Mercurial > repos > bgruening > hicexplorer_hicaggregatecontacts

diff test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed @ 5:ce16a538ab46 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3b41d687ff30583540d055f6995de00530cca81d-dirty"
author bgruening
date Mon, 16 Dec 2019 15:27:02 -0500
parents
children f922a8d5e897
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed	Mon Dec 16 15:27:02 2019 -0500
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+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# This file contains the p-values computed by fisher test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool	chr1_19093103_19093103	18.89  Mbp	19.29  Mbp	Tfap2d	Sum of interactions in fixate range: 472.0
+# MB-E10-5_chr1.cool	chr1_19093103_19093103	18.89  Mbp	19.29  Mbp	Tfap2d	Sum of interactions in fixate range: 800.0
+#Chromosome	Start	End	Gene	Relative distance	sum of interactions 1	target_1 raw	sum of interactions 2	target_2 raw	p-value
+chr1	19077000	19114000	Tfap2d	20000	472.00000	344.80000	800.00000	527.80000		0.27744
+chr1	19125000	19129000	Tfap2d	35000	472.00000	7.80000	800.00000	8.80000		0.45206
+chr1	19134000	19139000	Tfap2d	45000	472.00000	8.40000	800.00000	11.20000		0.65094
+chr1	19141000	19238000	Tfap2d	144000	472.00000	47.40000	800.00000	163.00000		0.00005