Mercurial > repos > bgruening > hicexplorer_hicaggregatecontacts

comparison test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed @ 6:f922a8d5e897 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
author bgruening
date Wed, 05 Feb 2020 19:45:52 -0500
parents ce16a538ab46
children
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5:ce16a538ab46 6:f922a8d5e897
1 # Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev 1 # Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
2 # This file contains the p-values computed by fisher test 2 # This file contains the p-values computed by fisher test
3 # To test the smoothed (float) values they were rounded up to the next integer 3 # To test the smoothed (float) values they were rounded up to the next integer
4 # 4 #
5 # Alpha level 0.5 5 # Alpha level 0.5
6 # Degrees of freedom 1 6 # Degrees of freedom 1
7 # 7 #
8 # FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 8 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
9 # MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 9 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
10 #Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value 10 #Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
11 chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.44082 11 chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.37830
12 chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00117 12 chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.12513
13 chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.16402
14 chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.37847
15 chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.46860
16 chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.30594