 19154000 19155000 Tfap2d 800.0 61000 0.000500000000 0.397980382520 0.352113636434 0.400000000000
+chr1 19155000 19156000 Tfap2d 800.0 62000 0.000500000000 0.410248598681 0.376809389136 0.400000000000
+chr1 19156000 19157000 Tfap2d 800.0 63000 0.000250000000 0.408005877354 0.183829746101 0.200000000000
+chr1 19157000 19158000 Tfap2d 800.0 64000 0.000250000000 0.397037837476 0.184644955624 0.200000000000
+chr1 19158000 19159000 Tfap2d 800.0 65000 0.001000000000 0.397682630681 0.780092506053 0.800000000000
+chr1 19159000 19160000 Tfap2d 800.0 66000 0.000750000000 0.438277764764 0.640575961628 0.600000000000
+chr1 19160000 19161000 Tfap2d 800.0 67000 0.000750000000 0.432439117014 0.612315257231 0.600000000000
+chr1 19161000 19162000 Tfap2d 800.0 68000 0.001000000000 0.452734978904 0.830672069766 0.800000000000
+chr1 19162000 19163000 Tfap2d 800.0 69000 0.001000000000 0.465980642540 0.822467901115 0.800000000000
+chr1 19163000 19164000 Tfap2d 800.0 70000 0.000500000000 0.444796187147 0.403268159690 0.400000000000
+chr1 19164000 19165000 Tfap2d 800.0 71000 0.000750000000 0.428059180779 0.585069379540 0.600000000000
+chr1 19165000 19166000 Tfap2d 800.0 72000 0.001000000000 0.412214629831 0.796888755682 0.800000000000
+chr1 19166000 19167000 Tfap2d 800.0 73000 0.000750000000 0.409759647919 0.618377784575 0.600000000000
+chr1 19167000 19168000 Tfap2d 800.0 74000 0.001000000000 0.393442654531 0.793094047924 0.800000000000
+chr1 19168000 19169000 Tfap2d 800.0 75000 0.000750000000 0.408748776277 0.579639501265 0.600000000000
+chr1 19169000 19170000 Tfap2d 800.0 76000 0.001000000000 0.414669054354 0.767510368762 0.800000000000
+chr1 19170000 19171000 Tfap2d 800.0 77000 0.001500000000 0.579559961145 1.115288504340 1.200000000000
+chr1 19171000 19172000 Tfap2d 800.0 78000 0.001500000000 0.576764611871 1.227639434667 1.200000000000
+chr1 19172000 19173000 Tfap2d 800.0 79000 0.001250000000 0.575231702614 1.038340087208 1.000000000000
+chr1 19173000 19174000 Tfap2d 800.0 80000 0.001250000000 0.541421578311 1.092846128960 1.000000000000
+chr1 19174000 19175000 Tfap2d 800.0 81000 0.000750000000 0.452159184220 0.638937659923 0.600000000000
+chr1 19175000 19176000 Tfap2d 800.0 82000 0.000500000000 0.468337454947 0.430361111197 0.400000000000
+chr1 19176000 19177000 Tfap2d 800.0 83000 0.000750000000 0.455460847598 0.565214083704 0.600000000000
+chr1 19177000 19178000 Tfap2d 800.0 84000 0.000750000000 0.431883914707 0.531541755451 0.600000000000
+chr1 19178000 19179000 Tfap2d 800.0 85000 0.001000000000 0.408620507080 0.707217622245 0.800000000000
+chr1 19179000 19180000 Tfap2d 800.0 86000 0.001250000000 0.578356261020 0.970569638906 1.000000000000
+chr1 19180000 19181000 Tfap2d 800.0 87000 0.001500000000 0.616808546435 1.110331666506 1.200000000000
+chr1 19181000 19182000 Tfap2d 800.0 88000 0.001750000000 0.608532208546 1.286808222709 1.400000000000
+chr1 19182000 19183000 Tfap2d 800.0 89000 0.002000000000 0.597641299244 1.624875609374 1.600000000000
+chr1 19183000 19184000 Tfap2d 800.0 90000 0.002250000000 0.577027626513 1.841459152001 1.800000000000
+chr1 19184000 19185000 Tfap2d 800.0 91000 0.002000000000 0.584611771338 1.571224057089 1.600000000000
+chr1 19185000 19186000 Tfap2d 800.0 92000 0.001250000000 0.542478533927 1.101519511005 1.000000000000
+chr1 19186000 19187000 Tfap2d 800.0 93000 0.000750000000 0.481878108523 0.686331387207 0.600000000000
+chr1 19187000 19188000 Tfap2d 800.0 94000 0.000750000000 0.485654072445 0.629281171287 0.600000000000
+chr1 19188000 19189000 Tfap2d 800.0 95000 0.001500000000 0.529479985354 1.206882246008 1.200000000000
+chr1 19189000 19190000 Tfap2d 800.0 96000 0.002000000000 0.548643574210 1.563847418266 1.600000000000
+chr1 19190000 19191000 Tfap2d 800.0 97000 0.002000000000 0.541999295613 1.620922140709 1.600000000000
+chr1 19191000 19192000 Tfap2d 800.0 98000 0.002500000000 0.252583724415 1.978025535164 2.000000000000
+chr1 19192000 19193000 Tfap2d 800.0 99000 0.003250000000 0.233002344583 2.761666773237 2.600000000000
+chr1 19193000 19194000 Tfap2d 800.0 100000 0.002250000000 0.514440152115 2.135253205224 1.800000000000
+chr1 19194000 19195000 Tfap2d 800.0 101000 0.002250000000 0.523352345814 2.284981325218 1.800000000000
+chr1 19195000 19196000 Tfap2d 800.0 102000 0.004000000000 0.045854651653 3.953703265520 3.200000000000
+chr1 19196000 19197000 Tfap2d 800.0 103000 0.003500000000 0.159694099346 3.822453279063 2.800000000000
+chr1 19197000 19198000 Tfap2d 800.0 104000 0.004250000000 0.049529359141 4.423977733223 3.400000000000
+chr1 19198000 19199000 Tfap2d 800.0 105000 0.005250000000 0.015947371788 5.235845436391 4.200000000000
+chr1 19199000 19200000 Tfap2d 800.0 106000 0.004750000000 0.070039690421 4.626381945577 3.800000000000
+chr1 19200000 19201000 Tfap2d 800.0 107000 0.003000000000 0.206953239132 2.807018258254 2.400000000000
+chr1 19201000 19202000 Tfap2d 800.0 108000 0.003750000000 0.083451887861 3.422255136144 3.000000000000
+chr1 19202000 19203000 Tfap2d 800.0 109000 0.003250000000 0.203955947176 3.075492542686 2.600000000000
+chr1 19203000 19204000 Tfap2d 800.0 110000 0.002750000000 0.194755960323 2.694187133136 2.200000000000
+chr1 19204000 19205000 Tfap2d 800.0 111000 0.003750000000 0.070033494126 3.479451601239 3.000000000000
+chr1 19205000 19206000 Tfap2d 800.0 112000 0.003750000000 0.066008586110 3.568923214524 3.000000000000
+chr1 19206000 19207000 Tfap2d 800.0 113000 0.004000000000 0.063559023410 3.907325514242 3.200000000000
+chr1 19207000 19208000 Tfap2d 800.0 114000 0.003000000000 0.194024901725 2.888145954204 2.400000000000
+chr1 19208000 19209000 Tfap2d 800.0 115000 0.002250000000 0.530333832375 2.185055029640 1.800000000000
+chr1 19209000 19210000 Tfap2d 800.0 116000 0.002000000000 0.494064335500 2.235567114714 1.600000000000
+chr1 19210000 19211000 Tfap2d 800.0 117000 0.003250000000 0.153296595403 3.707443066693 2.600000000000
+chr1 19211000 19212000 Tfap2d 800.0 118000 0.002750000000 0.150599678767 3.180637588552 2.200000000000
+chr1 19212000 19213000 Tfap2d 800.0 119000 0.003000000000 0.158720896687 3.387452543582 2.400000000000
+chr1 19213000 19214000 Tfap2d 800.0 120000 0.003250000000 0.159014735445 3.620646740040 2.600000000000
+chr1 19214000 19215000 Tfap2d 800.0 121000 0.003250000000 0.167627083488 3.561096628728 2.600000000000
+chr1 19215000 19216000 Tfap2d 800.0 122000 0.004000000000 0.045017271224 4.501344596082 3.200000000000
+chr1 19216000 19217000 Tfap2d 800.0 123000 0.003750000000 0.040341711770 4.307321122815 3.000000000000
+chr1 19217000 19218000 Tfap2d 800.0 124000 0.004500000000 0.033378495200 5.490651097659 3.600000000000
+chr1 19218000 19219000 Tfap2d 800.0 125000 0.004250000000 0.023700630057 5.662691502533 3.400000000000
+chr1 19219000 19220000 Tfap2d 800.0 126000 0.004250000000 0.026192447545 5.282361473408 3.400000000000
+chr1 19220000 19221000 Tfap2d 800.0 127000 0.003500000000 0.125432179010 4.449802481277 2.800000000000
+chr1 19221000 19222000 Tfap2d 800.0 128000 0.003250000000 0.116041209825 4.330293501937 2.600000000000
+chr1 19222000 19223000 Tfap2d 800.0 129000 0.002500000000 0.122047074614 3.215246139541 2.000000000000
+chr1 19223000 19224000 Tfap2d 800.0 130000 0.004500000000 0.038045805086 5.411363716616 3.600000000000
+chr1 19224000 19225000 Tfap2d 800.0 131000 0.003750000000 0.026250942062 4.898522060247 3.000000000000
+chr1 19225000 19226000 Tfap2d 800.0 132000 0.002750000000 0.124311097303 3.678809740720 2.200000000000
+chr1 19226000 19227000 Tfap2d 800.0 133000 0.003000000000 0.151641641426 3.620646738024 2.400000000000
+chr1 19227000 19228000 Tfap2d 800.0 134000 0.003250000000 0.143582745335 4.085182547149 2.600000000000
+chr1 19228000 19229000 Tfap2d 800.0 135000 0.002000000000 0.395911443930 2.633197629387 1.600000000000
+chr1 19229000 19230000 Tfap2d 800.0 136000 0.003250000000 0.150842735995 3.922367299526 2.600000000000
+chr1 19230000 19231000 Tfap2d 800.0 137000 0.003250000000 0.164772494749 3.657342484316 2.600000000000
+chr1 19231000 19232000 Tfap2d 800.0 138000 0.003500000000 0.130463229278 4.382888157748 2.800000000000
+chr1 19232000 19233000 Tfap2d 800.0 139000 0.003750000000 0.057301877416 4.398320860434 3.000000000000
+chr1 19233000 19234000 Tfap2d 800.0 140000 0.003500000000 0.179226643902 3.689393195582 2.800000000000
+chr1 19234000 19235000 Tfap2d 800.0 141000 0.002750000000 0.164399719481 3.126360496166 2.200000000000
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+chr1 19236000 19237000 Tfap2d 800.0 143000 0.002250000000 0.368027948962 2.725359544693 1.800000000000
+chr1 19237000 19238000 Tfap2d 800.0 144000 0.001250000000 0.369757348647 1.720555267451 1.000000000000
+chr1 19238000 19239000 Tfap2d 800.0 145000 0.000750000000 0.654163481416 1.249123125975 0.600000000000
+chr1 19239000 19240000 Tfap2d 800.0 146000 0.000500000000 0.637809455886 0.767510368762 0.400000000000
+chr1 19240000 19241000 Tfap2d 800.0 147000 0.000500000000 0.621469775934 0.730481359472 0.400000000000
+chr1 19241000 19242000 Tfap2d 800.0 148000 0.000750000000 0.608829914540 1.135566477299 0.600000000000
+chr1 19242000 19243000 Tfap2d 800.0 149000 0.001000000000 0.611099504790 1.556539719993 0.800000000000
+chr1 19243000 19244000 Tfap2d 800.0 150000 0.001000000000 0.594707930687 1.448258695209 0.800000000000
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+chr1 19246000 19247000 Tfap2d 800.0 153000 0.000750000000 0.596420485199 1.120289798118 0.600000000000
+chr1 19247000 19248000 Tfap2d 800.0 154000 0.000500000000 0.606160024614 0.760501141597 0.400000000000
+chr1 19248000 19249000 Tfap2d 800.0 155000 0.000500000000 0.609612095406 0.736945796329 0.400000000000
+chr1 19249000 19250000 Tfap2d 800.0 156000 0.000000000000 0.613314445827 0.000000000000 0.000000000000
+chr1 19250000 19251000 Tfap2d 800.0 157000 0.000250000000 0.602751520183 0.345538900195 0.200000000000
+chr1 19251000 19252000 Tfap2d 800.0 158000 0.000250000000 0.585293824856 0.333099500149 0.200000000000
+chr1 19252000 19253000 Tfap2d 800.0 159000 0.000250000000 0.573814787091 0.324026751047 0.200000000000
+chr1 19253000 19254000 Tfap2d 800.0 160000 0.000250000000 0.559100492248 0.319060823790 0.200000000000
+chr1 19254000 19255000 Tfap2d 800.0 161000 0.000250000000 0.533506885425 0.300631317590 0.200000000000
+chr1 19255000 19256000 Tfap2d 800.0 162000 0.000000000000 0.591476571829 0.000000000000 0.000000000000
+chr1 19256000 19257000 Tfap2d 800.0 163000 0.000000000000 0.593731273297 0.000000000000 0.000000000000
+chr1 19257000 19258000 Tfap2d 800.0 164000 0.000000000000 0.604924746422 0.000000000000 0.000000000000
+chr1 19258000 19259000 Tfap2d 800.0 165000 0.000250000000 0.620870359018 0.383755184381 0.200000000000
+chr1 19259000 19260000 Tfap2d 800.0 166000 0.000500000000 0.653063136379 0.832748750650 0.400000000000
+chr1 19260000 19261000 Tfap2d 800.0 167000 0.000750000000 0.616215444951 1.195333134476 0.600000000000
+chr1 19261000 19262000 Tfap2d 800.0 168000 0.000750000000 0.616137376589 1.161975000232 0.600000000000
+chr1 19262000 19263000 Tfap2d 800.0 169000 0.001000000000 0.600847921629 1.399577730324 0.800000000000
+chr1 19263000 19264000 Tfap2d 800.0 170000 0.000750000000 0.585658029501 1.015547256684 0.600000000000
+chr1 19264000 19265000 Tfap2d 800.0 171000 0.000750000000 0.601961893812 1.028084877240 0.600000000000
+chr1 19265000 19266000 Tfap2d 800.0 172000 0.000500000000 0.591031149544 0.643049227908 0.400000000000
+chr1 19266000 19267000 Tfap2d 800.0 173000 0.000750000000 0.574110012150 0.983561516064 0.600000000000
+chr1 19267000 19268000 Tfap2d 800.0 174000 0.000500000000 0.594064541193 0.693957291245 0.400000000000
+chr1 19268000 19269000 Tfap2d 800.0 175000 0.000750000000 0.586742846341 1.076830279776 0.600000000000
+chr1 19269000 19270000 Tfap2d 800.0 176000 0.000750000000 0.580281241496 1.063083510150 0.600000000000
+chr1 19270000 19271000 Tfap2d 800.0 177000 0.000750000000 0.600664600573 1.135566477299 0.600000000000
+chr1 19271000 19272000 Tfap2d 800.0 178000 0.000500000000 0.611923543314 0.785612028545 0.400000000000
+chr1 19272000 19273000 Tfap2d 800.0 179000 0.000500000000 0.616982108456 0.800719952292 0.400000000000
+chr1 19273000 19274000 Tfap2d 800.0 180000 0.000250000000 0.632990312064 0.422715101192 0.200000000000
+chr1 19274000 19275000 Tfap2d 800.0 181000 0.000000000000 0.637219432588 0.000000000000 0.000000000000
+chr1 19275000 19276000 Tfap2d 800.0 182000 0.000250000000 0.649572741436 0.447714381549 0.200000000000
+chr1 19276000 19277000 Tfap2d 800.0 183000 0.000250000000 0.640768493097 0.433723307028 0.200000000000
+chr1 19277000 19278000 Tfap2d 800.0 184000 0.000750000000 0.624583606023 1.218656708021 0.600000000000
+chr1 19278000 19279000 Tfap2d 800.0 185000 0.000750000000 0.617559413959 1.201079928437 0.600000000000
+chr1 19279000 19280000 Tfap2d 800.0 186000 0.000750000000 0.647906480781 1.328854387687 0.600000000000
+chr1 19280000 19281000 Tfap2d 800.0 187000 0.000500000000 0.651241359569 0.900268918608 0.400000000000
+chr1 19281000 19282000 Tfap2d 800.0 188000 0.000500000000 0.647869186187 0.890640373956 0.400000000000
+chr1 19282000 19283000 Tfap2d 800.0 189000 0.000000000000 0.671654971880 0.000000000000 0.000000000000
+chr1 19283000 19284000 Tfap2d 800.0 190000 0.000250000000 0.671941112135 0.486987573219 0.200000000000
+chr1 19284000 19285000 Tfap2d 800.0 191000 0.000250000000 0.658749839996 0.462638194377 0.200000000000
+chr1 19285000 19286000 Tfap2d 800.0 192000 0.000250000000 0.655383997647 0.457554258138 0.200000000000
+chr1 19286000 19287000 Tfap2d 800.0 193000 0.000500000000 0.676994533785 0.991367559904 0.400000000000
+chr1 19287000 19288000 Tfap2d 800.0 194000 0.000500000000 0.669325066593 0.962715318068 0.400000000000
+chr1 19288000 19289000 Tfap2d 800.0 195000 0.000250000000 0.685162890895 0.510888804001 0.200000000000
+chr1 19289000 19290000 Tfap2d 800.0 196000 0.000250000000 0.685254654751 0.510888804001 0.200000000000
+chr1 19290000 19291000 Tfap2d 800.0 197000 0.000250000000 0.664789163653 0.473152698875 0.200000000000
+chr1 19291000 19292000 Tfap2d 800.0 198000 0.000000000000 0.623323575813 0.000000000000 0.000000000000
+chr1 19292000 19293000 Tfap2d 800.0 199000 0.000000000000 0.643728679260 0.000000000000 0.000000000000
+chr1 19293000 19294000 Tfap2d 800.0 200000 0.000000000000 0.637624930855 0.000000000000 0.000000000000
diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,405 @@
+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3
+# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw
+#
+chr1 4287000 4288000 Sox17 978.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000
+chr1 4288000 4289000 Sox17 978.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000
+chr1 4289000 4290000 Sox17 978.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000
+chr1 4290000 4291000 Sox17 978.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000
+chr1 4291000 4292000 Sox17 978.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000
+chr1 4292000 4293000 Sox17 978.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000
+chr1 4293000 4294000 Sox17 978.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000
+chr1 4294000 4295000 Sox17 978.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000
+chr1 4295000 4296000 Sox17 978.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000
+chr1 4296000 4297000 Sox17 978.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000
+chr1 4297000 4298000 Sox17 978.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000
+chr1 4298000 4299000 Sox17 978.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000
+chr1 4299000 4300000 Sox17 978.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000
+chr1 4300000 4301000 Sox17 978.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000
+chr1 4301000 4302000 Sox17 978.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000
+chr1 4302000 4303000 Sox17 978.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000
+chr1 4303000 4304000 Sox17 978.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000
+chr1 4304000 4305000 Sox17 978.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000
+chr1 4305000 4306000 Sox17 978.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000
+chr1 4306000 4307000 Sox17 978.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000
+chr1 4307000 4308000 Sox17 978.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000
+chr1 4308000 4309000 Sox17 978.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000
+chr1 4309000 4310000 Sox17 978.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000
+chr1 4310000 4311000 Sox17 978.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000
+chr1 4311000 4312000 Sox17 978.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000
+chr1 4312000 4313000 Sox17 978.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000
+chr1 4313000 4314000 Sox17 978.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000
+chr1 4314000 4315000 Sox17 978.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000
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diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/referencePoints.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/referencePoints.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,43 @@
+chr1 4487435 4487435 Sox17
+chr1 14300280 14300280 Eya1
+chr1 19093103 19093103 Tfap2d
+chr1 19198995 19198995 Tfap2b
+chr1 24202042 24202042 Col9a1
+chr1 33776741 33776741 Rab23
+chr1 38684089 38684089 Aff3
+chr1 42753991 42753991 Pou3f3
+chr1 52176282 52176282 Stat1
+chr1 52557292 52557292 Nab1
+chr1 53118507 53118507 Mstn
+chr1 57028178 57028178 Satb2
+chr1 59821123 59821123 Bmpr2
+chr1 66991630 66991630 Myl1
+chr1 74648029 74648029 Stk36
+chr1 74818466 74818466 Wnt6
+chr1 74838593 74838593 Wnt10a
+chr1 74998246 74998246 Ihh
+chr1 75356867 75356867 Des
+chr1 77511663 77511663 Epha4
+chr1 78193711 78193711 Pax3
+chr1 89102386 89102386 Chrng
+chr1 93355905 93355905 Per2
+chr1 93698054 93698054 Twist2
+chr1 94076918 94076918 Hdac4
+chr1 107677300 107677300 Tnfrsf11a
+chr1 120950196 120950196 Gli2
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+chr1 135934092 135934092 Fmod
+chr1 136186581 136186581 MyoG
+chr1 152313295 152313295 Prg4
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+chr1 164147754 164147754 Dnm3os
+chr1 165243781 165243781 Prrx1
+chr1 165333772 165333772 Gorab
+chr1 169619689 169619689 Lmx1a
+chr1 170362300 170362300 Pbx1
+chr1 180249284 180249284 Gm16586
+chr1 182823250 182823250 Lefty2
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+chr1 188529871 188529871 Tgfb2
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diff -r 000000000000 -r bd11c6a972ef test-data/cHi-C/referencePoints_chicViewpoint.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/referencePoints_chicViewpoint.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,4 @@
+chr1 4487435 4487435 Sox17
+chr1 14300280 14300280 Eya1
+chr1 19093103 19093103 Tfap2d
+
diff -r 000000000000 -r bd11c6a972ef test-data/distVsCounts.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/distVsCounts.txt Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,600 @@
+ Matrix Chromosome Distance Contacts
+0 small_test_matrix_h5 all 0 0.09142620133910055
+1 small_test_matrix_h5 all 5000 0.07741782506891134
+2 small_test_matrix_h5 all 10000 0.04433044715929309
+3 small_test_matrix_h5 all 15000 0.03461983446557299
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diff -r 000000000000 -r bd11c6a972ef test-data/find_TADs/multiFDR_boundaries.bed
diff -r 000000000000 -r bd11c6a972ef test-data/find_TADs/multiFDR_boundaries.gff
diff -r 000000000000 -r bd11c6a972ef test-data/find_TADs/multiFDR_score.bedgraph
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/find_TADs/multiFDR_score.bedgraph Mon Dec 16 15:32:01 2019 -0500
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diff -r 000000000000 -r bd11c6a972ef test-data/find_TADs/multiFDR_zscore_matrix.h5
Binary file test-data/find_TADs/multiFDR_zscore_matrix.h5 has changed
diff -r 000000000000 -r bd11c6a972ef test-data/hicAggregateContacts/test_regions.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
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Binary file test-data/hicConvertFormat/small_test_matrix_chr4.homer has changed
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diff -r 000000000000 -r bd11c6a972ef test-data/hicFindRestrictionSites/reference_genome.fasta
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hicFindRestrictionSites/reference_genome.fasta Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,2 @@
+>chr1
+CTACGGTACGAACGTACGGTACGcgtaCGNAGTCATG
diff -r 000000000000 -r bd11c6a972ef test-data/hicFindRestrictionSites/restriction_sites.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hicFindRestrictionSites/restriction_sites.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,4 @@
+chr1 5 9 . 0 +
+chr1 13 17 . 0 +
+chr1 18 22 . 0 +
+chr1 24 28 . 0 +
diff -r 000000000000 -r bd11c6a972ef test-data/hicInfo/hicInfo_output.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hicInfo/hicInfo_output.txt Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,10 @@
+# Matrix information file. Created with HiCExplorer's hicInfo version 3.3
+File: matrix_name.h5
+Size: 33,754
+Bin_length: 5000
+Sum of matrix: 35778.0
+Chromosomes: chr2L, chr2LHet, chr2R, chr2RHet, chr3L, chr3LHet, chr3R, chr3RHet, chr4, chrM, chrUextra, chrU, chrX, chrXHet, chrYHet
+Non-zero elements: 69,213
+Minimum (non zero): 1
+Maximum: 8
+NaN bins: 0
diff -r 000000000000 -r bd11c6a972ef test-data/hicInfo_output.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hicInfo_output.txt Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,10 @@
+# Matrix information file. Created with HiCExplorer's hicInfo version 3.1
+File: matrix_name.h5
+Size: 3,383
+Bin_length: 50000
+Sum of matrix: 32798.5
+Chromosomes: chr2RHet, chr3RHet, chr2LHet, chr4, chrYHet, chr3L, chr2L, chrU, chrX, chrXHet, chr2R, chr3R, chrUextra, chrM, chr3LHet
+Non-zero elements: 45,981
+Minimum (non zero): 1
+Maximum: 68
+NaN bins: 664
\ No newline at end of file
diff -r 000000000000 -r bd11c6a972ef test-data/hicMergeLoops/gm12878_10kb.bedgraph
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hicMergeLoops/gm12878_10kb.bedgraph Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,1028 @@
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diff -r 000000000000 -r bd11c6a972ef test-data/hicMergeLoops/gm12878_25kb.bedgraph
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
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diff -r 000000000000 -r bd11c6a972ef test-data/hicMergeLoops/gm12878_5kb.bedgraph
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
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diff -r 000000000000 -r bd11c6a972ef test-data/hicMergeLoops/gm12878_all.bedgraph
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
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diff -r 000000000000 -r bd11c6a972ef test-data/hicPlotMatrix/plot3_pca.svg
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hicPlotMatrix/plot3_pca.svg Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,2781 @@
+
+
+
+
diff -r 000000000000 -r bd11c6a972ef test-data/hicPlotSVL/p_values.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hicPlotSVL/p_values.txt Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,4 @@
+# Created with HiCExplorer's hicPlotSVL 3.3
+# Short range vs long range contacts per chromosome, p-values of each distribution against each other distribution with Wilcoxon rank-sum
+# Short range contacts: <= 2000000
+0_small_test_matrix.h5 1_small_test_matrix.h5 1.0
diff -r 000000000000 -r bd11c6a972ef test-data/hicPlotSVL/plot.png
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diff -r 000000000000 -r bd11c6a972ef test-data/hicPlotSVL/ratios.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hicPlotSVL/ratios.txt Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,8 @@
+# Created with HiCExplorer's hicPlotSVL 3.3
+# Short range vs long range contacts per chromosome: raw data
+# Short range contacts: <= 2000000
+# 0_small_test_matrix.h5 1_small_test_matrix.h5
+# Chromosome Ratio Sum <= 2000000 Sum > 2000000 Ratio Sum <= 2000000 Sum > 2000000
+chr2L 4.7639676113360325 11767 2470 4.7639676113360325 11767 2470
+chr3L 4.8960869565217395 11261 2300 4.8960869565217395 11261 2300
+chr4
diff -r 000000000000 -r bd11c6a972ef test-data/hicQuickQC/QC.log
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hicQuickQC/QC.log Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,29 @@
+
+File /tmp/tmpp4d6khlj.h5
+Sequenced reads 983
+Min rest. site distance 300
+Max library insert size 1000
+
+# count (percentage w.r.t. total sequenced reads)
+Pairs mappable, unique and high quality 300 (30.52)
+Hi-C contacts 215 (21.87)
+One mate unmapped 506 (51.48)
+One mate not unique 13 (1.32)
+Low mapping quality 164 (16.68)
+
+# count (percentage w.r.t. mappable, unique and high quality pairs)
+dangling end 0 (0.00)
+self ligation (removed) 0 (0.00)
+One mate not close to rest site 0 (0.00)
+same fragment 85 (28.33)
+self circle 0 (0.00)
+duplicated pairs 0 (0.00)
+
+# count (percentage w.r.t. total valid pairs used)
+inter chromosomal 24 (11.16)
+Intra short range (< 20kb) 61 (28.37)
+Intra long range (>= 20kb) 130 (60.47)
+Read pair type: inward pairs 42 (19.53)
+Read pair type: outward pairs 66 (30.70)
+Read pair type: left pairs 48 (22.33)
+Read pair type: right pairs 35 (16.28)
diff -r 000000000000 -r bd11c6a972ef test-data/hicTransform/obs_exp_norm.h5
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diff -r 000000000000 -r bd11c6a972ef test-data/hicValidateLocations/GSM935376_hg19_Gm12878_Smc3.narrowPeak
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hicValidateLocations/GSM935376_hg19_Gm12878_Smc3.narrowPeak Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,5903 @@
+chr1 237570 237942 region_12575 0 +
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diff -r 000000000000 -r bd11c6a972ef test-data/hicValidateLocations/loops_1.bedgraph
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hicValidateLocations/loops_1.bedgraph Mon Dec 16 15:32:01 2019 -0500
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diff -r 000000000000 -r bd11c6a972ef test-data/hicValidateLocations/overlap_smc3_matched_locations
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
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diff -r 000000000000 -r bd11c6a972ef test-data/hicValidateLocations/overlap_smc3_statistics
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hicValidateLocations/overlap_smc3_statistics Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,7 @@
+# HiCExplorer hicValidateLocations 3.3
+# Overlap of loop file /tmp/tmpo82hqd2o/files/4/a/4/dataset_4a45db46-19b9-4b40-9d5b-d049a100e2aa.dat with protein file /tmp/tmpo82hqd2o/files/3/5/8/dataset_358b0ce7-ab08-46fc-8968-195d416429ca.dat
+#
+Protein peaks: 3097
+Matched Loops: 530
+Total Loops: 1007
+Loops match protein: 0.5263157894736842
diff -r 000000000000 -r bd11c6a972ef test-data/li_32-33mb_interactions.bedgraph
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/li_32-33mb_interactions.bedgraph Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,2 @@
+X 3139841 3367043 X 2851659 3139841 28764.634828529033
+X 3139841 3367043 X 3139841 3367043 139691.503741355060
diff -r 000000000000 -r bd11c6a972ef test-data/li_viewpoint_32-33Mb.png
Binary file test-data/li_viewpoint_32-33Mb.png has changed
diff -r 000000000000 -r bd11c6a972ef test-data/li_viewpoint_32Mb.png
Binary file test-data/li_viewpoint_32Mb.png has changed
diff -r 000000000000 -r bd11c6a972ef test-data/raw_qc_report
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/raw_qc_report Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,29 @@
+
+File matrix.cool
+Sequenced reads 983
+Min rest. site distance 300
+Max library insert size 1000
+
+# count (percentage w.r.t. total sequenced reads)
+Pairs mappable, unique and high quality 300 (30.52)
+Hi-C contacts 215 (21.87)
+One mate unmapped 506 (51.48)
+One mate not unique 13 (1.32)
+Low mapping quality 164 (16.68)
+
+# count (percentage w.r.t. mappable, unique and high quality pairs)
+dangling end 0 (0.00)
+self ligation (removed) 0 (0.00)
+One mate not close to rest site 0 (0.00)
+same fragment 85 (28.33)
+self circle 0 (0.00)
+duplicated pairs 0 (0.00)
+
+# count (percentage w.r.t. total valid pairs used)
+inter chromosomal 24 (11.16)
+Intra short range (< 20kb) 61 (28.37)
+Intra long range (>= 20kb) 130 (60.47)
+Read pair type: inward pairs 42 (19.53)
+Read pair type: outward pairs 66 (30.70)
+Read pair type: left pairs 48 (22.33)
+Read pair type: right pairs 35 (16.28)
diff -r 000000000000 -r bd11c6a972ef test-data/regions.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/regions.bed Mon Dec 16 15:32:01 2019 -0500
@@ -0,0 +1,2 @@
+chrX 10000000 15000000
+chrX 18000000 22000000
diff -r 000000000000 -r bd11c6a972ef test-data/small_test_matrix.cool
Binary file test-data/small_test_matrix.cool has changed
diff -r 000000000000 -r bd11c6a972ef test-data/small_test_matrix_result_sorted.bam
Binary file test-data/small_test_matrix_result_sorted.bam has changed