comparison test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 16:6152fc6da3dc draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
author iuc
date Tue, 24 Mar 2020 13:59:34 -0400
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children 9edf8894a22d
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15:231687cac31b 16:6152fc6da3dc
1 # Created with chicQualityControl version 3.4.3
2 # QC report for matrices: 0_matrix.cool 1_matrix.cool
3 #Sparsity threshold for rejection: sparsity <= 0.05 are rejected.
4
5 Number of reference points: 43
6 Number of accepted reference points: 35
7 Number of rejected reference points: 8
8 Number of faulty reference points: 0
9
10
11 A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices.
12 It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends.
13 Please check the results of hicInfo to validate this for your data.