Mercurial > repos > bgruening > hicexplorer_hicbuildmatrix
changeset 13:4b85ea34afae draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3b41d687ff30583540d055f6995de00530cca81d-dirty"
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--- a/hicBuildMatrix.xml Mon Dec 16 10:33:21 2019 -0500 +++ b/hicBuildMatrix.xml Mon Dec 16 15:44:31 2019 -0500 @@ -11,7 +11,7 @@ mkdir ./QCfolder && mkdir $qc.files_path && - hicBuildMatrix + @BINARY@ --samFiles #for $repeat in $samFiles: @@ -25,7 +25,10 @@ #end if #if $restrictionCutFileBinSize_conditional.restrictionCutFileBinSize_selector == "optionBinSize": - --binSize $restrictionCutFileBinSize_conditional.binSize + --binSize + #for $repeat in $restrictionCutFileBinSize_conditional.binSizes + '${repeat.binSize}' + #end for #end if @@ -93,9 +96,10 @@ is too far away from the nearest restriction site." /> </when> <when value="optionBinSize"> - <param argument="--binSize" type="integer" value="" optional="true" label="Bin size in bp" - help="If used, the restriction cut places (if given) are used to only consider reads that are in the vicinity of the resctriction sites. - Otherwise all reads in the interval are considered. "/> + <repeat name='binSizes' title='Bin size in bp' min="1" help="If used, the restriction cut places (if given) are used to only consider reads that are in the vicinity of the resctriction sites. + Otherwise all reads in the interval are considered. Use multiple ones to create a mcool file."> + <param argument="--binSize" type="integer" value="" optional="true" label="Bin size in bp"/> + </repeat> </when> </conditional> @@ -158,12 +162,41 @@ </repeat> <conditional name="restrictionCutFileBinSize_conditional"> <param name="restrictionCutFileBinSize_selector" value="optionBinSize"/> - <param name="binSize" value="5000"/> + <repeat name='binSizes'> + <param name="binSize" value="5000"/> + </repeat> </conditional> <param name='outputFormat' value='h5'/> <param name='outBam_Boolean' value="True" /> <output name="outBam" file="small_test_matrix_result_sorted.bam" ftype="bam"/> - <output name="outFileName" file="small_test_matrix_2.h5" ftype="h5" compare="sim_size" delta="50000"/> + <output name="outFileName" ftype="h5"> + <assert_contents> + <has_h5_keys keys='intervals,matrix'/> + </assert_contents> + </output> + <output name="raw_qc" file='raw_qc_report' compare='diff' lines_diff='2'/> + </test> + <test> + <repeat name="samFiles"> + <param name="samFile" value="small_test_R1_unsorted.sam"/> + </repeat> + <repeat name="samFiles"> + <param name="samFile" value="small_test_R2_unsorted.sam"/> + </repeat> + <conditional name="restrictionCutFileBinSize_conditional"> + <param name="restrictionCutFileBinSize_selector" value="optionBinSize"/> + <repeat name='binSizes'> + <param name="binSize" value="5000"/> + </repeat> + </conditional> + <param name='outputFormat' value='cool'/> + <param name='outBam_Boolean' value="True" /> + <output name="outBam" file="small_test_matrix_result_sorted.bam" ftype="bam"/> + <output name="outFileName" ftype="cool"> + <assert_contents> + <has_h5_keys keys='bins,chroms,indexes,pixels'/> + </assert_contents> + </output> <output name="raw_qc" file='raw_qc_report' compare='diff' lines_diff='2'/> </test> </tests>
--- a/macros.xml Mon Dec 16 10:33:21 2019 -0500 +++ b/macros.xml Mon Dec 16 15:44:31 2019 -0500 @@ -1,6 +1,6 @@ <macros> <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> - <token name="@WRAPPER_VERSION@">2.1.4</token> + <token name="@WRAPPER_VERSION@">3.3.1</token> <token name="@USE_RANGE@"> #if $use_range.select_use_range == "yes_use_range": --range $range_min:$range_max @@ -15,6 +15,25 @@ <version_command>@BINARY@ --version</version_command> </xml> + <token name="@CHROMOSOME_LIST@"> + #if $chromosome_list: + #set $chromosomes = [] + #for $chrom in $chromosome_list: + #silent $chromosomes.append("'%s'" % $chrom.chromosomes) + #end for + #set $chromosome_string = ' '.join($chromosomes) + --chromosomes $chromosome_string + #end if + </token> + + <xml name="chromosome_list"> + <repeat name="chromosome_list" min="0" title="Chromosomes to include" help="Chromosomes to include in the analysis. If not set, all chromosomes are included."> + <param argument="--chromosomes" type="text" value="" > + <validator type="empty_field" /> + </param> + </repeat> + </xml> + <xml name="citations"> <citations> <citation type="doi">10.5281/zenodo.1133705</citation> @@ -114,6 +133,7 @@ <option value="brg">brg</option> <option value="jet">jet</option> <option value="afmhot">afmhot</option> + <option value="plasma">plasma</option> <option value="Accent_r">Accent reversed</option> <option value="Spectral_r">Spectral reversed</option> <option value="Set1_r">Set1 reversed</option> @@ -183,10 +203,10 @@ <option value="brg_r">brg reversed</option> <option value="jet_r">jet reversed</option> <option value="afmhot_r">afmhot reversed</option> + <option value="plasma_r">plasma reversed</option> </param> </xml> - <xml name="multiple_input_matrices"> <repeat name="input_files" title="Hi-C Matrix files" min="2"> <param name="matrix" type="data" format="h5,cool" @@ -202,19 +222,22 @@ #set $matrices = [] #set $mlabels = [] #for $counter, $i in enumerate($input_files): - ln -s $i.matrix #echo str($counter)+'_matrix'#; - #silent $matrices.append( '%s_matrix' % $counter ) + ln -s '$i.matrix' '${counter}_matrix.$i.matrix.ext'; + #silent $matrices.append( '\'%s_matrix.%s\'' % ($counter, $i.matrix.ext)) #if str($i.mlabel.value) != "": - #set $mlabels += ['"%s"' % ($i.mlabel.value)] + #set $mlabels += ['\'%s\'' % ($i.mlabel.value)] #else - #set $mlabels += ['"%s"' % ($i.matrix.name)] + #set $mlabels += ['\'%s\'' % ($i.matrix.name)] #end if #end for #set $mlabels = ' '.join($mlabels) #set $matrices = ' '.join($matrices) </token> + <token name="@ESCAPE_IDENTIFIER_FILE@"><![CDATA[re.sub('[^\s\w\-\.]', '_', str($file.element_identifier))]]></token> + <token name="@ESCAPE_IDENTIFIER_MATRIX@"><![CDATA[re.sub('[^\s\w\-\.]', '_', str($matrix.element_identifier))]]></token> + <token name="@ESCAPE_IDENTIFIER_M@"><![CDATA[re.sub('[^\s\w\-\.]', '_', str($m.element_identifier))]]></token> <xml name="region"> <param name="region" type="text" label="Region of the genome to limit the operation" @@ -330,6 +353,96 @@ <param name='matrix_h5_cooler_multiple' type="data" format="h5,cool" label="Matricies to compute on" multiple="true"/> </xml> + + + + <xml name='convertFormat_single_macro'> + <conditional name="inputFormat_conditional"> + <param name="inputFormat_selector" type="select" label="Choose input file type"> + <option value="optionCool" selected="True">cool</option> + <option value="optionH5">h5</option> + <!-- <option value="optionHic">hic</option> --> + <option value="optionHomer">Homer</option> + <option value="optionHicpro">HiCPro</option> + </param> + <when value="optionCool"> + <expand macro='matrix_h5_cooler_macro' /> + <param name='correctionName' type='text' label='Correction factors column name'/> + <param name='correctionDivision' type="boolean" truevalue="yes" falsevalue="" label='Apply correction factors with a division instead multiplication'/> + <param name='chromosome' type='text' label='Load only one chromosome'/> + <param name='loadRawValues' type="boolean" truevalue="yes" falsevalue="" label='Load raw data'/> + + </when> + <when value="optionH5"> + <expand macro='matrix_h5_cooler_macro' /> + </when> + <!-- <when value="optionHic"> + <param name='matrixHic' type='data' format='binary' label='.hic matrix'/> + <param name='resolutions' type='text' label='List of resolutions'/> + </when> --> + + <when value="optionHomer"> + <param name='matrixHomer' type='data' format='txt' label='Homer interaction matrix'/> + </when> + + <when value="optionHicpro"> + <param name='matrixHicpro' type='data' format='txt' label='.hic matrix'/> + <param name='bedHicpro' type='data' format='bed' label='HicPro bed file'/> + </when> + </conditional> + </xml> + + <xml name='convertFormat_multiple_macro'> + <conditional name="inputFormat_conditional"> + <param name="inputFormat_selector" type="select" label="Choose input file type"> + <option value="optionCool" selected="True">cool</option> + <option value="optionH5">h5</option> + <option value="optionHomer">Homer</option> + <option value="optionHicpro">HiCPro</option> + </param> + <when value="optionCool"> + <expand macro='matrix_h5_cooler_multiple_macro' /> + <param name='correctionName' type='text' label='Correction factors column name'/> + <param name='correctionDivision' type="boolean" truevalue="yes" falsevalue="" label='Apply correction factors with a division instead multiplication'/> + <param name='chromosome' type='text' label='Load only one chromosome'/> + <param name='loadRawValues' type="boolean" truevalue="yes" falsevalue="" label='Load raw data'/> + + </when> + <when value="optionH5"> + <expand macro='matrix_h5_cooler_multiple_macro' /> + </when> + + <when value="optionHomer"> + <param name='matrixHomer' type='data' format='txt' label='Homer interaction matrix' multiple="true"/> + </when> + + <when value="optionHicpro"> + <param name='matrixHicpro' type='data' format='txt' label='.hic matrix' multiple="true"/> + <param name='bedHicpro' type='data' format='bed' label='HicPro bed file' multiple="true"/> + </when> + </conditional> + </xml> + <xml name='convertFormat_single_output_macro'> + <!-- <filter>outputSingleMultiple_conditional.inputFormat_conditional.inputFormat_selector == 'optionCool'</filter> --> + + <conditional name="outputFormat_conditional"> + <param name="outputFormat_selector" type="select" label="Choose output file type"> + <option value="cool" selected="True">cool</option> + <option value="h5">h5</option> + <option value="homer">Homer</option> + <option value="ginteractions">ginteractions</option> + + </param> + <when value="cool"> + <param name='storeAppliedCorrection' type="boolean" truevalue="yes" falsevalue="" label='Store applied correction factors in column count'/> + <param name='enforceInteger' type="boolean" truevalue="yes" falsevalue="" label='Enforce integer for count column'/> + </when> + <when value='h5'/> + <when value='homer'/> + <when value='ginteractions'/> + + </conditional> + </xml> <token name="@REFERENCES@"> .. class:: infomark
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/background.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,1002 @@ +Relative position size nbinom prob nbinom max value mean value +-500000 58.254577634279 0.998604709282 1.333333333333 0.000105073709 +-499000 10.000013353187 0.991925224088 1.500000000000 0.000105073709 +-498000 72.266262784304 0.998828265884 1.200000000000 0.000111077921 +-497000 51.093422441771 0.998183086351 1.000000000000 0.000120084239 +-496000 86.575220693033 0.998899865570 0.800000000000 0.000123086345 +-495000 72.441590407550 0.998655447638 0.800000000000 0.000126088451 +-494000 75.085350270547 0.998668414055 1.000000000000 0.000129090557 +-493000 71.967411178924 0.998612779641 1.000000000000 0.000129090557 +-492000 77.026231982211 0.998763649786 1.200000000000 0.000123086345 +-491000 96.154018360868 0.999129584825 1.000000000000 0.000108075815 +-490000 70.641792331241 0.998918479365 1.400000000000 0.000099069497 +-489000 72.297114570842 0.998971709245 0.800000000000 0.000096067391 +-488000 55.276417890737 0.998907322028 0.800000000000 0.000078054755 +-487000 75.866231077639 0.999020037562 0.600000000000 0.000096067391 +-486000 77.908114872120 0.999075493568 0.600000000000 0.000093065285 +-485000 70.196050128375 0.998940963837 0.600000000000 0.000096067391 +-484000 48.306835304302 0.998789125810 0.600000000000 0.000078054755 +-483000 65.826727385050 0.999115985283 0.600000000000 0.000075052649 +-482000 10.000003651221 0.996523342626 0.400000000000 0.000045031590 +-481000 48.188933357556 0.999179280048 0.400000000000 0.000051035802 +-480000 10.000001173914 0.997216871755 0.400000000000 0.000036025272 +-479000 10.000002160096 0.996985563716 0.400000000000 0.000039027378 +-478000 61.980720096540 0.999287603012 0.800000000000 0.000057040014 +-477000 47.193502172887 0.999138448161 0.600000000000 0.000054037908 +-476000 75.435666576826 0.999477638616 0.600000000000 0.000051035802 +-475000 83.258498044933 0.999385868055 0.600000000000 0.000066046332 +-474000 64.452927063111 0.999206823435 0.600000000000 0.000066046332 +-473000 68.592799621533 0.999390093904 0.600000000000 0.000054037908 +-472000 48.567204011739 0.999139405277 0.600000000000 0.000054037908 +-471000 10.000004448331 0.996292395667 0.600000000000 0.000048033696 +-470000 10.000000920405 0.995831238986 1.400000000000 0.000054037908 +-469000 10.000003872489 0.994909340544 1.400000000000 0.000066046332 +-468000 63.250123985231 0.999022818205 1.400000000000 0.000081056861 +-467000 51.399551404579 0.998558644000 1.400000000000 0.000096067391 +-466000 64.883458129266 0.998762977849 1.000000000000 0.000105073709 +-465000 86.383451689662 0.999139519880 0.800000000000 0.000096067391 +-464000 64.657320565128 0.998830168725 1.000000000000 0.000099069497 +-463000 69.011442263596 0.998889631783 1.000000000000 0.000099069497 +-462000 120.365580780362 0.999304923056 1.000000000000 0.000108075815 +-461000 83.873478804403 0.999085832019 1.000000000000 0.000099069497 +-460000 76.791436688795 0.998822607239 0.800000000000 0.000117082133 +-459000 71.300309154477 0.998707418591 1.000000000000 0.000120084239 +-458000 70.551044686671 0.998794143443 0.600000000000 0.000111077921 +-457000 88.657625851365 0.999084917164 0.800000000000 0.000105073709 +-456000 66.985331452249 0.998825498193 0.800000000000 0.000102071603 +-455000 212.376735013798 0.999710065148 0.600000000000 0.000078054755 +-454000 62.703317289439 0.999261443476 0.600000000000 0.000060042120 +-453000 45.696967611307 0.998932417121 0.600000000000 0.000063044226 +-452000 82.313181248075 0.999548168551 0.600000000000 0.000048033696 +-451000 61.955802866608 0.999249835457 0.600000000000 0.000060042120 +-450000 71.163546816639 0.999118429295 1.000000000000 0.000081056861 +-449000 57.404577886000 0.998868956077 1.000000000000 0.000084058967 +-448000 78.889496868591 0.999175114488 1.000000000000 0.000084058967 +-447000 59.455705064746 0.998872066360 1.000000000000 0.000087061073 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0.999101928660 0.800000000000 0.000168117935 +419000 111.237543251788 0.998747179894 1.200000000000 0.000180126359 +420000 71.543683033431 0.997956420620 1.200000000000 0.000189132677 +421000 67.274290337697 0.997653699455 1.600000000000 0.000204143206 +422000 64.705995027380 0.997311685980 1.600000000000 0.000225157948 +423000 101.434205484627 0.998031769527 1.400000000000 0.000258181114 +424000 86.889493446039 0.997600073281 1.400000000000 0.000270189538 +425000 122.557196728006 0.998314024248 1.200000000000 0.000267187432 +426000 93.483885085263 0.997741316659 1.200000000000 0.000273191644 +427000 84.930336242959 0.997433149990 1.200000000000 0.000282197962 +428000 100.859430667462 0.997863168223 1.400000000000 0.000279195856 +429000 78.275017393528 0.997082844309 1.200000000000 0.000294206386 +430000 101.986903284809 0.997906534850 1.400000000000 0.000276193750 +431000 70.287468861307 0.996997134263 1.800000000000 0.000273191644 +432000 84.841830499044 0.997855862208 1.400000000000 0.000234164266 +433000 79.861022088078 0.997733754394 1.400000000000 0.000234164266 +434000 83.290300490706 0.998104938852 1.200000000000 0.000204143206 +435000 75.026333069511 0.997834911529 0.800000000000 0.000210147418 +436000 90.616420661957 0.998155261017 1.000000000000 0.000216151630 +437000 98.178106096554 0.998272810314 1.000000000000 0.000222155842 +438000 76.064351498450 0.998018599283 1.000000000000 0.000195136889 +439000 77.557972858699 0.998204121542 1.000000000000 0.000180126359 +440000 84.343196302209 0.998264498130 1.200000000000 0.000189132677 +441000 70.480237483092 0.997902204548 0.800000000000 0.000189132677 +442000 87.265382444166 0.998244213785 1.400000000000 0.000198138995 +443000 108.392515295592 0.998432747334 1.400000000000 0.000222155842 +444000 82.443622273366 0.997719903159 1.400000000000 0.000243170584 +445000 70.933399279725 0.997396373546 1.400000000000 0.000243170584 +446000 95.161892262226 0.998095770809 1.600000000000 0.000234164266 +447000 124.614672839908 0.998565069417 1.200000000000 0.000231162160 +448000 77.860490008359 0.997704488044 1.400000000000 0.000231162160 +449000 65.217115835699 0.997403641809 1.400000000000 0.000219153736 +450000 75.445932132698 0.998007293338 1.200000000000 0.000198138995 +451000 95.181162634818 0.998473187366 1.000000000000 0.000186130571 +452000 94.977236808895 0.998461455130 1.000000000000 0.000189132677 +453000 71.519354123232 0.997988008873 1.000000000000 0.000186130571 +454000 75.038048093362 0.998148510684 1.000000000000 0.000183128465 +455000 66.094167095466 0.997699897371 1.000000000000 0.000198138995 +456000 111.325708146664 0.998498182775 1.000000000000 0.000216151630 +457000 102.171886886530 0.998454607629 1.000000000000 0.000204143206 +458000 88.125308869888 0.998313915544 1.000000000000 0.000192134783 +459000 70.605027521073 0.997930191387 0.800000000000 0.000189132677 +460000 100.268739339170 0.998772290781 0.600000000000 0.000159111617 +461000 74.543018827171 0.998473634038 0.800000000000 0.000147103193 +462000 63.337319446090 0.998204073767 0.800000000000 0.000147103193 +463000 117.089896011864 0.999027727546 0.800000000000 0.000147103193 +464000 91.138003901288 0.998496746777 1.800000000000 0.000177124253 +465000 92.914491189803 0.998350787907 1.800000000000 0.000198138995 +466000 52.209334348546 0.997159438011 2.400000000000 0.000192134783 +467000 77.918569531358 0.998034146232 2.800000000000 0.000198138995 +468000 40.028010375624 0.996410794913 2.800000000000 0.000186130571 +469000 52.807401795042 0.997408431862 1.400000000000 0.000177124253 +470000 105.325058737937 0.998676526339 1.400000000000 0.000180126359 +471000 97.395447231439 0.998474152554 1.000000000000 0.000192134783 +472000 71.036732364957 0.998055374489 1.200000000000 0.000183128465 +473000 58.839853998831 0.997768804625 1.200000000000 0.000174122147 +474000 109.506948227434 0.998942877974 1.000000000000 0.000150105299 +475000 73.687080792836 0.998676219719 0.600000000000 0.000126088451 +476000 86.562200266338 0.998926533547 0.600000000000 0.000120084239 +477000 78.601283549403 0.998670347780 0.600000000000 0.000135094769 +478000 77.287682759273 0.998311780993 1.000000000000 0.000168117935 +479000 80.196363250368 0.998336155363 0.800000000000 0.000174122147 +480000 95.618679354949 0.998538823715 0.800000000000 0.000180126359 +481000 71.324679124414 0.998079961192 1.000000000000 0.000177124253 +482000 98.947326582471 0.998662082026 1.200000000000 0.000171120041 +483000 98.312778915279 0.998677055532 1.000000000000 0.000168117935 +484000 80.536358888257 0.998500685590 1.200000000000 0.000156109511 +485000 75.299149742118 0.998174557637 1.200000000000 0.000177124253 +486000 80.676043504302 0.998160484267 1.600000000000 0.000192134783 +487000 65.456290718619 0.997731312445 1.600000000000 0.000192134783 +488000 135.605664962437 0.998837097471 1.400000000000 0.000204143206 +489000 78.041126983216 0.997890938542 1.600000000000 0.000213149524 +490000 73.842941938827 0.998020155259 1.200000000000 0.000192134783 +491000 135.330452041151 0.998884251454 1.000000000000 0.000195136889 +492000 70.441325198247 0.997891524929 1.000000000000 0.000192134783 +493000 93.145208276513 0.998579085962 1.200000000000 0.000171120041 +494000 93.195291870240 0.998579645775 1.200000000000 0.000171120041 +495000 66.167995861224 0.997615723218 1.200000000000 0.000204143206 +496000 68.869469387443 0.998039511367 1.200000000000 0.000174122147 +497000 61.393255588548 0.997958646123 1.400000000000 0.000162113723 +498000 64.393702971434 0.998089554455 1.200000000000 0.000159111617 +499000 64.222140571019 0.998102497389 1.000000000000 0.000157610564 +500000 10.000000000000 1.000000000000 0.000000000000 0.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,11 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 14274000 14279000 Eya1 673.0 -22000 7.00000 +chr1 14285000 14308000 Eya1 673.0 7000 389.40000 +chr1 14310000 14322000 Eya1 673.0 21000 54.80000 +chr1 14361000 14407000 Eya1 673.0 106000 21.20000 +chr1 14426000 14432000 Eya1 673.0 131000 2.40000 +chr1 14447000 14455000 Eya1 673.0 154000 4.40000 +chr1 14460000 14465000 Eya1 673.0 164000 3.20000 +chr1 14491000 14500000 Eya1 673.0 199000 17.65000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,7 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 19077000 19114000 Tfap2d 472.0 20000 344.80000 +chr1 19125000 19129000 Tfap2d 472.0 35000 7.80000 +chr1 19134000 19139000 Tfap2d 472.0 45000 8.40000 +chr1 19141000 19238000 Tfap2d 472.0 144000 47.40000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,9 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 4472000 4503000 Sox17 810.0 15000 566.20000 +chr1 4507000 4516000 Sox17 810.0 28000 38.80000 +chr1 4520000 4531000 Sox17 810.0 43000 10.40000 +chr1 4533000 4543000 Sox17 810.0 55000 6.80000 +chr1 4562000 4593000 Sox17 810.0 105000 25.00000 +chr1 4664000 4669000 Sox17 810.0 181000 1.20000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,11 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 14274000 14279000 Eya1 832.0 -22000 0.00000 +chr1 14285000 14308000 Eya1 832.0 7000 479.80000 +chr1 14310000 14322000 Eya1 832.0 21000 52.80000 +chr1 14361000 14407000 Eya1 832.0 106000 36.00000 +chr1 14426000 14432000 Eya1 832.0 131000 9.00000 +chr1 14447000 14455000 Eya1 832.0 154000 12.40000 +chr1 14460000 14465000 Eya1 832.0 164000 7.60000 +chr1 14491000 14500000 Eya1 832.0 199000 15.75000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,7 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 19077000 19114000 Tfap2d 800.0 20000 527.80000 +chr1 19125000 19129000 Tfap2d 800.0 35000 8.80000 +chr1 19134000 19139000 Tfap2d 800.0 45000 11.20000 +chr1 19141000 19238000 Tfap2d 800.0 144000 163.00000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,9 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 4472000 4503000 Sox17 978.0 15000 724.40000 +chr1 4507000 4516000 Sox17 978.0 28000 19.00000 +chr1 4520000 4531000 Sox17 978.0 43000 22.20000 +chr1 4533000 4543000 Sox17 978.0 55000 12.20000 +chr1 4562000 4593000 Sox17 978.0 105000 23.20000 +chr1 4664000 4669000 Sox17 978.0 181000 5.40000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode_file_names.txt Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,6 @@ +FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed +MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed +FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed +MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed +MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,11 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 14274000 14279000 Eya1 673.0 -22000 7.00000 +chr1 14285000 14308000 Eya1 673.0 7000 389.40000 +chr1 14310000 14322000 Eya1 673.0 21000 54.80000 +chr1 14361000 14407000 Eya1 673.0 106000 21.20000 +chr1 14426000 14432000 Eya1 673.0 131000 2.40000 +chr1 14447000 14455000 Eya1 673.0 154000 4.40000 +chr1 14460000 14465000 Eya1 673.0 164000 3.20000 +chr1 14491000 14500000 Eya1 673.0 199000 17.65000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,11 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 14274000 14279000 Eya1 832.0 -22000 0.00000 +chr1 14285000 14308000 Eya1 832.0 7000 479.80000 +chr1 14310000 14322000 Eya1 832.0 21000 52.80000 +chr1 14361000 14407000 Eya1 832.0 106000 36.00000 +chr1 14426000 14432000 Eya1 832.0 131000 9.00000 +chr1 14447000 14455000 Eya1 832.0 154000 12.40000 +chr1 14460000 14465000 Eya1 832.0 164000 7.60000 +chr1 14491000 14500000 Eya1 832.0 199000 15.75000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96904
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,17 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00335 +chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.21097 +chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.25281 +chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.10924 +chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.12863 +chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.32025 +chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.35033
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,18 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00335 +chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96904 +chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.21097 +chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.25281 +chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.10924 +chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.12863 +chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.32025 +chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.35033
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.60118
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,13 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.25943 +chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.40802 +chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00004
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,14 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.25943 +chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.40802 +chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.60118 +chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00004
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,10 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,16 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.43072 +chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00105 +chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.12754 +chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.40725 +chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.36639 +chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.16231
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,16 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.43072 +chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00105 +chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.12754 +chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.40725 +chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.36639 +chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.16231
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,12 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586 +chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,16 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366 +chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002 +chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706 +chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523 +chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210 +chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,18 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366 +chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586 +chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002 +chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706 +chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523 +chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210 +chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425 +chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.65094
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,13 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.27744 +chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.45206 +chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00005
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,14 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.27744 +chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.45206 +chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.65094 +chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00005
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,10 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,16 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.44082 +chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00117 +chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.16402 +chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.37847 +chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.46860 +chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.30594
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,16 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.44082 +chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00117 +chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.16402 +chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.37847 +chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.46860 +chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.30594
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,12 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586 +chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,16 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366 +chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002 +chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706 +chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523 +chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210 +chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,18 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366 +chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586 +chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002 +chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706 +chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523 +chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210 +chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425 +chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/rejectedFilesList.txt Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,3 @@ +FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed +FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed +FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed \ No newline at end of file
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Binary file test-data/cHi-C/chicPlotViewpoint/batchMode/two/Eya1_FL-E13-5_MB-E10-5_chr1_chr1_14300280.png has changed
Binary file test-data/cHi-C/chicPlotViewpoint/batchMode/two/Sox17_FL-E13-5_MB-E10-5_chr1_chr1_4487435.png has changed
Binary file test-data/cHi-C/chicPlotViewpoint/batchMode/two/Tfap2d_FL-E13-5_MB-E10-5_chr1_chr1_19093103.png has changed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,35 @@ +chr1 4487435 4487435 Sox17 +chr1 14300280 14300280 Eya1 +chr1 19093103 19093103 Tfap2d +chr1 24202042 24202042 Col9a1 +chr1 33776741 33776741 Rab23 +chr1 38684089 38684089 Aff3 +chr1 42753991 42753991 Pou3f3 +chr1 52176282 52176282 Stat1 +chr1 53118507 53118507 Mstn +chr1 57028178 57028178 Satb2 +chr1 59821123 59821123 Bmpr2 +chr1 66991630 66991630 Myl1 +chr1 74648029 74648029 Stk36 +chr1 74818466 74818466 Wnt6 +chr1 75356867 75356867 Des +chr1 77511663 77511663 Epha4 +chr1 78193711 78193711 Pax3 +chr1 89102386 89102386 Chrng +chr1 93355905 93355905 Per2 +chr1 93698054 93698054 Twist2 +chr1 107677300 107677300 Tnfrsf11a +chr1 120950196 120950196 Gli2 +chr1 122499064 122499064 En1 +chr1 127808791 127808791 Lypd1 +chr1 135934092 135934092 Fmod +chr1 136186581 136186581 MyoG +chr1 164004278 164006270 mm712 +chr1 164147754 164147754 Dnm3os +chr1 165243781 165243781 Prrx1 +chr1 165333772 165333772 Gorab +chr1 169619689 169619689 Lmx1a +chr1 182823250 182823250 Lefty2 +chr1 182865170 182865170 Lefty1 +chr1 188529871 188529871 Tgfb2 +chr1 194979306 194979306 Irf6
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed_raw_filter Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,45 @@ +# Created with chicQualityControl version 3.3 +# Chromosome Start End Sparsity 0_matrix.cool Sparsity 1_matrix.cool +chr1 4487435 4487435 Sox17 0.14485514485514486 0.16083916083916083 +chr1 14300280 14300280 Eya1 0.14285714285714285 0.1938061938061938 +chr1 19093103 19093103 Tfap2d 0.1048951048951049 0.16683316683316685 +chr1 19198995 19198995 Tfap2b 0.01898101898101898 0.016983016983016984 +chr1 24202042 24202042 Col9a1 0.10589410589410589 0.12787212787212787 +chr1 33776741 33776741 Rab23 0.15484515484515485 0.2137862137862138 +chr1 38684089 38684089 Aff3 0.11588411588411589 0.11388611388611389 +chr1 42753991 42753991 Pou3f3 0.04995004995004995 0.07592407592407592 +chr1 52176282 52176282 Stat1 0.19080919080919082 0.22777222777222778 +chr1 52557292 52557292 Nab1 0.02197802197802198 0.024975024975024976 +chr1 53118507 53118507 Mstn 0.3116883116883117 0.37462537462537465 +chr1 57028178 57028178 Satb2 0.12287712287712288 0.14385614385614387 +chr1 59821123 59821123 Bmpr2 0.14085914085914086 0.16983016983016982 +chr1 66991630 66991630 Myl1 0.0919080919080919 0.09290709290709291 +chr1 74648029 74648029 Stk36 0.2777222777222777 0.3356643356643357 +chr1 74818466 74818466 Wnt6 0.29270729270729273 0.34165834165834164 +chr1 74838593 74838593 Wnt10a 0.00999000999000999 0.008991008991008992 +chr1 74998246 74998246 Ihh 0.008991008991008992 0.003996003996003996 +chr1 75356867 75356867 Des 0.18081918081918083 0.21678321678321677 +chr1 77511663 77511663 Epha4 0.15684315684315683 0.22277722277722278 +chr1 78193711 78193711 Pax3 0.24375624375624375 0.3096903096903097 +chr1 89102386 89102386 Chrng 0.16783216783216784 0.2217782217782218 +chr1 93355905 93355905 Per2 0.15384615384615385 0.16483516483516483 +chr1 93698054 93698054 Twist2 0.22277722277722278 0.23476523476523475 +chr1 94076918 94076918 Hdac4 0.0 0.0 +chr1 107677300 107677300 Tnfrsf11a 0.14685314685314685 0.16383616383616384 +chr1 120950196 120950196 Gli2 0.13986013986013987 0.2007992007992008 +chr1 122499064 122499064 En1 0.1008991008991009 0.11988011988011989 +chr1 127808791 127808791 Lypd1 0.18681318681318682 0.22977022977022976 +chr1 135934092 135934092 Fmod 0.3516483516483517 0.4145854145854146 +chr1 136186581 136186581 MyoG 0.07392607392607392 0.09090909090909091 +chr1 152313295 152313295 Prg4 0.00999000999000999 0.006993006993006993 +chr1 164004278 164006270 mm712 0.26173826173826176 0.2867132867132867 +chr1 164147754 164147754 Dnm3os 0.24875124875124874 0.24675324675324675 +chr1 165243781 165243781 Prrx1 0.36063936063936064 0.34065934065934067 +chr1 165333772 165333772 Gorab 0.36863136863136864 0.3956043956043956 +chr1 169619689 169619689 Lmx1a 0.11888111888111888 0.16783216783216784 +chr1 170362300 170362300 Pbx1 0.003996003996003996 0.002997002997002997 +chr1 180249284 180249284 Gm16586 0.0 0.0 +chr1 182823250 182823250 Lefty2 0.27472527472527475 0.33266733266733267 +chr1 182865170 182865170 Lefty1 0.25674325674325676 0.3086913086913087 +chr1 188529871 188529871 Tgfb2 0.13486513486513488 0.16583416583416583 +chr1 194979306 194979306 Irf6 0.12987012987012986 0.15284715284715283
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed_rejected_filter Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,8 @@ +chr1 19198995 19198995 Tfap2b +chr1 52557292 52557292 Nab1 +chr1 74838593 74838593 Wnt10a +chr1 74998246 74998246 Ihh +chr1 94076918 94076918 Hdac4 +chr1 152313295 152313295 Prg4 +chr1 170362300 170362300 Pbx1 +chr1 180249284 180249284 Gm16586
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.01042503066537725509 7.81112575817000021061 5.59999999999999964473 +chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.10421572859864158822 3.78135593591500018817 39.00000000000000000000 +chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.05171206541410811042 3.19033393500999995496 10.19999999999999928946 +chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.04670037874744681350 3.51709033858399999772 9.80000000000000071054 +chr1 14480000 14488000 Eya1 673.0 184000 0.01129271916799999900 0.00000005723969254134 19.28508294646199772160 7.59999999999999875655 +chr1 14491000 14501000 Eya1 673.0 200000 0.03068350668399999828 0.00000000000003064216 56.96782483342801128856 20.64999999999999857891
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,10 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev +# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 14274000 14278000 +chr1 14296000 14298000 +chr1 14314000 14319000 +chr1 14480000 14488000 +chr1 14491000 14501000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_2/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14274000 14279000 Eya1 673.0 -26000 0.01040118870499999980 0.00284160000885891328 9.15400589712000112286 7.00000000000000000000 +chr1 14285000 14303000 Eya1 673.0 -1000 0.50282317979099999672 0.00136523720299208673 11.07298757284899970443 338.40000000000003410605 +chr1 14304000 14308000 Eya1 673.0 4000 0.05438335809800000364 0.04630738638109899163 4.54925916911999994596 36.60000000000000142109 +chr1 14310000 14322000 Eya1 673.0 11000 0.08142644873500000380 0.00000295000019367997 16.90046348151199850918 54.79999999999999715783 +chr1 14361000 14395000 Eya1 673.0 61000 0.01872213967299999823 0.00000368259652272496 14.85031269307799917101 12.60000000000000142109 +chr1 14491000 14500000 Eya1 673.0 199000 0.02622585438099999874 0.00000000000000932587 49.39210160776001146132 17.64999999999999857891
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_2_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,10 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev +# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: loose p-value with 0.5 +# Used p-value: 0.2 +# +chr1 14274000 14279000 +chr1 14285000 14308000 +chr1 14310000 14322000 +chr1 14361000 14395000 +chr1 14491000 14500000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.01042503066537725509 7.81112575817000021061 5.59999999999999964473 +chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.10421572859864158822 3.78135593591500018817 39.00000000000000000000 +chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.05171206541410811042 3.19033393500999995496 10.19999999999999928946 +chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.04670037874744681350 3.51709033858399999772 9.80000000000000071054 +chr1 14480000 14488000 Eya1 673.0 184000 0.01129271916799999900 0.00000005723969254134 19.28508294646199772160 7.59999999999999875655 +chr1 14491000 14501000 Eya1 673.0 200000 0.03068350668399999828 0.00000000000003064216 56.96782483342801128856 20.64999999999999857891
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,7 @@ +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14295000 14298000 Eya1 832.0 -3000 0.05985576923100000002 0.06113759528369666629 4.79015312599299925012 49.79999999999999715783 +chr1 14426000 14432000 Eya1 832.0 130000 0.01081730769300000110 0.00000042985602966006 13.72351582211000042832 9.00000000000000000000 +chr1 14447000 14455000 Eya1 832.0 149000 0.01490384615199999950 0.00000000000012301271 22.36493893927400122834 12.39999999999999857891 +chr1 14460000 14465000 Eya1 832.0 162000 0.00913461538499999934 0.00001124312488187673 12.15366029908999934150 7.59999999999999964473 +chr1 14491000 14501000 Eya1 832.0 200000 0.02253605769199999720 0.00000000000003064216 41.39757163433100117800 18.75000000000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,10 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3 +# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 14274000 14278000 +chr1 14296000 14298000 +chr1 14314000 14319000 +chr1 14480000 14488000 +chr1 14491000 14501000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,10 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3 +# targetFolder/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 14295000 14298000 +chr1 14426000 14432000 +chr1 14447000 14455000 +chr1 14460000 14465000 +chr1 14491000 14501000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.01042503066537725509 7.81112575817000021061 5.59999999999999964473 +chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.10421572859864158822 3.78135593591500018817 39.00000000000000000000 +chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.05171206541410811042 3.19033393500999995496 10.19999999999999928946 +chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.04670037874744681350 3.51709033858399999772 9.80000000000000071054 +chr1 14480000 14488000 Eya1 673.0 184000 0.01129271916799999900 0.00000005723969254134 19.28508294646199772160 7.59999999999999875655 +chr1 14491000 14501000 Eya1 673.0 200000 0.03068350668399999828 0.00000000000003064216 56.96782483342801128856 20.64999999999999857891
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,10 @@ +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 19089000 19091000 Tfap2d 472.0 -3000 0.06101694915199999680 0.18835888966198111039 4.06818820852600016025 28.80000000000000071054 +chr1 19104000 19106000 Tfap2d 472.0 11000 0.02245762711799999950 0.11671915718551462149 3.62722049649999966903 10.59999999999999964473 +chr1 19109000 19114000 Tfap2d 472.0 18000 0.03940677966200000631 0.00080680261510490681 9.61739201792699915927 18.60000000000000142109 +chr1 19125000 19129000 Tfap2d 472.0 33000 0.01652542372999999884 0.00829653069244939978 7.28507499155399962376 7.79999999999999982236 +chr1 19133000 19138000 Tfap2d 472.0 41000 0.01949152542399999744 0.00041957482022692005 9.72184228688099949522 9.19999999999999928946 +chr1 19197000 19202000 Tfap2d 472.0 108000 0.01059322033899999863 0.00398884532051024809 10.24326734149200035517 5.00000000000000000000 +chr1 19227000 19233000 Tfap2d 472.0 137000 0.01186440677899999914 0.00244241040005155341 14.41899403645599875290 5.59999999999999964473 +chr1 19254000 19261000 Tfap2d 472.0 163000 0.01355932203300000069 0.00004326025137579848 19.68794216164500454624 6.39999999999999946709
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 4509000 4515000 Sox17 810.0 23000 0.03432098765399999724 0.00000160319175224188 11.55191083898800030738 27.80000000000000071054 +chr1 4561000 4567000 Sox17 810.0 75000 0.01432098765400000029 0.00000102319718320310 11.23656007944399881637 11.59999999999999964473 +chr1 4585000 4590000 Sox17 810.0 98000 0.00987654320999999807 0.00037019878415911478 8.98479195802099894763 8.00000000000000000000 +chr1 4652000 4658000 Sox17 810.0 169000 0.00740740740700000008 0.00005538687174366785 11.12107213938599947767 6.00000000000000000000 +chr1 4499000 4500000 Sox17 810.0 12000 0.00987654320999999981 0.15859163588059266292 1.65903762227799989049 8.00000000000000000000 +chr1 4501000 4502000 Sox17 810.0 14000 0.00765432098799999957 0.17926099806325068720 1.57677828943600006895 6.20000000000000017764
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4_significant_files.txt Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,3 @@ +FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed +FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,10 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev +# chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 14274000 14278000 +chr1 14296000 14298000 +chr1 14314000 14319000 +chr1 14480000 14488000 +chr1 14491000 14501000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,13 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev +# chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 19089000 19091000 +chr1 19104000 19106000 +chr1 19109000 19114000 +chr1 19125000 19129000 +chr1 19133000 19138000 +chr1 19197000 19202000 +chr1 19227000 19233000 +chr1 19254000 19261000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,10 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev +# chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 4499000 4502000 +chr1 4509000 4515000 +chr1 4561000 4567000 +chr1 4585000 4590000 +chr1 4652000 4658000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target_list.txt Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,3 @@ +FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed +FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14274000 14279000 Eya1 673.0 -26000 0.01040118870499999980 0.00284160000885891328 9.15400589712000112286 7.00000000000000000000 +chr1 14285000 14303000 Eya1 673.0 -1000 0.50282317979099999672 0.00136523720299208673 11.07298757284899970443 338.40000000000003410605 +chr1 14304000 14308000 Eya1 673.0 4000 0.05438335809800000364 0.04630738638109899163 4.54925916911999994596 36.60000000000000142109 +chr1 14310000 14322000 Eya1 673.0 11000 0.08142644873500000380 0.00000295000019367997 16.90046348151199850918 54.79999999999999715783 +chr1 14361000 14395000 Eya1 673.0 61000 0.01872213967299999823 0.00000368259652272496 14.85031269307799917101 12.60000000000000142109 +chr1 14491000 14500000 Eya1 673.0 199000 0.02622585438099999874 0.00000000000000932587 49.39210160776001146132 17.64999999999999857891
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 19097000 19099000 Tfap2d 472.0 4000 0.04322033898299999788 0.18510915606880684603 3.09466471690400002359 20.39999999999999857891 +chr1 19103000 19106000 Tfap2d 472.0 11000 0.03305084745700000159 0.03717817323565530963 5.08894228542100002244 15.60000000000000142109 +chr1 19110000 19114000 Tfap2d 472.0 18000 0.03135593220400000047 0.00456343459440844423 7.84960476513000049437 14.79999999999999893419 +chr1 19126000 19129000 Tfap2d 472.0 33000 0.01271186440799999991 0.01781395819889997068 5.68520760692500015665 6.00000000000000000000 +chr1 19134000 19137000 Tfap2d 472.0 41000 0.01271186440799999991 0.00778984492262324579 6.25346808942800080899 6.00000000000000000000 +chr1 19162000 19198000 Tfap2d 472.0 69000 0.02966101695299999674 0.00000060908645727054 24.93693789855100106934 14.00000000000000532907
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 4483000 4496000 Sox17 810.0 0 0.64098765432000004427 0.00000017949046104970 15.90973968251499925941 519.20000000000004547474 +chr1 4497000 4503000 Sox17 810.0 12000 0.04592592592699999698 0.00009501601454375841 8.17222136878799965132 37.19999999999999573674 +chr1 4507000 4516000 Sox17 810.0 23000 0.04790123456699999643 0.00000000479943529363 15.54534421085400097695 38.80000000000000426326 +chr1 4533000 4543000 Sox17 810.0 46000 0.00839506173000000022 0.00536916279076038450 5.36115769549400056349 6.79999999999999893419 +chr1 4562000 4565000 Sox17 810.0 75000 0.00814814814800000030 0.00087160464483748701 6.21039574622800039094 6.59999999999999964473 +chr1 4567000 4585000 Sox17 810.0 81000 0.00814814814699999987 0.00084968562666110081 6.38963961746400066488 6.60000000000000053291
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,11 @@ +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14295000 14303000 Eya1 832.0 -1000 0.51754807692400006669 0.00019954744684358428 10.99424166368200062038 430.60000000000002273737 +chr1 14304000 14307000 Eya1 832.0 4000 0.03052884615399999862 0.12043367620410594387 2.40926082355099957510 25.39999999999999857891 +chr1 14311000 14322000 Eya1 832.0 11000 0.05841346153899999727 0.00001294028787446333 12.63215080382700250539 48.59999999999999431566 +chr1 14369000 14382000 Eya1 832.0 69000 0.00793269231000000123 0.00220510219722336309 6.44339861264899926852 6.59999999999999875655 +chr1 14391000 14407000 Eya1 832.0 106000 0.01201923077000000006 0.00000515283260571486 11.00547257592000072179 10.00000000000000000000 +chr1 14426000 14432000 Eya1 832.0 130000 0.01081730769300000110 0.00000042985602966006 13.72351582211000042832 9.00000000000000000000 +chr1 14447000 14455000 Eya1 832.0 149000 0.01490384615199999950 0.00000000000012301271 22.36493893927400122834 12.39999999999999857891 +chr1 14460000 14465000 Eya1 832.0 162000 0.00913461538499999934 0.00001124312488187673 12.15366029908999934150 7.59999999999999964473 +chr1 14491000 14500000 Eya1 832.0 199000 0.01893028846099999857 0.00000000000000932587 35.26961282318300305860 15.75000000000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,10 @@ +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 19077000 19082000 Tfap2d 800.0 -15000 0.01675000000000000100 0.00195382844240210574 8.20856302019300088091 13.40000000000000035527 +chr1 19083000 19095000 Tfap2d 800.0 0 0.41274999999999995026 0.00011621308769860228 18.49630381537900092326 330.19999999999998863132 +chr1 19096000 19114000 Tfap2d 800.0 3000 0.17700000000000001843 0.00042447176642534945 22.86014655871399980924 141.59999999999999431566 +chr1 19125000 19129000 Tfap2d 800.0 33000 0.01099999999999999936 0.00379145119303403444 4.83882643603000062171 8.80000000000000071054 +chr1 19135000 19139000 Tfap2d 800.0 43000 0.01175000000000000003 0.00015657417058367873 6.23967021246500053167 9.40000000000000035527 +chr1 19141000 19170000 Tfap2d 800.0 49000 0.02125000000000001193 0.00000543603606051324 15.65207577841900032922 17.00000000000000355271 +chr1 19195000 19208000 Tfap2d 800.0 105000 0.04900000000000001577 0.00000000000000000000 47.90516101420298866742 39.20000000000000284217 +chr1 19209000 19238000 Tfap2d 800.0 124000 0.09275000000000004075 0.00000000000000000000 112.06129567939001390187 74.20000000000000284217
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,9 @@ +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 4472000 4492000 Sox17 978.0 0 0.66196319018500004994 0.00000000202165995056 17.41734930604599895787 647.40000000000009094947 +chr1 4493000 4496000 Sox17 978.0 6000 0.02576687116499999652 0.03614683764250059550 2.69049295166299984317 25.20000000000000284217 +chr1 4497000 4503000 Sox17 978.0 12000 0.03946830265799999848 0.00007297810251505332 7.02344214143100042946 38.60000000000000142109 +chr1 4520000 4531000 Sox17 978.0 37000 0.02269938650399999994 0.00000000003034350549 10.91808266157200080215 22.20000000000000284217 +chr1 4562000 4566000 Sox17 978.0 78000 0.00920245398800000058 0.00000732123325153378 7.15040494335099996448 9.00000000000000000000 +chr1 4569000 4593000 Sox17 978.0 93000 0.01022494887899999885 0.00001986913191398543 8.54218878677400006438 9.99999999999999822364 +chr1 4664000 4669000 Sox17 978.0 179000 0.00552147239400000052 0.00001416173948909361 8.93206575494200016863 5.40000000000000035527
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,6 @@ +FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed +MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed +FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed +MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed +MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,13 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3 +# targetFolder/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: loose p-value with 0.5 +# Used p-value: 0.2 +# +chr1 14274000 14279000 +chr1 14285000 14308000 +chr1 14310000 14322000 +chr1 14361000 14407000 +chr1 14426000 14432000 +chr1 14447000 14455000 +chr1 14460000 14465000 +chr1 14491000 14500000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,9 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3 +# targetFolder/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed +# Mode: loose p-value with 0.5 +# Used p-value: 0.2 +# +chr1 19077000 19114000 +chr1 19125000 19129000 +chr1 19134000 19139000 +chr1 19141000 19238000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,11 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3 +# targetFolder/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed +# Mode: loose p-value with 0.5 +# Used p-value: 0.2 +# +chr1 4472000 4503000 +chr1 4507000 4516000 +chr1 4520000 4531000 +chr1 4533000 4543000 +chr1 4562000 4593000 +chr1 4664000 4669000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target_list.txt Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,3 @@ +FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed +FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed +FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/fileNames_one_matrix.txt Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,3 @@ +FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed +FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/fileNames_two_matrices.txt Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,6 @@ +FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed +MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed +FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed +MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed +MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 14100000 14101000 Eya1 673.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 14101000 14102000 Eya1 673.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 14102000 14103000 Eya1 673.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 14103000 14104000 Eya1 673.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 14104000 14105000 Eya1 673.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 14105000 14106000 Eya1 673.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 14106000 14107000 Eya1 673.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 14107000 14108000 Eya1 673.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 14108000 14109000 Eya1 673.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 14109000 14110000 Eya1 673.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 14110000 14111000 Eya1 673.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 14111000 14112000 Eya1 673.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 14112000 14113000 Eya1 673.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 14113000 14114000 Eya1 673.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 14114000 14115000 Eya1 673.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 14115000 14116000 Eya1 673.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 14116000 14117000 Eya1 673.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 14117000 14118000 Eya1 673.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 14118000 14119000 Eya1 673.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 14119000 14120000 Eya1 673.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 14120000 14121000 Eya1 673.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 14121000 14122000 Eya1 673.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 14122000 14123000 Eya1 673.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 14123000 14124000 Eya1 673.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 14124000 14125000 Eya1 673.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 14125000 14126000 Eya1 673.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 14126000 14127000 Eya1 673.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 14127000 14128000 Eya1 673.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 14128000 14129000 Eya1 673.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 14129000 14130000 Eya1 673.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 14130000 14131000 Eya1 673.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 14131000 14132000 Eya1 673.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 14132000 14133000 Eya1 673.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 14133000 14134000 Eya1 673.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 14134000 14135000 Eya1 673.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 14135000 14136000 Eya1 673.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 14136000 14137000 Eya1 673.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 14137000 14138000 Eya1 673.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 14138000 14139000 Eya1 673.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 14139000 14140000 Eya1 673.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 14140000 14141000 Eya1 673.0 -160000 0.000891530461 0.849999946243 4.242405017910 0.600000000000 +chr1 14141000 14142000 Eya1 673.0 -159000 0.000891530461 0.869107683649 4.789812097144 0.600000000000 +chr1 14142000 14143000 Eya1 673.0 -158000 0.000891530461 0.851329217290 4.303889149198 0.600000000000 +chr1 14143000 14144000 Eya1 673.0 -157000 0.000891530461 0.855727455775 4.367181637306 0.600000000000 +chr1 14144000 14145000 Eya1 673.0 -156000 0.000891530461 0.873934387705 5.120143967809 0.600000000000 +chr1 14145000 14146000 Eya1 673.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 14146000 14147000 Eya1 673.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 14147000 14148000 Eya1 673.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 14148000 14149000 Eya1 673.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 14149000 14150000 Eya1 673.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 14150000 14151000 Eya1 673.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 14151000 14152000 Eya1 673.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 14152000 14153000 Eya1 673.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 14153000 14154000 Eya1 673.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000 +chr1 14154000 14155000 Eya1 673.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000 +chr1 14155000 14156000 Eya1 673.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000 +chr1 14156000 14157000 Eya1 673.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000 +chr1 14157000 14158000 Eya1 673.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000 +chr1 14158000 14159000 Eya1 673.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000 +chr1 14159000 14160000 Eya1 673.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000 +chr1 14160000 14161000 Eya1 673.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000 +chr1 14161000 14162000 Eya1 673.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000 +chr1 14162000 14163000 Eya1 673.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000 +chr1 14163000 14164000 Eya1 673.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000 +chr1 14164000 14165000 Eya1 673.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000 +chr1 14165000 14166000 Eya1 673.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000 +chr1 14166000 14167000 Eya1 673.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000 +chr1 14167000 14168000 Eya1 673.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000 +chr1 14168000 14169000 Eya1 673.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000 +chr1 14169000 14170000 Eya1 673.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000 +chr1 14170000 14171000 Eya1 673.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000 +chr1 14171000 14172000 Eya1 673.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000 +chr1 14172000 14173000 Eya1 673.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000 +chr1 14173000 14174000 Eya1 673.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000 +chr1 14174000 14175000 Eya1 673.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000 +chr1 14175000 14176000 Eya1 673.0 -125000 0.000297176820 0.789042220648 0.916568982282 0.200000000000 +chr1 14176000 14177000 Eya1 673.0 -124000 0.000297176820 0.798137256530 0.908160092485 0.200000000000 +chr1 14177000 14178000 Eya1 673.0 -123000 0.000297176820 0.785510253584 0.798302018335 0.200000000000 +chr1 14178000 14179000 Eya1 673.0 -122000 0.000297176820 0.799644194656 0.925135047590 0.200000000000 +chr1 14179000 14180000 Eya1 673.0 -121000 0.000297176820 0.790961581141 0.883834378206 0.200000000000 +chr1 14180000 14181000 Eya1 673.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000 +chr1 14181000 14182000 Eya1 673.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000 +chr1 14182000 14183000 Eya1 673.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000 +chr1 14183000 14184000 Eya1 673.0 -117000 0.000297176820 0.774846873828 0.860777829009 0.200000000000 +chr1 14184000 14185000 Eya1 673.0 -116000 0.000297176820 0.765795808398 0.791915602137 0.200000000000 +chr1 14185000 14186000 Eya1 673.0 -115000 0.000297176820 0.757379810911 0.761457309513 0.200000000000 +chr1 14186000 14187000 Eya1 673.0 -114000 0.000297176820 0.773895809279 0.811388936776 0.200000000000 +chr1 14187000 14188000 Eya1 673.0 -113000 0.000297176820 0.780251801078 0.891796850153 0.200000000000 +chr1 14188000 14189000 Eya1 673.0 -112000 0.000000000000 0.809192563048 0.000000000000 0.000000000000 +chr1 14189000 14190000 Eya1 673.0 -111000 0.000297176820 0.805959066383 1.064402690160 0.200000000000 +chr1 14190000 14191000 Eya1 673.0 -110000 0.000297176820 0.826154588365 1.207188418049 0.200000000000 +chr1 14191000 14192000 Eya1 673.0 -109000 0.000297176820 0.796608508060 1.010096430089 0.200000000000 +chr1 14192000 14193000 Eya1 673.0 -108000 0.000297176820 0.785369993572 0.951821635672 0.200000000000 +chr1 14193000 14194000 Eya1 673.0 -107000 0.000297176820 0.763585636187 0.824912085835 0.200000000000 +chr1 14194000 14195000 Eya1 673.0 -106000 0.000000000000 0.796206503792 0.000000000000 0.000000000000 +chr1 14195000 14196000 Eya1 673.0 -105000 0.000000000000 0.801881199084 0.000000000000 0.000000000000 +chr1 14196000 14197000 Eya1 673.0 -104000 0.000000000000 0.830453698245 0.000000000000 0.000000000000 +chr1 14197000 14198000 Eya1 673.0 -103000 0.001188707281 0.843960603767 5.424079472832 0.800000000000 +chr1 14198000 14199000 Eya1 673.0 -102000 0.001188707281 1.000000000000 5.499413910652 0.800000000000 +chr1 14199000 14200000 Eya1 673.0 -101000 0.001188707281 0.853858772997 5.822908849742 0.800000000000 +chr1 14200000 14201000 Eya1 673.0 -100000 0.001188707281 0.828442819541 4.888367915554 0.800000000000 +chr1 14201000 14202000 Eya1 673.0 -99000 0.001188707281 0.815159530773 4.499520464782 0.800000000000 +chr1 14202000 14203000 Eya1 673.0 -98000 0.000000000000 0.803890742201 0.000000000000 0.000000000000 +chr1 14203000 14204000 Eya1 673.0 -97000 0.000000000000 0.793812954579 0.000000000000 0.000000000000 +chr1 14204000 14205000 Eya1 673.0 -96000 0.000000000000 0.776513211062 0.000000000000 0.000000000000 +chr1 14205000 14206000 Eya1 673.0 -95000 0.000000000000 0.769795672212 0.000000000000 0.000000000000 +chr1 14206000 14207000 Eya1 673.0 -94000 0.000594353640 0.745179566394 1.546710160135 0.400000000000 +chr1 14207000 14208000 Eya1 673.0 -93000 0.000594353640 0.740519396446 1.488563161197 0.400000000000 +chr1 14208000 14209000 Eya1 673.0 -92000 0.000594353640 0.723302632894 1.093806079608 0.400000000000 +chr1 14209000 14210000 Eya1 673.0 -91000 0.000594353640 0.723801019412 1.031140105862 0.400000000000 +chr1 14210000 14211000 Eya1 673.0 -90000 0.000594353640 0.727642253997 1.020509795419 0.400000000000 +chr1 14211000 14212000 Eya1 673.0 -89000 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14457000 Eya1 673.0 156000 0.000594353640 0.613314445827 0.876012833675 0.400000000000 +chr1 14457000 14458000 Eya1 673.0 157000 0.000594353640 0.602751520183 0.821489212945 0.400000000000 +chr1 14458000 14459000 Eya1 673.0 158000 0.001188707281 0.585293824856 1.583831204275 0.800000000000 +chr1 14459000 14460000 Eya1 673.0 159000 0.000594353640 0.573814787091 0.770345916308 0.400000000000 +chr1 14460000 14461000 Eya1 673.0 160000 0.001188707281 0.559100492248 1.517079697070 0.800000000000 +chr1 14461000 14462000 Eya1 673.0 161000 0.001188707281 0.533506885425 1.429450544260 0.800000000000 +chr1 14462000 14463000 Eya1 673.0 162000 0.001188707281 0.591476571829 1.616154290340 0.800000000000 +chr1 14463000 14464000 Eya1 673.0 163000 0.000594353640 0.593731273297 0.821489212945 0.400000000000 +chr1 14464000 14465000 Eya1 673.0 164000 0.000594353640 0.604924746422 0.857051516792 0.400000000000 +chr1 14465000 14466000 Eya1 673.0 165000 0.000000000000 0.620870359018 0.000000000000 0.000000000000 +chr1 14466000 14467000 Eya1 673.0 166000 0.000000000000 0.653063136379 0.000000000000 0.000000000000 +chr1 14467000 14468000 Eya1 673.0 167000 0.000000000000 0.616215444951 0.000000000000 0.000000000000 +chr1 14468000 14469000 Eya1 673.0 168000 0.000000000000 0.616137376589 0.000000000000 0.000000000000 +chr1 14469000 14470000 Eya1 673.0 169000 0.000000000000 0.600847921629 0.000000000000 0.000000000000 +chr1 14470000 14471000 Eya1 673.0 170000 0.000000000000 0.585658029501 0.000000000000 0.000000000000 +chr1 14471000 14472000 Eya1 673.0 171000 0.000000000000 0.601961893812 0.000000000000 0.000000000000 +chr1 14472000 14473000 Eya1 673.0 172000 0.000000000000 0.591031149544 0.000000000000 0.000000000000 +chr1 14473000 14474000 Eya1 673.0 173000 0.000000000000 0.574110012150 0.000000000000 0.000000000000 +chr1 14474000 14475000 Eya1 673.0 174000 0.000000000000 0.594064541193 0.000000000000 0.000000000000 +chr1 14475000 14476000 Eya1 673.0 175000 0.000000000000 0.586742846341 0.000000000000 0.000000000000 +chr1 14476000 14477000 Eya1 673.0 176000 0.000297176820 0.580281241496 0.421231702882 0.200000000000 +chr1 14477000 14478000 Eya1 673.0 177000 0.000297176820 0.600664600573 0.449952046478 0.200000000000 +chr1 14478000 14479000 Eya1 673.0 178000 0.000594353640 0.611923543314 0.933862738240 0.400000000000 +chr1 14479000 14480000 Eya1 673.0 179000 0.000594353640 0.616982108456 0.951821637197 0.400000000000 +chr1 14480000 14481000 Eya1 673.0 180000 0.001485884101 0.367009687936 2.512422592521 1.000000000000 +chr1 14481000 14482000 Eya1 673.0 181000 0.001188707281 0.637219432588 2.020192860178 0.800000000000 +chr1 14482000 14483000 Eya1 673.0 182000 0.001188707281 0.649572741436 2.128805380321 0.800000000000 +chr1 14483000 14484000 Eya1 673.0 183000 0.001783060921 0.359231506903 3.093420317586 1.200000000000 +chr1 14484000 14485000 Eya1 673.0 184000 0.002080237741 0.375416393977 3.380127570538 1.400000000000 +chr1 14485000 14486000 Eya1 673.0 185000 0.001188707281 0.617559413959 1.903643274393 0.800000000000 +chr1 14486000 14487000 Eya1 673.0 186000 0.001188707281 0.647906480781 2.106158514412 0.800000000000 +chr1 14487000 14488000 Eya1 673.0 187000 0.001188707281 0.651241359569 2.140312436513 0.800000000000 +chr1 14488000 14489000 Eya1 673.0 188000 0.000594353640 0.647869186187 1.058710697124 0.400000000000 +chr1 14489000 14490000 Eya1 673.0 189000 0.000297176820 0.671654971880 0.575520059550 0.200000000000 +chr1 14490000 14491000 Eya1 673.0 190000 0.000297176820 0.671941112135 0.578885673960 0.200000000000 +chr1 14491000 14492000 Eya1 673.0 191000 0.002080237741 0.341250160004 3.849589730333 1.400000000000 +chr1 14492000 14493000 Eya1 673.0 192000 0.003268945022 0.068166431915 5.982878858272 2.200000000000 +chr1 14493000 14494000 Eya1 673.0 193000 0.002971768202 0.059322876246 5.892229182196 2.000000000000 +chr1 14494000 14495000 Eya1 673.0 194000 0.003268945022 0.062511655285 6.294126893758 2.200000000000 +chr1 14495000 14496000 Eya1 673.0 195000 0.003268945022 0.056441264815 6.680269651133 2.200000000000 +chr1 14496000 14497000 Eya1 673.0 196000 0.002971768202 0.056496760292 6.072972410121 2.000000000000 +chr1 14497000 14498000 Eya1 673.0 197000 0.002080237741 0.335210836347 3.937080406684 1.400000000000 +chr1 14498000 14499000 Eya1 673.0 198000 0.002971768202 0.083110512066 4.852424033528 2.000000000000 +chr1 14499000 14500000 Eya1 673.0 199000 0.003343239227 0.073447408129 5.830530441735 2.250000000000 +chr1 14500000 14501000 Eya1 673.0 200000 0.004457652303 1.000000000000 7.575723225668 3.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 18893000 18894000 Tfap2d 472.0 -200000 0.001412429379 0.880044890460 8.554173074049 0.666666666667 +chr1 18894000 18895000 Tfap2d 472.0 -199000 0.001059322034 0.852151439574 5.040852007510 0.500000000000 +chr1 18895000 18896000 Tfap2d 472.0 -198000 0.000847457627 0.820756603944 3.282415254892 0.400000000000 +chr1 18896000 18897000 Tfap2d 472.0 -197000 0.000847457627 0.814190727178 3.136530131373 0.400000000000 +chr1 18897000 18898000 Tfap2d 472.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 18898000 18899000 Tfap2d 472.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 18899000 18900000 Tfap2d 472.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 18900000 18901000 Tfap2d 472.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 18901000 18902000 Tfap2d 472.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 18902000 18903000 Tfap2d 472.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 18903000 18904000 Tfap2d 472.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 18904000 18905000 Tfap2d 472.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 18905000 18906000 Tfap2d 472.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 18906000 18907000 Tfap2d 472.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 18907000 18908000 Tfap2d 472.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 18908000 18909000 Tfap2d 472.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 18909000 18910000 Tfap2d 472.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 18910000 18911000 Tfap2d 472.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 18911000 18912000 Tfap2d 472.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 18912000 18913000 Tfap2d 472.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 18913000 18914000 Tfap2d 472.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 18914000 18915000 Tfap2d 472.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 18915000 18916000 Tfap2d 472.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 18916000 18917000 Tfap2d 472.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 18917000 18918000 Tfap2d 472.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 18918000 18919000 Tfap2d 472.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 18919000 18920000 Tfap2d 472.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 18920000 18921000 Tfap2d 472.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 18921000 18922000 Tfap2d 472.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 18922000 18923000 Tfap2d 472.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 18923000 18924000 Tfap2d 472.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 18924000 18925000 Tfap2d 472.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 18925000 18926000 Tfap2d 472.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 18926000 18927000 Tfap2d 472.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 18927000 18928000 Tfap2d 472.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 18928000 18929000 Tfap2d 472.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 18929000 18930000 Tfap2d 472.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 18930000 18931000 Tfap2d 472.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 18931000 18932000 Tfap2d 472.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 18932000 18933000 Tfap2d 472.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 18933000 18934000 Tfap2d 472.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000 +chr1 18934000 18935000 Tfap2d 472.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000 +chr1 18935000 18936000 Tfap2d 472.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000 +chr1 18936000 18937000 Tfap2d 472.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000 +chr1 18937000 18938000 Tfap2d 472.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000 +chr1 18938000 18939000 Tfap2d 472.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 18939000 18940000 Tfap2d 472.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 18940000 18941000 Tfap2d 472.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 18941000 18942000 Tfap2d 472.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 18942000 18943000 Tfap2d 472.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 18943000 18944000 Tfap2d 472.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 18944000 18945000 Tfap2d 472.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 18945000 18946000 Tfap2d 472.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 18946000 18947000 Tfap2d 472.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000 +chr1 18947000 18948000 Tfap2d 472.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000 +chr1 18948000 18949000 Tfap2d 472.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000 +chr1 18949000 18950000 Tfap2d 472.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000 +chr1 18950000 18951000 Tfap2d 472.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000 +chr1 18951000 18952000 Tfap2d 472.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000 +chr1 18952000 18953000 Tfap2d 472.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000 +chr1 18953000 18954000 Tfap2d 472.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000 +chr1 18954000 18955000 Tfap2d 472.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000 +chr1 18955000 18956000 Tfap2d 472.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000 +chr1 18956000 18957000 Tfap2d 472.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000 +chr1 18957000 18958000 Tfap2d 472.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000 +chr1 18958000 18959000 Tfap2d 472.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000 +chr1 18959000 18960000 Tfap2d 472.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000 +chr1 18960000 18961000 Tfap2d 472.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000 +chr1 18961000 18962000 Tfap2d 472.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000 +chr1 18962000 18963000 Tfap2d 472.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000 +chr1 18963000 18964000 Tfap2d 472.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000 +chr1 18964000 18965000 Tfap2d 472.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000 +chr1 18965000 18966000 Tfap2d 472.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000 +chr1 18966000 18967000 Tfap2d 472.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000 +chr1 18967000 18968000 Tfap2d 472.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000 +chr1 18968000 18969000 Tfap2d 472.0 -125000 0.000000000000 0.789042220648 0.000000000000 0.000000000000 +chr1 18969000 18970000 Tfap2d 472.0 -124000 0.000000000000 0.798137256530 0.000000000000 0.000000000000 +chr1 18970000 18971000 Tfap2d 472.0 -123000 0.000000000000 0.785510253584 0.000000000000 0.000000000000 +chr1 18971000 18972000 Tfap2d 472.0 -122000 0.000000000000 0.799644194656 0.000000000000 0.000000000000 +chr1 18972000 18973000 Tfap2d 472.0 -121000 0.000000000000 0.790961581141 0.000000000000 0.000000000000 +chr1 18973000 18974000 Tfap2d 472.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000 +chr1 18974000 18975000 Tfap2d 472.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000 +chr1 18975000 18976000 Tfap2d 472.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000 +chr1 18976000 18977000 Tfap2d 472.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000 +chr1 18977000 18978000 Tfap2d 472.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000 +chr1 18978000 18979000 Tfap2d 472.0 -115000 0.001271186441 0.757379810911 3.257165906583 0.600000000000 +chr1 18979000 18980000 Tfap2d 472.0 -114000 0.001271186441 0.773895809279 3.470750557945 0.600000000000 +chr1 18980000 18981000 Tfap2d 472.0 -113000 0.001271186441 0.780251801078 3.814698814531 0.600000000000 +chr1 18981000 18982000 Tfap2d 472.0 -112000 0.001271186441 0.809192563048 4.602517039860 0.600000000000 +chr1 18982000 18983000 Tfap2d 472.0 -111000 0.001271186441 0.805959066383 4.553027608970 0.600000000000 +chr1 18983000 18984000 Tfap2d 472.0 -110000 0.000000000000 0.826154588365 0.000000000000 0.000000000000 +chr1 18984000 18985000 Tfap2d 472.0 -109000 0.000000000000 0.796608508060 0.000000000000 0.000000000000 +chr1 18985000 18986000 Tfap2d 472.0 -108000 0.000000000000 0.785369993572 0.000000000000 0.000000000000 +chr1 18986000 18987000 Tfap2d 472.0 -107000 0.000000000000 0.763585636187 0.000000000000 0.000000000000 +chr1 18987000 18988000 Tfap2d 472.0 -106000 0.000000000000 0.796206503792 0.000000000000 0.000000000000 +chr1 18988000 18989000 Tfap2d 472.0 -105000 0.000000000000 0.801881199084 0.000000000000 0.000000000000 +chr1 18989000 18990000 Tfap2d 472.0 -104000 0.000000000000 0.830453698245 0.000000000000 0.000000000000 +chr1 18990000 18991000 Tfap2d 472.0 -103000 0.000000000000 0.843960603767 0.000000000000 0.000000000000 +chr1 18991000 18992000 Tfap2d 472.0 -102000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 18992000 18993000 Tfap2d 472.0 -101000 0.000000000000 0.853858772997 0.000000000000 0.000000000000 +chr1 18993000 18994000 Tfap2d 472.0 -100000 0.000000000000 0.828442819541 0.000000000000 0.000000000000 +chr1 18994000 18995000 Tfap2d 472.0 -99000 0.000000000000 0.815159530773 0.000000000000 0.000000000000 +chr1 18995000 18996000 Tfap2d 472.0 -98000 0.000000000000 0.803890742201 0.000000000000 0.000000000000 +chr1 18996000 18997000 Tfap2d 472.0 -97000 0.000000000000 0.793812954579 0.000000000000 0.000000000000 +chr1 18997000 18998000 Tfap2d 472.0 -96000 0.000000000000 0.776513211062 0.000000000000 0.000000000000 +chr1 18998000 18999000 Tfap2d 472.0 -95000 0.000000000000 0.769795672212 0.000000000000 0.000000000000 +chr1 18999000 19000000 Tfap2d 472.0 -94000 0.000423728814 0.745179566394 1.102686374757 0.200000000000 +chr1 19000000 19001000 Tfap2d 472.0 -93000 0.000423728814 0.740519396446 1.061231999455 0.200000000000 +chr1 19001000 19002000 Tfap2d 472.0 -92000 0.000423728814 0.723302632894 0.779800308873 0.200000000000 +chr1 19002000 19003000 Tfap2d 472.0 -91000 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0.364712806099 0.200000000000 +chr1 19176000 19177000 Tfap2d 472.0 83000 0.000423728814 0.455460847598 0.319329990793 0.200000000000 +chr1 19177000 19178000 Tfap2d 472.0 84000 0.000423728814 0.431883914707 0.300306076526 0.200000000000 +chr1 19178000 19179000 Tfap2d 472.0 85000 0.000423728814 0.408620507080 0.299668484002 0.200000000000 +chr1 19179000 19180000 Tfap2d 472.0 86000 0.000423728814 0.421643738980 0.329006657256 0.200000000000 +chr1 19180000 19181000 Tfap2d 472.0 87000 0.000847457627 0.383191453565 0.627306026275 0.400000000000 +chr1 19181000 19182000 Tfap2d 472.0 88000 0.000847457627 0.391467791454 0.623151681699 0.400000000000 +chr1 19182000 19183000 Tfap2d 472.0 89000 0.000847457627 0.402358700756 0.688506614142 0.400000000000 +chr1 19183000 19184000 Tfap2d 472.0 90000 0.000847457627 0.422972373487 0.693581601507 0.400000000000 +chr1 19184000 19185000 Tfap2d 472.0 91000 0.000423728814 0.415388228662 0.332886452773 0.200000000000 +chr1 19185000 19186000 Tfap2d 472.0 92000 0.000000000000 0.457521466073 0.000000000000 0.000000000000 +chr1 19186000 19187000 Tfap2d 472.0 93000 0.000423728814 0.481878108523 0.387757845880 0.200000000000 +chr1 19187000 19188000 Tfap2d 472.0 94000 0.001271186441 0.485654072445 1.066578256419 0.600000000000 +chr1 19188000 19189000 Tfap2d 472.0 95000 0.001694915254 0.470520014646 1.363708752551 0.800000000000 +chr1 19189000 19190000 Tfap2d 472.0 96000 0.001694915254 0.451356425790 1.325294422259 0.800000000000 +chr1 19190000 19191000 Tfap2d 472.0 97000 0.001694915254 0.458000704387 1.373662831110 0.800000000000 +chr1 19191000 19192000 Tfap2d 472.0 98000 0.001271186441 0.454705613751 1.005775695846 0.600000000000 +chr1 19192000 19193000 Tfap2d 472.0 99000 0.001271186441 0.466062200428 1.080182571018 0.600000000000 +chr1 19193000 19194000 Tfap2d 472.0 100000 0.000847457627 0.485559847885 0.804238495376 0.400000000000 +chr1 19194000 19195000 Tfap2d 472.0 101000 0.000847457627 0.476647654186 0.860633267502 0.400000000000 +chr1 19195000 19196000 Tfap2d 472.0 102000 0.000847457627 0.458905220217 0.837648996932 0.400000000000 +chr1 19196000 19197000 Tfap2d 472.0 103000 0.000847457627 0.494251471435 0.925533481613 0.400000000000 +chr1 19197000 19198000 Tfap2d 472.0 104000 0.001694915254 0.496762683299 1.764298198693 0.800000000000 +chr1 19198000 19199000 Tfap2d 472.0 105000 0.002118644068 0.509055896344 2.112931975945 1.000000000000 +chr1 19199000 19200000 Tfap2d 472.0 106000 0.002118644068 0.494608472741 2.063506666181 1.000000000000 +chr1 19200000 19201000 Tfap2d 472.0 107000 0.002118644068 0.499149741114 1.982357527016 1.000000000000 +chr1 19201000 19202000 Tfap2d 472.0 108000 0.002542372881 0.503477555567 2.320172973657 1.200000000000 +chr1 19202000 19203000 Tfap2d 472.0 109000 0.001271186441 0.499669178563 1.202930590359 0.600000000000 +chr1 19203000 19204000 Tfap2d 472.0 110000 0.000847457627 0.503445250814 0.830257976313 0.400000000000 +chr1 19204000 19205000 Tfap2d 472.0 111000 0.001271186441 0.472832134979 1.179475119064 0.600000000000 +chr1 19205000 19206000 Tfap2d 472.0 112000 0.001694915254 0.479967223270 1.613072639333 0.800000000000 +chr1 19206000 19207000 Tfap2d 472.0 113000 0.001271186441 0.490923249210 1.241734803255 0.600000000000 +chr1 19207000 19208000 Tfap2d 472.0 114000 0.000847457627 0.453380733495 0.815860439041 0.400000000000 +chr1 19208000 19209000 Tfap2d 472.0 115000 0.000847457627 0.469666167625 0.822996244685 0.400000000000 +chr1 19209000 19210000 Tfap2d 472.0 116000 0.000423728814 0.505935664500 0.473637100575 0.200000000000 +chr1 19210000 19211000 Tfap2d 472.0 117000 0.000000000000 0.523376482067 0.000000000000 0.000000000000 +chr1 19211000 19212000 Tfap2d 472.0 118000 0.000000000000 0.529451256365 0.000000000000 0.000000000000 +chr1 19212000 19213000 Tfap2d 472.0 119000 0.000000000000 0.533356831096 0.000000000000 0.000000000000 +chr1 19213000 19214000 Tfap2d 472.0 120000 0.000000000000 0.516584121708 0.000000000000 0.000000000000 +chr1 19214000 19215000 Tfap2d 472.0 121000 0.000000000000 0.535771528777 0.000000000000 0.000000000000 +chr1 19215000 19216000 Tfap2d 472.0 122000 0.000847457627 0.530490537983 0.953674702560 0.400000000000 +chr1 19216000 19217000 Tfap2d 472.0 123000 0.000847457627 0.530562527645 0.973405903461 0.400000000000 +chr1 19217000 19218000 Tfap2d 472.0 124000 0.000847457627 0.545553903451 1.034020922346 0.400000000000 +chr1 19218000 19219000 Tfap2d 472.0 125000 0.000847457627 0.564891705893 1.129150847963 0.400000000000 +chr1 19219000 19220000 Tfap2d 472.0 126000 0.001271186441 0.540351446443 1.579968536413 0.600000000000 +chr1 19220000 19221000 Tfap2d 472.0 127000 0.000847457627 0.544910167356 1.077434014837 0.400000000000 +chr1 19221000 19222000 Tfap2d 472.0 128000 0.000847457627 0.559785966334 1.129150847963 0.400000000000 +chr1 19222000 19223000 Tfap2d 472.0 129000 0.000847457627 0.550703059901 1.089913945607 0.400000000000 +chr1 19223000 19224000 Tfap2d 472.0 130000 0.000847457627 0.549227272107 1.019089212169 0.400000000000 +chr1 19224000 19225000 Tfap2d 472.0 131000 0.000423728814 0.561819843709 0.553505317542 0.200000000000 +chr1 19225000 19226000 Tfap2d 472.0 132000 0.000423728814 0.585853557394 0.566842795180 0.200000000000 +chr1 19226000 19227000 Tfap2d 472.0 133000 0.000423728814 0.595436468036 0.511390782207 0.200000000000 +chr1 19227000 19228000 Tfap2d 472.0 134000 0.001271186441 0.603093891321 1.597854972809 0.600000000000 +chr1 19228000 19229000 Tfap2d 472.0 135000 0.001694915254 0.604088556070 2.231523414735 0.800000000000 +chr1 19229000 19230000 Tfap2d 472.0 136000 0.002118644068 0.411260634766 2.556953911034 1.000000000000 +chr1 19230000 19231000 Tfap2d 472.0 137000 0.002542372881 0.432301751883 2.861024107679 1.200000000000 +chr1 19231000 19232000 Tfap2d 472.0 138000 0.002542372881 0.454889032857 3.183695998364 1.200000000000 +chr1 19232000 19233000 Tfap2d 472.0 139000 0.001694915254 0.585442994010 1.987941631835 0.800000000000 +chr1 19233000 19234000 Tfap2d 472.0 140000 0.001271186441 0.584686184662 1.339973315587 0.600000000000 +chr1 19234000 19235000 Tfap2d 472.0 141000 0.000847457627 0.604143773708 0.963439290036 0.400000000000 +chr1 19235000 19236000 Tfap2d 472.0 142000 0.000423728814 0.632888736121 0.538717007419 0.200000000000 +chr1 19236000 19237000 Tfap2d 472.0 143000 0.001271186441 0.631972051038 1.539751155194 0.600000000000 +chr1 19237000 19238000 Tfap2d 472.0 144000 0.001271186441 0.630242651353 1.749717221137 0.600000000000 +chr1 19238000 19239000 Tfap2d 472.0 145000 0.001271186441 0.654163481416 2.117157840635 0.600000000000 +chr1 19239000 19240000 Tfap2d 472.0 146000 0.001694915254 0.637809455886 2.601730063600 0.800000000000 +chr1 19240000 19241000 Tfap2d 472.0 147000 0.001271186441 0.621469775934 1.857155998658 0.600000000000 +chr1 19241000 19242000 Tfap2d 472.0 148000 0.000423728814 0.608829914540 0.641562981525 0.200000000000 +chr1 19242000 19243000 Tfap2d 472.0 149000 0.000423728814 0.611099504790 0.659550728811 0.200000000000 +chr1 19243000 19244000 Tfap2d 472.0 150000 0.000847457627 0.594707930687 1.227337877296 0.400000000000 +chr1 19244000 19245000 Tfap2d 472.0 151000 0.001271186441 0.605065312757 1.942346641449 0.600000000000 +chr1 19245000 19246000 Tfap2d 472.0 152000 0.001271186441 0.593714719997 1.881918078824 0.600000000000 +chr1 19246000 19247000 Tfap2d 472.0 153000 0.002118644068 0.403579514801 3.164660446662 1.000000000000 +chr1 19247000 19248000 Tfap2d 472.0 154000 0.002118644068 0.393839975386 3.222462464392 1.000000000000 +chr1 19248000 19249000 Tfap2d 472.0 155000 0.001694915254 0.609612095406 2.498121343489 0.800000000000 +chr1 19249000 19250000 Tfap2d 472.0 156000 0.000847457627 0.613314445827 1.249060671745 0.400000000000 +chr1 19250000 19251000 Tfap2d 472.0 157000 0.000847457627 0.602751520183 1.171318305746 0.400000000000 +chr1 19251000 19252000 Tfap2d 472.0 158000 0.000000000000 0.585293824856 0.000000000000 0.000000000000 +chr1 19252000 19253000 Tfap2d 472.0 159000 0.000847457627 0.573814787091 1.098395766262 0.400000000000 +chr1 19253000 19254000 Tfap2d 472.0 160000 0.000847457627 0.559100492248 1.081562114542 0.400000000000 +chr1 19254000 19255000 Tfap2d 472.0 161000 0.001694915254 0.533506885425 2.038178424337 0.800000000000 +chr1 19255000 19256000 Tfap2d 472.0 162000 0.001694915254 0.591476571829 2.304389486014 0.800000000000 +chr1 19256000 19257000 Tfap2d 472.0 163000 0.002542372881 0.406268726703 3.513954917238 1.200000000000 +chr1 19257000 19258000 Tfap2d 472.0 164000 0.002118644068 0.395075253578 3.055061815685 1.000000000000 +chr1 19258000 19259000 Tfap2d 472.0 165000 0.002118644068 0.379129640982 3.252162579500 1.000000000000 +chr1 19259000 19260000 Tfap2d 472.0 166000 0.001694915254 0.653063136379 2.822877120847 0.800000000000 +chr1 19260000 19261000 Tfap2d 472.0 167000 0.001694915254 0.616215444951 2.701317818024 0.800000000000 +chr1 19261000 19262000 Tfap2d 472.0 168000 0.000847457627 0.616137376589 1.312966101957 0.400000000000 +chr1 19262000 19263000 Tfap2d 472.0 169000 0.000423728814 0.600847921629 0.593041411154 0.200000000000 +chr1 19263000 19264000 Tfap2d 472.0 170000 0.000423728814 0.585658029501 0.573755512251 0.200000000000 +chr1 19264000 19265000 Tfap2d 472.0 171000 0.000000000000 0.601961893812 0.000000000000 0.000000000000 +chr1 19265000 19266000 Tfap2d 472.0 172000 0.000000000000 0.591031149544 0.000000000000 0.000000000000 +chr1 19266000 19267000 Tfap2d 472.0 173000 0.000000000000 0.574110012150 0.000000000000 0.000000000000 +chr1 19267000 19268000 Tfap2d 472.0 174000 0.000000000000 0.594064541193 0.000000000000 0.000000000000 +chr1 19268000 19269000 Tfap2d 472.0 175000 0.000423728814 0.586742846341 0.608378689139 0.200000000000 +chr1 19269000 19270000 Tfap2d 472.0 176000 0.000423728814 0.580281241496 0.600612152627 0.200000000000 +chr1 19270000 19271000 Tfap2d 472.0 177000 0.000423728814 0.600664600573 0.641562981525 0.200000000000 +chr1 19271000 19272000 Tfap2d 472.0 178000 0.000423728814 0.611923543314 0.665772905546 0.200000000000 +chr1 19272000 19273000 Tfap2d 472.0 179000 0.000423728814 0.616982108456 0.678576230756 0.200000000000 +chr1 19273000 19274000 Tfap2d 472.0 180000 0.000000000000 0.632990312064 0.000000000000 0.000000000000 +chr1 19274000 19275000 Tfap2d 472.0 181000 0.000000000000 0.637219432588 0.000000000000 0.000000000000 +chr1 19275000 19276000 Tfap2d 472.0 182000 0.000423728814 0.649572741436 0.758837934828 0.200000000000 +chr1 19276000 19277000 Tfap2d 472.0 183000 0.000423728814 0.640768493097 0.735124249200 0.200000000000 +chr1 19277000 19278000 Tfap2d 472.0 184000 0.000423728814 0.624583606023 0.688506614701 0.200000000000 +chr1 19278000 19279000 Tfap2d 472.0 185000 0.000423728814 0.617559413959 0.678576230756 0.200000000000 +chr1 19279000 19280000 Tfap2d 472.0 186000 0.000423728814 0.647906480781 0.750765190784 0.200000000000 +chr1 19280000 19281000 Tfap2d 472.0 187000 0.000000000000 0.651241359569 0.000000000000 0.000000000000 +chr1 19281000 19282000 Tfap2d 472.0 188000 0.000000000000 0.647869186187 0.000000000000 0.000000000000 +chr1 19282000 19283000 Tfap2d 472.0 189000 0.000000000000 0.671654971880 0.000000000000 0.000000000000 +chr1 19283000 19284000 Tfap2d 472.0 190000 0.000000000000 0.671941112135 0.000000000000 0.000000000000 +chr1 19284000 19285000 Tfap2d 472.0 191000 0.000000000000 0.658749839996 0.000000000000 0.000000000000 +chr1 19285000 19286000 Tfap2d 472.0 192000 0.000000000000 0.655383997647 0.000000000000 0.000000000000 +chr1 19286000 19287000 Tfap2d 472.0 193000 0.000000000000 0.676994533785 0.000000000000 0.000000000000 +chr1 19287000 19288000 Tfap2d 472.0 194000 0.000000000000 0.669325066593 0.000000000000 0.000000000000 +chr1 19288000 19289000 Tfap2d 472.0 195000 0.000000000000 0.685162890895 0.000000000000 0.000000000000 +chr1 19289000 19290000 Tfap2d 472.0 196000 0.000000000000 0.685254654751 0.000000000000 0.000000000000 +chr1 19290000 19291000 Tfap2d 472.0 197000 0.000000000000 0.664789163653 0.000000000000 0.000000000000 +chr1 19291000 19292000 Tfap2d 472.0 198000 0.000000000000 0.623323575813 0.000000000000 0.000000000000 +chr1 19292000 19293000 Tfap2d 472.0 199000 0.000000000000 0.643728679260 0.000000000000 0.000000000000 +chr1 19293000 19294000 Tfap2d 472.0 200000 0.000000000000 0.637624930855 0.000000000000 0.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 4287000 4288000 Sox17 810.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 4288000 4289000 Sox17 810.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 4289000 4290000 Sox17 810.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 4290000 4291000 Sox17 810.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 4291000 4292000 Sox17 810.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 4292000 4293000 Sox17 810.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 4293000 4294000 Sox17 810.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 4294000 4295000 Sox17 810.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 4295000 4296000 Sox17 810.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 4296000 4297000 Sox17 810.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 4297000 4298000 Sox17 810.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 4298000 4299000 Sox17 810.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 4299000 4300000 Sox17 810.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 4300000 4301000 Sox17 810.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 4301000 4302000 Sox17 810.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 4302000 4303000 Sox17 810.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 4303000 4304000 Sox17 810.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 4304000 4305000 Sox17 810.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 4305000 4306000 Sox17 810.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 4306000 4307000 Sox17 810.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 4307000 4308000 Sox17 810.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 4308000 4309000 Sox17 810.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 4309000 4310000 Sox17 810.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 4310000 4311000 Sox17 810.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 4311000 4312000 Sox17 810.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 4312000 4313000 Sox17 810.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 4313000 4314000 Sox17 810.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 4314000 4315000 Sox17 810.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 4315000 4316000 Sox17 810.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 4316000 4317000 Sox17 810.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 4317000 4318000 Sox17 810.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 4318000 4319000 Sox17 810.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 4319000 4320000 Sox17 810.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 4320000 4321000 Sox17 810.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 4321000 4322000 Sox17 810.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 4322000 4323000 Sox17 810.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 4323000 4324000 Sox17 810.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 4324000 4325000 Sox17 810.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 4325000 4326000 Sox17 810.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 4326000 4327000 Sox17 810.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 4327000 4328000 Sox17 810.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000 +chr1 4328000 4329000 Sox17 810.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000 +chr1 4329000 4330000 Sox17 810.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000 +chr1 4330000 4331000 Sox17 810.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000 +chr1 4331000 4332000 Sox17 810.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000 +chr1 4332000 4333000 Sox17 810.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 4333000 4334000 Sox17 810.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 4334000 4335000 Sox17 810.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 4335000 4336000 Sox17 810.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 4336000 4337000 Sox17 810.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 4337000 4338000 Sox17 810.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 4338000 4339000 Sox17 810.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 4339000 4340000 Sox17 810.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 4340000 4341000 Sox17 810.0 -147000 0.000000000000 0.855607168087 0.000000000000 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 14100000 14101000 Eya1 832.0 -200000 0.000400641026 0.880044890460 2.426424093120 0.333333333333 +chr1 14101000 14102000 Eya1 832.0 -199000 0.000300480769 0.852151439574 1.429857059822 0.250000000000 +chr1 14102000 14103000 Eya1 832.0 -198000 0.000240384615 0.820756603944 0.931069711724 0.200000000000 +chr1 14103000 14104000 Eya1 832.0 -197000 0.000240384615 0.814190727178 0.889688835341 0.200000000000 +chr1 14104000 14105000 Eya1 832.0 -196000 0.000240384615 0.827190062074 0.976487746811 0.200000000000 +chr1 14105000 14106000 Eya1 832.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 14106000 14107000 Eya1 832.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 14107000 14108000 Eya1 832.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 14108000 14109000 Eya1 832.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 14109000 14110000 Eya1 832.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 14110000 14111000 Eya1 832.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 14111000 14112000 Eya1 832.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 14112000 14113000 Eya1 832.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 14113000 14114000 Eya1 832.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 14114000 14115000 Eya1 832.0 -186000 0.000000000000 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185000 0.000961538462 0.617559413959 1.539846062099 0.800000000000 +chr1 14486000 14487000 Eya1 832.0 186000 0.000961538462 0.647906480781 1.703659471393 0.800000000000 +chr1 14487000 14488000 Eya1 832.0 187000 0.000961538462 0.651241359569 1.731286381939 0.800000000000 +chr1 14488000 14489000 Eya1 832.0 188000 0.001201923077 0.352130813813 2.140962437394 1.000000000000 +chr1 14489000 14490000 Eya1 832.0 189000 0.001442307692 0.328345028120 2.793209135173 1.200000000000 +chr1 14490000 14491000 Eya1 832.0 190000 0.000721153846 0.671941112135 1.404771845823 0.600000000000 +chr1 14491000 14492000 Eya1 832.0 191000 0.001442307692 0.341250160004 2.669066506024 1.200000000000 +chr1 14492000 14493000 Eya1 832.0 192000 0.002403846154 0.068166431915 4.399560174407 2.000000000000 +chr1 14493000 14494000 Eya1 832.0 193000 0.002163461538 0.323005466215 4.289571172663 1.800000000000 +chr1 14494000 14495000 Eya1 832.0 194000 0.001682692308 0.330674933407 3.239907320421 1.400000000000 +chr1 14495000 14496000 Eya1 832.0 195000 0.002163461538 0.314837109105 4.421153111551 1.800000000000 +chr1 14496000 14497000 Eya1 832.0 196000 0.001682692308 0.314745345249 3.438674642317 1.400000000000 +chr1 14497000 14498000 Eya1 832.0 197000 0.001442307692 0.335210836347 2.729727108893 1.200000000000 +chr1 14498000 14499000 Eya1 832.0 198000 0.002644230769 0.083110512066 4.317607586564 2.200000000000 +chr1 14499000 14500000 Eya1 832.0 199000 0.003305288462 0.073447408129 5.764345200343 2.750000000000 +chr1 14500000 14501000 Eya1 832.0 200000 0.003605769231 1.000000000000 6.127958811148 3.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 18893000 18894000 Tfap2d 800.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 18894000 18895000 Tfap2d 800.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 18895000 18896000 Tfap2d 800.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 18896000 18897000 Tfap2d 800.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 18897000 18898000 Tfap2d 800.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 18898000 18899000 Tfap2d 800.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 18899000 18900000 Tfap2d 800.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 18900000 18901000 Tfap2d 800.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 18901000 18902000 Tfap2d 800.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 18902000 18903000 Tfap2d 800.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 18903000 18904000 Tfap2d 800.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 18904000 18905000 Tfap2d 800.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 18905000 18906000 Tfap2d 800.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 18906000 18907000 Tfap2d 800.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 18907000 18908000 Tfap2d 800.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 18908000 18909000 Tfap2d 800.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 18909000 18910000 Tfap2d 800.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 18910000 18911000 Tfap2d 800.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 18911000 18912000 Tfap2d 800.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 18912000 18913000 Tfap2d 800.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 18913000 18914000 Tfap2d 800.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 18914000 18915000 Tfap2d 800.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 18915000 18916000 Tfap2d 800.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 18916000 18917000 Tfap2d 800.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 18917000 18918000 Tfap2d 800.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 18918000 18919000 Tfap2d 800.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 18919000 18920000 Tfap2d 800.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 18920000 18921000 Tfap2d 800.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 18921000 18922000 Tfap2d 800.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 18922000 18923000 Tfap2d 800.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 18923000 18924000 Tfap2d 800.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 18924000 18925000 Tfap2d 800.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 18925000 18926000 Tfap2d 800.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 18926000 18927000 Tfap2d 800.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 18927000 18928000 Tfap2d 800.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 18928000 18929000 Tfap2d 800.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 18929000 18930000 Tfap2d 800.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 18930000 18931000 Tfap2d 800.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 18931000 18932000 Tfap2d 800.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 18932000 18933000 Tfap2d 800.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 18933000 18934000 Tfap2d 800.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000 +chr1 18934000 18935000 Tfap2d 800.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000 +chr1 18935000 18936000 Tfap2d 800.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000 +chr1 18936000 18937000 Tfap2d 800.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000 +chr1 18937000 18938000 Tfap2d 800.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000 +chr1 18938000 18939000 Tfap2d 800.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 18939000 18940000 Tfap2d 800.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 18940000 18941000 Tfap2d 800.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 18941000 18942000 Tfap2d 800.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 18942000 18943000 Tfap2d 800.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 18943000 18944000 Tfap2d 800.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 18944000 18945000 Tfap2d 800.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 18945000 18946000 Tfap2d 800.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 18946000 18947000 Tfap2d 800.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000 +chr1 18947000 18948000 Tfap2d 800.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000 +chr1 18948000 18949000 Tfap2d 800.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000 +chr1 18949000 18950000 Tfap2d 800.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000 +chr1 18950000 18951000 Tfap2d 800.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000 +chr1 18951000 18952000 Tfap2d 800.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000 +chr1 18952000 18953000 Tfap2d 800.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000 +chr1 18953000 18954000 Tfap2d 800.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000 +chr1 18954000 18955000 Tfap2d 800.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000 +chr1 18955000 18956000 Tfap2d 800.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000 +chr1 18956000 18957000 Tfap2d 800.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000 +chr1 18957000 18958000 Tfap2d 800.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000 +chr1 18958000 18959000 Tfap2d 800.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000 +chr1 18959000 18960000 Tfap2d 800.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000 +chr1 18960000 18961000 Tfap2d 800.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000 +chr1 18961000 18962000 Tfap2d 800.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000 +chr1 18962000 18963000 Tfap2d 800.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000 +chr1 18963000 18964000 Tfap2d 800.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000 +chr1 18964000 18965000 Tfap2d 800.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000 +chr1 18965000 18966000 Tfap2d 800.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000 +chr1 18966000 18967000 Tfap2d 800.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000 +chr1 18967000 18968000 Tfap2d 800.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000 +chr1 18968000 18969000 Tfap2d 800.0 -125000 0.000000000000 0.789042220648 0.000000000000 0.000000000000 +chr1 18969000 18970000 Tfap2d 800.0 -124000 0.000000000000 0.798137256530 0.000000000000 0.000000000000 +chr1 18970000 18971000 Tfap2d 800.0 -123000 0.000000000000 0.785510253584 0.000000000000 0.000000000000 +chr1 18971000 18972000 Tfap2d 800.0 -122000 0.000000000000 0.799644194656 0.000000000000 0.000000000000 +chr1 18972000 18973000 Tfap2d 800.0 -121000 0.000000000000 0.790961581141 0.000000000000 0.000000000000 +chr1 18973000 18974000 Tfap2d 800.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000 +chr1 18974000 18975000 Tfap2d 800.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000 +chr1 18975000 18976000 Tfap2d 800.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000 +chr1 18976000 18977000 Tfap2d 800.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000 +chr1 18977000 18978000 Tfap2d 800.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000 +chr1 18978000 18979000 Tfap2d 800.0 -115000 0.000000000000 0.757379810911 0.000000000000 0.000000000000 +chr1 18979000 18980000 Tfap2d 800.0 -114000 0.000000000000 0.773895809279 0.000000000000 0.000000000000 +chr1 18980000 18981000 Tfap2d 800.0 -113000 0.000000000000 0.780251801078 0.000000000000 0.000000000000 +chr1 18981000 18982000 Tfap2d 800.0 -112000 0.000000000000 0.809192563048 0.000000000000 0.000000000000 +chr1 18982000 18983000 Tfap2d 800.0 -111000 0.000000000000 0.805959066383 0.000000000000 0.000000000000 +chr1 18983000 18984000 Tfap2d 800.0 -110000 0.000000000000 0.826154588365 0.000000000000 0.000000000000 +chr1 18984000 18985000 Tfap2d 800.0 -109000 0.000000000000 0.796608508060 0.000000000000 0.000000000000 +chr1 18985000 18986000 Tfap2d 800.0 -108000 0.000000000000 0.785369993572 0.000000000000 0.000000000000 +chr1 18986000 18987000 Tfap2d 800.0 -107000 0.000500000000 0.763585636187 1.387914584417 0.400000000000 +chr1 18987000 18988000 Tfap2d 800.0 -106000 0.000500000000 0.796206503792 1.682320705695 0.400000000000 +chr1 18988000 18989000 Tfap2d 800.0 -105000 0.000500000000 0.801881199084 1.734893228113 0.400000000000 +chr1 18989000 18990000 Tfap2d 800.0 -104000 0.000500000000 0.830453698245 2.081871876625 0.400000000000 +chr1 18990000 18991000 Tfap2d 800.0 -103000 0.000500000000 0.843960603767 2.281503428260 0.400000000000 +chr1 18991000 18992000 Tfap2d 800.0 -102000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 18992000 18993000 Tfap2d 800.0 -101000 0.000000000000 0.853858772997 0.000000000000 0.000000000000 +chr1 18993000 18994000 Tfap2d 800.0 -100000 0.000250000000 0.828442819541 1.028084877240 0.200000000000 +chr1 18994000 18995000 Tfap2d 800.0 -99000 0.000250000000 0.815159530773 0.946305397749 0.200000000000 +chr1 18995000 18996000 Tfap2d 800.0 -98000 0.000250000000 0.803890742201 0.885902925125 0.200000000000 +chr1 18996000 18997000 Tfap2d 800.0 -97000 0.000250000000 0.793812954579 0.832748749263 0.200000000000 +chr1 18997000 18998000 Tfap2d 800.0 -96000 0.000250000000 0.776513211062 0.763989677803 0.200000000000 +chr1 18998000 18999000 Tfap2d 800.0 -95000 0.000000000000 0.769795672212 0.000000000000 0.000000000000 +chr1 18999000 19000000 Tfap2d 800.0 -94000 0.000000000000 0.745179566394 0.000000000000 0.000000000000 +chr1 19000000 19001000 Tfap2d 800.0 -93000 0.000000000000 0.740519396446 0.000000000000 0.000000000000 +chr1 19001000 19002000 Tfap2d 800.0 -92000 0.000000000000 0.723302632894 0.000000000000 0.000000000000 +chr1 19002000 19003000 Tfap2d 800.0 -91000 0.000000000000 0.723801019412 0.000000000000 0.000000000000 +chr1 19003000 19004000 Tfap2d 800.0 -90000 0.000000000000 0.727642253997 0.000000000000 0.000000000000 +chr1 19004000 19005000 Tfap2d 800.0 -89000 0.000000000000 0.754315244689 0.000000000000 0.000000000000 +chr1 19005000 19006000 Tfap2d 800.0 -88000 0.000000000000 0.748521601906 0.000000000000 0.000000000000 +chr1 19006000 19007000 Tfap2d 800.0 -87000 0.000000000000 0.773106724449 0.000000000000 0.000000000000 +chr1 19007000 19008000 Tfap2d 800.0 -86000 0.000000000000 0.763860606499 0.000000000000 0.000000000000 +chr1 19008000 19009000 Tfap2d 800.0 -85000 0.000000000000 0.758432715512 0.000000000000 0.000000000000 +chr1 19009000 19010000 Tfap2d 800.0 -84000 0.000000000000 0.763116447672 0.000000000000 0.000000000000 +chr1 19010000 19011000 Tfap2d 800.0 -83000 0.000000000000 0.774521391995 0.000000000000 0.000000000000 +chr1 19011000 19012000 Tfap2d 800.0 -82000 0.000000000000 0.783854637009 0.000000000000 0.000000000000 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19032000 Tfap2d 800.0 -62000 0.000000000000 0.714104264339 0.000000000000 0.000000000000 +chr1 19032000 19033000 Tfap2d 800.0 -61000 0.000000000000 0.719520193233 0.000000000000 0.000000000000 +chr1 19033000 19034000 Tfap2d 800.0 -60000 0.000000000000 0.706118755048 0.000000000000 0.000000000000 +chr1 19034000 19035000 Tfap2d 800.0 -59000 0.000000000000 0.694795175639 0.000000000000 0.000000000000 +chr1 19035000 19036000 Tfap2d 800.0 -58000 0.000000000000 0.677279626754 0.000000000000 0.000000000000 +chr1 19036000 19037000 Tfap2d 800.0 -57000 0.000000000000 0.660669632705 0.000000000000 0.000000000000 +chr1 19037000 19038000 Tfap2d 800.0 -56000 0.000000000000 0.654051782916 0.000000000000 0.000000000000 +chr1 19038000 19039000 Tfap2d 800.0 -55000 0.000000000000 0.645975994037 0.000000000000 0.000000000000 +chr1 19039000 19040000 Tfap2d 800.0 -54000 0.000000000000 0.633180473855 0.000000000000 0.000000000000 +chr1 19040000 19041000 Tfap2d 800.0 -53000 0.000000000000 0.617831075012 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0.000000000000 +chr1 19060000 19061000 Tfap2d 800.0 -33000 0.000000000000 0.603336690823 0.000000000000 0.000000000000 +chr1 19061000 19062000 Tfap2d 800.0 -32000 0.000000000000 0.605799634708 0.000000000000 0.000000000000 +chr1 19062000 19063000 Tfap2d 800.0 -31000 0.000000000000 0.585452191966 0.000000000000 0.000000000000 +chr1 19063000 19064000 Tfap2d 800.0 -30000 0.000000000000 0.594735266795 0.000000000000 0.000000000000 +chr1 19064000 19065000 Tfap2d 800.0 -29000 0.000000000000 0.617102861194 0.000000000000 0.000000000000 +chr1 19065000 19066000 Tfap2d 800.0 -28000 0.000000000000 0.632283362854 0.000000000000 0.000000000000 +chr1 19066000 19067000 Tfap2d 800.0 -27000 0.000000000000 0.629836005199 0.000000000000 0.000000000000 +chr1 19067000 19068000 Tfap2d 800.0 -26000 0.000000000000 0.639196587496 0.000000000000 0.000000000000 +chr1 19068000 19069000 Tfap2d 800.0 -25000 0.000000000000 0.592425075108 0.000000000000 0.000000000000 +chr1 19069000 19070000 Tfap2d 800.0 -24000 0.000000000000 0.564111214304 0.000000000000 0.000000000000 +chr1 19070000 19071000 Tfap2d 800.0 -23000 0.000000000000 0.524123121640 0.000000000000 0.000000000000 +chr1 19071000 19072000 Tfap2d 800.0 -22000 0.000000000000 0.508416731205 0.000000000000 0.000000000000 +chr1 19072000 19073000 Tfap2d 800.0 -21000 0.000000000000 0.504132294917 0.000000000000 0.000000000000 +chr1 19073000 19074000 Tfap2d 800.0 -20000 0.000000000000 0.523809742820 0.000000000000 0.000000000000 +chr1 19074000 19075000 Tfap2d 800.0 -19000 0.000000000000 0.518005863035 0.000000000000 0.000000000000 +chr1 19075000 19076000 Tfap2d 800.0 -18000 0.000000000000 0.521144510602 0.000000000000 0.000000000000 +chr1 19076000 19077000 Tfap2d 800.0 -17000 0.000000000000 0.564416733220 0.000000000000 0.000000000000 +chr1 19077000 19078000 Tfap2d 800.0 -16000 0.001750000000 0.479773922990 1.048424685505 1.400000000000 +chr1 19078000 19079000 Tfap2d 800.0 -15000 0.003750000000 0.194792725125 2.095844170045 3.000000000000 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0.111345010622 2.607683457332 12.200000000000 +chr1 19089000 19090000 Tfap2d 800.0 -4000 0.030250000000 0.070053372377 3.038679093748 24.200000000000 +chr1 19090000 19091000 Tfap2d 800.0 -3000 0.048500000000 0.116001476304 2.250672297336 38.800000000000 +chr1 19091000 19092000 Tfap2d 800.0 -2000 0.073250000000 0.338737028716 1.094984444422 58.600000000000 +chr1 19092000 19093000 Tfap2d 800.0 -1000 0.076750000000 0.374378926737 1.003942141175 61.400000000000 +chr1 19093000 19094000 Tfap2d 800.0 0 0.079750000000 0.404870799436 1.002478777496 63.800000000000 +chr1 19094000 19095000 Tfap2d 800.0 1000 0.067250000000 0.446889499477 0.859426103017 53.800000000000 +chr1 19095000 19096000 Tfap2d 800.0 2000 0.051250000000 0.556122045330 0.749137676625 41.000000000000 +chr1 19096000 19097000 Tfap2d 800.0 3000 0.025000000000 0.369438523049 1.008414567688 20.000000000000 +chr1 19097000 19098000 Tfap2d 800.0 4000 0.020500000000 0.283239136753 1.310408702739 16.400000000000 +chr1 19098000 19099000 Tfap2d 800.0 5000 0.013500000000 0.374325768927 1.114735560201 10.800000000000 +chr1 19099000 19100000 Tfap2d 800.0 6000 0.010250000000 0.414401612828 0.979704411769 8.200000000000 +chr1 19100000 19101000 Tfap2d 800.0 7000 0.011500000000 0.329063377508 1.204226422500 9.200000000000 +chr1 19101000 19102000 Tfap2d 800.0 8000 0.011500000000 0.293232494412 1.320001464545 9.200000000000 +chr1 19102000 19103000 Tfap2d 800.0 9000 0.011750000000 0.261465466047 1.468086693474 9.400000000000 +chr1 19103000 19104000 Tfap2d 800.0 10000 0.010750000000 0.272164293758 1.483355271397 8.600000000000 +chr1 19104000 19105000 Tfap2d 800.0 11000 0.010250000000 0.226518323948 1.600689111498 8.200000000000 +chr1 19105000 19106000 Tfap2d 800.0 12000 0.008250000000 0.318572090835 1.385814863859 6.600000000000 +chr1 19106000 19107000 Tfap2d 800.0 13000 0.005750000000 0.456960792050 1.070610466834 4.600000000000 +chr1 19107000 19108000 Tfap2d 800.0 14000 0.005250000000 0.423473421595 1.081491883198 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0.225115312719 0.162646240224 0.400000000000 +chr1 19118000 19119000 Tfap2d 800.0 25000 0.000000000000 0.221629958422 0.000000000000 0.000000000000 +chr1 19119000 19120000 Tfap2d 800.0 26000 0.000000000000 0.253083049210 0.000000000000 0.000000000000 +chr1 19120000 19121000 Tfap2d 800.0 27000 0.000750000000 0.245782528167 0.294604510589 0.600000000000 +chr1 19121000 19122000 Tfap2d 800.0 28000 0.000750000000 0.257054437971 0.283247874151 0.600000000000 +chr1 19122000 19123000 Tfap2d 800.0 29000 0.001250000000 0.730150582959 0.496866795945 1.000000000000 +chr1 19123000 19124000 Tfap2d 800.0 30000 0.001750000000 0.732642811477 0.706574697058 1.400000000000 +chr1 19124000 19125000 Tfap2d 800.0 31000 0.002250000000 0.758317068786 0.905161684870 1.800000000000 +chr1 19125000 19126000 Tfap2d 800.0 32000 0.002750000000 0.480737541697 1.153682147360 2.200000000000 +chr1 19126000 19127000 Tfap2d 800.0 33000 0.003000000000 0.484322511884 1.279511523854 2.400000000000 +chr1 19127000 19128000 Tfap2d 800.0 34000 0.002500000000 0.481543605756 1.111814085462 2.000000000000 +chr1 19128000 19129000 Tfap2d 800.0 35000 0.002750000000 0.449902561688 1.293818679354 2.200000000000 +chr1 19129000 19130000 Tfap2d 800.0 36000 0.002250000000 0.731093851644 1.087770500930 1.800000000000 +chr1 19130000 19131000 Tfap2d 800.0 37000 0.001250000000 0.743077286604 0.619604724633 1.000000000000 +chr1 19131000 19132000 Tfap2d 800.0 38000 0.001000000000 0.281762440079 0.507773628084 0.800000000000 +chr1 19132000 19133000 Tfap2d 800.0 39000 0.001500000000 0.722688489844 0.766333205611 1.200000000000 +chr1 19133000 19134000 Tfap2d 800.0 40000 0.002000000000 0.741317064321 0.961326118464 1.600000000000 +chr1 19134000 19135000 Tfap2d 800.0 41000 0.002250000000 0.735204850266 1.100549008579 1.800000000000 +chr1 19135000 19136000 Tfap2d 800.0 42000 0.002500000000 0.430167489874 1.206882246590 2.000000000000 +chr1 19136000 19137000 Tfap2d 800.0 43000 0.003500000000 0.432759024319 1.763764372185 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0.003750000000 0.070033494126 3.479451601239 3.000000000000 +chr1 19205000 19206000 Tfap2d 800.0 112000 0.003750000000 0.066008586110 3.568923214524 3.000000000000 +chr1 19206000 19207000 Tfap2d 800.0 113000 0.004000000000 0.063559023410 3.907325514242 3.200000000000 +chr1 19207000 19208000 Tfap2d 800.0 114000 0.003000000000 0.194024901725 2.888145954204 2.400000000000 +chr1 19208000 19209000 Tfap2d 800.0 115000 0.002250000000 0.530333832375 2.185055029640 1.800000000000 +chr1 19209000 19210000 Tfap2d 800.0 116000 0.002000000000 0.494064335500 2.235567114714 1.600000000000 +chr1 19210000 19211000 Tfap2d 800.0 117000 0.003250000000 0.153296595403 3.707443066693 2.600000000000 +chr1 19211000 19212000 Tfap2d 800.0 118000 0.002750000000 0.150599678767 3.180637588552 2.200000000000 +chr1 19212000 19213000 Tfap2d 800.0 119000 0.003000000000 0.158720896687 3.387452543582 2.400000000000 +chr1 19213000 19214000 Tfap2d 800.0 120000 0.003250000000 0.159014735445 3.620646740040 2.600000000000 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0.038045805086 5.411363716616 3.600000000000 +chr1 19224000 19225000 Tfap2d 800.0 131000 0.003750000000 0.026250942062 4.898522060247 3.000000000000 +chr1 19225000 19226000 Tfap2d 800.0 132000 0.002750000000 0.124311097303 3.678809740720 2.200000000000 +chr1 19226000 19227000 Tfap2d 800.0 133000 0.003000000000 0.151641641426 3.620646738024 2.400000000000 +chr1 19227000 19228000 Tfap2d 800.0 134000 0.003250000000 0.143582745335 4.085182547149 2.600000000000 +chr1 19228000 19229000 Tfap2d 800.0 135000 0.002000000000 0.395911443930 2.633197629387 1.600000000000 +chr1 19229000 19230000 Tfap2d 800.0 136000 0.003250000000 0.150842735995 3.922367299526 2.600000000000 +chr1 19230000 19231000 Tfap2d 800.0 137000 0.003250000000 0.164772494749 3.657342484316 2.600000000000 +chr1 19231000 19232000 Tfap2d 800.0 138000 0.003500000000 0.130463229278 4.382888157748 2.800000000000 +chr1 19232000 19233000 Tfap2d 800.0 139000 0.003750000000 0.057301877416 4.398320860434 3.000000000000 +chr1 19233000 19234000 Tfap2d 800.0 140000 0.003500000000 0.179226643902 3.689393195582 2.800000000000 +chr1 19234000 19235000 Tfap2d 800.0 141000 0.002750000000 0.164399719481 3.126360496166 2.200000000000 +chr1 19235000 19236000 Tfap2d 800.0 142000 0.002500000000 0.144239961205 3.178430343770 2.000000000000 +chr1 19236000 19237000 Tfap2d 800.0 143000 0.002250000000 0.368027948962 2.725359544693 1.800000000000 +chr1 19237000 19238000 Tfap2d 800.0 144000 0.001250000000 0.369757348647 1.720555267451 1.000000000000 +chr1 19238000 19239000 Tfap2d 800.0 145000 0.000750000000 0.654163481416 1.249123125975 0.600000000000 +chr1 19239000 19240000 Tfap2d 800.0 146000 0.000500000000 0.637809455886 0.767510368762 0.400000000000 +chr1 19240000 19241000 Tfap2d 800.0 147000 0.000500000000 0.621469775934 0.730481359472 0.400000000000 +chr1 19241000 19242000 Tfap2d 800.0 148000 0.000750000000 0.608829914540 1.135566477299 0.600000000000 +chr1 19242000 19243000 Tfap2d 800.0 149000 0.001000000000 0.611099504790 1.556539719993 0.800000000000 +chr1 19243000 19244000 Tfap2d 800.0 150000 0.001000000000 0.594707930687 1.448258695209 0.800000000000 +chr1 19244000 19245000 Tfap2d 800.0 151000 0.001250000000 0.394934687243 1.909974197425 1.000000000000 +chr1 19245000 19246000 Tfap2d 800.0 152000 0.001250000000 0.406285280003 1.850552777510 1.000000000000 +chr1 19246000 19247000 Tfap2d 800.0 153000 0.000750000000 0.596420485199 1.120289798118 0.600000000000 +chr1 19247000 19248000 Tfap2d 800.0 154000 0.000500000000 0.606160024614 0.760501141597 0.400000000000 +chr1 19248000 19249000 Tfap2d 800.0 155000 0.000500000000 0.609612095406 0.736945796329 0.400000000000 +chr1 19249000 19250000 Tfap2d 800.0 156000 0.000000000000 0.613314445827 0.000000000000 0.000000000000 +chr1 19250000 19251000 Tfap2d 800.0 157000 0.000250000000 0.602751520183 0.345538900195 0.200000000000 +chr1 19251000 19252000 Tfap2d 800.0 158000 0.000250000000 0.585293824856 0.333099500149 0.200000000000 +chr1 19252000 19253000 Tfap2d 800.0 159000 0.000250000000 0.573814787091 0.324026751047 0.200000000000 +chr1 19253000 19254000 Tfap2d 800.0 160000 0.000250000000 0.559100492248 0.319060823790 0.200000000000 +chr1 19254000 19255000 Tfap2d 800.0 161000 0.000250000000 0.533506885425 0.300631317590 0.200000000000 +chr1 19255000 19256000 Tfap2d 800.0 162000 0.000000000000 0.591476571829 0.000000000000 0.000000000000 +chr1 19256000 19257000 Tfap2d 800.0 163000 0.000000000000 0.593731273297 0.000000000000 0.000000000000 +chr1 19257000 19258000 Tfap2d 800.0 164000 0.000000000000 0.604924746422 0.000000000000 0.000000000000 +chr1 19258000 19259000 Tfap2d 800.0 165000 0.000250000000 0.620870359018 0.383755184381 0.200000000000 +chr1 19259000 19260000 Tfap2d 800.0 166000 0.000500000000 0.653063136379 0.832748750650 0.400000000000 +chr1 19260000 19261000 Tfap2d 800.0 167000 0.000750000000 0.616215444951 1.195333134476 0.600000000000 +chr1 19261000 19262000 Tfap2d 800.0 168000 0.000750000000 0.616137376589 1.161975000232 0.600000000000 +chr1 19262000 19263000 Tfap2d 800.0 169000 0.001000000000 0.600847921629 1.399577730324 0.800000000000 +chr1 19263000 19264000 Tfap2d 800.0 170000 0.000750000000 0.585658029501 1.015547256684 0.600000000000 +chr1 19264000 19265000 Tfap2d 800.0 171000 0.000750000000 0.601961893812 1.028084877240 0.600000000000 +chr1 19265000 19266000 Tfap2d 800.0 172000 0.000500000000 0.591031149544 0.643049227908 0.400000000000 +chr1 19266000 19267000 Tfap2d 800.0 173000 0.000750000000 0.574110012150 0.983561516064 0.600000000000 +chr1 19267000 19268000 Tfap2d 800.0 174000 0.000500000000 0.594064541193 0.693957291245 0.400000000000 +chr1 19268000 19269000 Tfap2d 800.0 175000 0.000750000000 0.586742846341 1.076830279776 0.600000000000 +chr1 19269000 19270000 Tfap2d 800.0 176000 0.000750000000 0.580281241496 1.063083510150 0.600000000000 +chr1 19270000 19271000 Tfap2d 800.0 177000 0.000750000000 0.600664600573 1.135566477299 0.600000000000 +chr1 19271000 19272000 Tfap2d 800.0 178000 0.000500000000 0.611923543314 0.785612028545 0.400000000000 +chr1 19272000 19273000 Tfap2d 800.0 179000 0.000500000000 0.616982108456 0.800719952292 0.400000000000 +chr1 19273000 19274000 Tfap2d 800.0 180000 0.000250000000 0.632990312064 0.422715101192 0.200000000000 +chr1 19274000 19275000 Tfap2d 800.0 181000 0.000000000000 0.637219432588 0.000000000000 0.000000000000 +chr1 19275000 19276000 Tfap2d 800.0 182000 0.000250000000 0.649572741436 0.447714381549 0.200000000000 +chr1 19276000 19277000 Tfap2d 800.0 183000 0.000250000000 0.640768493097 0.433723307028 0.200000000000 +chr1 19277000 19278000 Tfap2d 800.0 184000 0.000750000000 0.624583606023 1.218656708021 0.600000000000 +chr1 19278000 19279000 Tfap2d 800.0 185000 0.000750000000 0.617559413959 1.201079928437 0.600000000000 +chr1 19279000 19280000 Tfap2d 800.0 186000 0.000750000000 0.647906480781 1.328854387687 0.600000000000 +chr1 19280000 19281000 Tfap2d 800.0 187000 0.000500000000 0.651241359569 0.900268918608 0.400000000000 +chr1 19281000 19282000 Tfap2d 800.0 188000 0.000500000000 0.647869186187 0.890640373956 0.400000000000 +chr1 19282000 19283000 Tfap2d 800.0 189000 0.000000000000 0.671654971880 0.000000000000 0.000000000000 +chr1 19283000 19284000 Tfap2d 800.0 190000 0.000250000000 0.671941112135 0.486987573219 0.200000000000 +chr1 19284000 19285000 Tfap2d 800.0 191000 0.000250000000 0.658749839996 0.462638194377 0.200000000000 +chr1 19285000 19286000 Tfap2d 800.0 192000 0.000250000000 0.655383997647 0.457554258138 0.200000000000 +chr1 19286000 19287000 Tfap2d 800.0 193000 0.000500000000 0.676994533785 0.991367559904 0.400000000000 +chr1 19287000 19288000 Tfap2d 800.0 194000 0.000500000000 0.669325066593 0.962715318068 0.400000000000 +chr1 19288000 19289000 Tfap2d 800.0 195000 0.000250000000 0.685162890895 0.510888804001 0.200000000000 +chr1 19289000 19290000 Tfap2d 800.0 196000 0.000250000000 0.685254654751 0.510888804001 0.200000000000 +chr1 19290000 19291000 Tfap2d 800.0 197000 0.000250000000 0.664789163653 0.473152698875 0.200000000000 +chr1 19291000 19292000 Tfap2d 800.0 198000 0.000000000000 0.623323575813 0.000000000000 0.000000000000 +chr1 19292000 19293000 Tfap2d 800.0 199000 0.000000000000 0.643728679260 0.000000000000 0.000000000000 +chr1 19293000 19294000 Tfap2d 800.0 200000 0.000000000000 0.637624930855 0.000000000000 0.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 4287000 4288000 Sox17 978.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 4288000 4289000 Sox17 978.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 4289000 4290000 Sox17 978.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 4290000 4291000 Sox17 978.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 4291000 4292000 Sox17 978.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 4292000 4293000 Sox17 978.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 4293000 4294000 Sox17 978.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 4294000 4295000 Sox17 978.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 4295000 4296000 Sox17 978.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 4296000 4297000 Sox17 978.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 4297000 4298000 Sox17 978.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 4298000 4299000 Sox17 978.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 4299000 4300000 Sox17 978.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 4300000 4301000 Sox17 978.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 4301000 4302000 Sox17 978.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 4302000 4303000 Sox17 978.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 4303000 4304000 Sox17 978.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 4304000 4305000 Sox17 978.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 4305000 4306000 Sox17 978.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 4306000 4307000 Sox17 978.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 4307000 4308000 Sox17 978.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 4308000 4309000 Sox17 978.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 4309000 4310000 Sox17 978.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 4310000 4311000 Sox17 978.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 4311000 4312000 Sox17 978.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 4312000 4313000 Sox17 978.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 4313000 4314000 Sox17 978.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 4314000 4315000 Sox17 978.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 4315000 4316000 Sox17 978.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 4316000 4317000 Sox17 978.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 4317000 4318000 Sox17 978.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 4318000 4319000 Sox17 978.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 4319000 4320000 Sox17 978.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 4320000 4321000 Sox17 978.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 4321000 4322000 Sox17 978.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 4322000 4323000 Sox17 978.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 4323000 4324000 Sox17 978.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 4324000 4325000 Sox17 978.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 4325000 4326000 Sox17 978.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 4326000 4327000 Sox17 978.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 4327000 4328000 Sox17 978.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000 +chr1 4328000 4329000 Sox17 978.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000 +chr1 4329000 4330000 Sox17 978.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000 +chr1 4330000 4331000 Sox17 978.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000 +chr1 4331000 4332000 Sox17 978.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000 +chr1 4332000 4333000 Sox17 978.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 4333000 4334000 Sox17 978.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 4334000 4335000 Sox17 978.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 4335000 4336000 Sox17 978.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 4336000 4337000 Sox17 978.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 4337000 4338000 Sox17 978.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 4338000 4339000 Sox17 978.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 4339000 4340000 Sox17 978.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 4340000 4341000 Sox17 978.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000 +chr1 4341000 4342000 Sox17 978.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000 +chr1 4342000 4343000 Sox17 978.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000 +chr1 4343000 4344000 Sox17 978.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000 +chr1 4344000 4345000 Sox17 978.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000 +chr1 4345000 4346000 Sox17 978.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000 +chr1 4346000 4347000 Sox17 978.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000 +chr1 4347000 4348000 Sox17 978.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000 +chr1 4348000 4349000 Sox17 978.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000 +chr1 4349000 4350000 Sox17 978.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000 +chr1 4350000 4351000 Sox17 978.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000 +chr1 4351000 4352000 Sox17 978.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000 +chr1 4352000 4353000 Sox17 978.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000 +chr1 4353000 4354000 Sox17 978.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000 +chr1 4354000 4355000 Sox17 978.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000 +chr1 4355000 4356000 Sox17 978.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000 +chr1 4356000 4357000 Sox17 978.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000 +chr1 4357000 4358000 Sox17 978.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000 +chr1 4358000 4359000 Sox17 978.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000 +chr1 4359000 4360000 Sox17 978.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000 +chr1 4360000 4361000 Sox17 978.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000 +chr1 4361000 4362000 Sox17 978.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000 +chr1 4362000 4363000 Sox17 978.0 -125000 0.000000000000 0.789042220648 0.000000000000 0.000000000000 +chr1 4363000 4364000 Sox17 978.0 -124000 0.000000000000 0.798137256530 0.000000000000 0.000000000000 +chr1 4364000 4365000 Sox17 978.0 -123000 0.000000000000 0.785510253584 0.000000000000 0.000000000000 +chr1 4365000 4366000 Sox17 978.0 -122000 0.000000000000 0.799644194656 0.000000000000 0.000000000000 +chr1 4366000 4367000 Sox17 978.0 -121000 0.000000000000 0.790961581141 0.000000000000 0.000000000000 +chr1 4367000 4368000 Sox17 978.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000 +chr1 4368000 4369000 Sox17 978.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000 +chr1 4369000 4370000 Sox17 978.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000 +chr1 4370000 4371000 Sox17 978.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000 +chr1 4371000 4372000 Sox17 978.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000 +chr1 4372000 4373000 Sox17 978.0 -115000 0.000000000000 0.757379810911 0.000000000000 0.000000000000 +chr1 4373000 4374000 Sox17 978.0 -114000 0.000000000000 0.773895809279 0.000000000000 0.000000000000 +chr1 4374000 4375000 Sox17 978.0 -113000 0.000000000000 0.780251801078 0.000000000000 0.000000000000 +chr1 4375000 4376000 Sox17 978.0 -112000 0.000000000000 0.809192563048 0.000000000000 0.000000000000 +chr1 4376000 4377000 Sox17 978.0 -111000 0.000000000000 0.805959066383 0.000000000000 0.000000000000 +chr1 4377000 4378000 Sox17 978.0 -110000 0.000000000000 0.826154588365 0.000000000000 0.000000000000 +chr1 4378000 4379000 Sox17 978.0 -109000 0.000000000000 0.796608508060 0.000000000000 0.000000000000 +chr1 4379000 4380000 Sox17 978.0 -108000 0.000000000000 0.785369993572 0.000000000000 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.3 +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 14100000 14101000 Eya1 673.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 14101000 14102000 Eya1 673.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 14102000 14103000 Eya1 673.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 14103000 14104000 Eya1 673.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 14104000 14105000 Eya1 673.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 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1.204251218952 1.000000000000 +chr1 14398000 14399000 Eya1 673.0 98000 0.001783060921 0.545294386249 1.410776013193 1.200000000000 +chr1 14399000 14400000 Eya1 673.0 99000 0.002080237741 0.533937799572 1.767668754158 1.400000000000 +chr1 14400000 14401000 Eya1 673.0 100000 0.001485884101 0.514440152115 1.410106128595 1.000000000000 +chr1 14401000 14402000 Eya1 673.0 101000 0.000594353640 0.476647654186 0.603594208412 0.400000000000 +chr1 14402000 14403000 Eya1 673.0 102000 0.000594353640 0.458905220217 0.587474482247 0.400000000000 +chr1 14403000 14404000 Eya1 673.0 103000 0.000297176820 0.494251471435 0.324555574533 0.200000000000 +chr1 14404000 14405000 Eya1 673.0 104000 0.000000000000 0.496762683299 0.000000000000 0.000000000000 +chr1 14405000 14406000 Eya1 673.0 105000 0.000594353640 0.490944103656 0.592751199195 0.400000000000 +chr1 14406000 14407000 Eya1 673.0 106000 0.000594353640 0.505391527259 0.578885673960 0.400000000000 +chr1 14407000 14408000 Eya1 673.0 107000 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14418000 Eya1 673.0 117000 0.000891530461 0.523376482067 1.017014899996 0.600000000000 +chr1 14418000 14419000 Eya1 673.0 118000 0.000594353640 0.529451256365 0.687426738036 0.400000000000 +chr1 14419000 14420000 Eya1 673.0 119000 0.000594353640 0.533356831096 0.671114917005 0.400000000000 +chr1 14420000 14421000 Eya1 673.0 120000 0.000594353640 0.516584121708 0.662136790955 0.400000000000 +chr1 14421000 14422000 Eya1 673.0 121000 0.000297176820 0.535771528777 0.325623191563 0.200000000000 +chr1 14422000 14423000 Eya1 673.0 122000 0.000594353640 0.530490537983 0.668847636862 0.400000000000 +chr1 14423000 14424000 Eya1 673.0 123000 0.000594353640 0.530562527645 0.682685863943 0.400000000000 +chr1 14424000 14425000 Eya1 673.0 124000 0.000594353640 0.545553903451 0.725197437366 0.400000000000 +chr1 14425000 14426000 Eya1 673.0 125000 0.000594353640 0.564891705893 0.791915602137 0.400000000000 +chr1 14426000 14427000 Eya1 673.0 126000 0.001188707281 0.540351446443 1.477454480806 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14457000 Eya1 673.0 156000 0.000594353640 0.613314445827 0.876012833675 0.400000000000 +chr1 14457000 14458000 Eya1 673.0 157000 0.000594353640 0.602751520183 0.821489212945 0.400000000000 +chr1 14458000 14459000 Eya1 673.0 158000 0.001188707281 0.585293824856 1.583831204275 0.800000000000 +chr1 14459000 14460000 Eya1 673.0 159000 0.000594353640 0.573814787091 0.770345916308 0.400000000000 +chr1 14460000 14461000 Eya1 673.0 160000 0.001188707281 0.559100492248 1.517079697070 0.800000000000 +chr1 14461000 14462000 Eya1 673.0 161000 0.001188707281 0.533506885425 1.429450544260 0.800000000000 +chr1 14462000 14463000 Eya1 673.0 162000 0.001188707281 0.591476571829 1.616154290340 0.800000000000 +chr1 14463000 14464000 Eya1 673.0 163000 0.000594353640 0.593731273297 0.821489212945 0.400000000000 +chr1 14464000 14465000 Eya1 673.0 164000 0.000594353640 0.604924746422 0.857051516792 0.400000000000 +chr1 14465000 14466000 Eya1 673.0 165000 0.000000000000 0.620870359018 0.000000000000 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0.586742846341 0.000000000000 0.000000000000 +chr1 14476000 14477000 Eya1 673.0 176000 0.000297176820 0.580281241496 0.421231702882 0.200000000000 +chr1 14477000 14478000 Eya1 673.0 177000 0.000297176820 0.600664600573 0.449952046478 0.200000000000 +chr1 14478000 14479000 Eya1 673.0 178000 0.000594353640 0.611923543314 0.933862738240 0.400000000000 +chr1 14479000 14480000 Eya1 673.0 179000 0.000594353640 0.616982108456 0.951821637197 0.400000000000 +chr1 14480000 14481000 Eya1 673.0 180000 0.001485884101 0.367009687936 2.512422592521 1.000000000000 +chr1 14481000 14482000 Eya1 673.0 181000 0.001188707281 0.637219432588 2.020192860178 0.800000000000 +chr1 14482000 14483000 Eya1 673.0 182000 0.001188707281 0.649572741436 2.128805380321 0.800000000000 +chr1 14483000 14484000 Eya1 673.0 183000 0.001783060921 0.359231506903 3.093420317586 1.200000000000 +chr1 14484000 14485000 Eya1 673.0 184000 0.002080237741 0.375416393977 3.380127570538 1.400000000000 +chr1 14485000 14486000 Eya1 673.0 185000 0.001188707281 0.617559413959 1.903643274393 0.800000000000 +chr1 14486000 14487000 Eya1 673.0 186000 0.001188707281 0.647906480781 2.106158514412 0.800000000000 +chr1 14487000 14488000 Eya1 673.0 187000 0.001188707281 0.651241359569 2.140312436513 0.800000000000 +chr1 14488000 14489000 Eya1 673.0 188000 0.000594353640 0.647869186187 1.058710697124 0.400000000000 +chr1 14489000 14490000 Eya1 673.0 189000 0.000297176820 0.671654971880 0.575520059550 0.200000000000 +chr1 14490000 14491000 Eya1 673.0 190000 0.000297176820 0.671941112135 0.578885673960 0.200000000000 +chr1 14491000 14492000 Eya1 673.0 191000 0.002080237741 0.341250160004 3.849589730333 1.400000000000 +chr1 14492000 14493000 Eya1 673.0 192000 0.003268945022 0.068166431915 5.982878858272 2.200000000000 +chr1 14493000 14494000 Eya1 673.0 193000 0.002971768202 0.059322876246 5.892229182196 2.000000000000 +chr1 14494000 14495000 Eya1 673.0 194000 0.003268945022 0.062511655285 6.294126893758 2.200000000000 +chr1 14495000 14496000 Eya1 673.0 195000 0.003268945022 0.056441264815 6.680269651133 2.200000000000 +chr1 14496000 14497000 Eya1 673.0 196000 0.002971768202 0.056496760292 6.072972410121 2.000000000000 +chr1 14497000 14498000 Eya1 673.0 197000 0.002080237741 0.335210836347 3.937080406684 1.400000000000 +chr1 14498000 14499000 Eya1 673.0 198000 0.002971768202 0.083110512066 4.852424033528 2.000000000000 +chr1 14499000 14500000 Eya1 673.0 199000 0.003343239227 0.073447408129 5.830530441735 2.250000000000 +chr1 14500000 14501000 Eya1 673.0 200000 0.004457652303 1.000000000000 7.575723225668 3.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.3 +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 18893000 18894000 Tfap2d 472.0 -200000 0.001412429379 0.880044890460 8.554173074049 0.666666666667 +chr1 18894000 18895000 Tfap2d 472.0 -199000 0.001059322034 0.852151439574 5.040852007510 0.500000000000 +chr1 18895000 18896000 Tfap2d 472.0 -198000 0.000847457627 0.820756603944 3.282415254892 0.400000000000 +chr1 18896000 18897000 Tfap2d 472.0 -197000 0.000847457627 0.814190727178 3.136530131373 0.400000000000 +chr1 18897000 18898000 Tfap2d 472.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 18898000 18899000 Tfap2d 472.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 18899000 18900000 Tfap2d 472.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 18900000 18901000 Tfap2d 472.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 18901000 18902000 Tfap2d 472.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 18902000 18903000 Tfap2d 472.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 18903000 18904000 Tfap2d 472.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 18904000 18905000 Tfap2d 472.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 18905000 18906000 Tfap2d 472.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 18906000 18907000 Tfap2d 472.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 18907000 18908000 Tfap2d 472.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 18908000 18909000 Tfap2d 472.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 18909000 18910000 Tfap2d 472.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 18910000 18911000 Tfap2d 472.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 18911000 18912000 Tfap2d 472.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 18912000 18913000 Tfap2d 472.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 18913000 18914000 Tfap2d 472.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 18914000 18915000 Tfap2d 472.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 18915000 18916000 Tfap2d 472.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 18916000 18917000 Tfap2d 472.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 18917000 18918000 Tfap2d 472.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 18918000 18919000 Tfap2d 472.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 18919000 18920000 Tfap2d 472.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 18920000 18921000 Tfap2d 472.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 18921000 18922000 Tfap2d 472.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 18922000 18923000 Tfap2d 472.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 18923000 18924000 Tfap2d 472.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 18924000 18925000 Tfap2d 472.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 18925000 18926000 Tfap2d 472.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 18926000 18927000 Tfap2d 472.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 18927000 18928000 Tfap2d 472.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 18928000 18929000 Tfap2d 472.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 18929000 18930000 Tfap2d 472.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 18930000 18931000 Tfap2d 472.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 18931000 18932000 Tfap2d 472.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 18932000 18933000 Tfap2d 472.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 18933000 18934000 Tfap2d 472.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000 +chr1 18934000 18935000 Tfap2d 472.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000 +chr1 18935000 18936000 Tfap2d 472.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000 +chr1 18936000 18937000 Tfap2d 472.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000 +chr1 18937000 18938000 Tfap2d 472.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000 +chr1 18938000 18939000 Tfap2d 472.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 18939000 18940000 Tfap2d 472.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 18940000 18941000 Tfap2d 472.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 18941000 18942000 Tfap2d 472.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 18942000 18943000 Tfap2d 472.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 18943000 18944000 Tfap2d 472.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 18944000 18945000 Tfap2d 472.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 18945000 18946000 Tfap2d 472.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 18946000 18947000 Tfap2d 472.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000 +chr1 18947000 18948000 Tfap2d 472.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000 +chr1 18948000 18949000 Tfap2d 472.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000 +chr1 18949000 18950000 Tfap2d 472.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000 +chr1 18950000 18951000 Tfap2d 472.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000 +chr1 18951000 18952000 Tfap2d 472.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000 +chr1 18952000 18953000 Tfap2d 472.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000 +chr1 18953000 18954000 Tfap2d 472.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000 +chr1 18954000 18955000 Tfap2d 472.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000 +chr1 18955000 18956000 Tfap2d 472.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000 +chr1 18956000 18957000 Tfap2d 472.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000 +chr1 18957000 18958000 Tfap2d 472.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000 +chr1 18958000 18959000 Tfap2d 472.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000 +chr1 18959000 18960000 Tfap2d 472.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000 +chr1 18960000 18961000 Tfap2d 472.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000 +chr1 18961000 18962000 Tfap2d 472.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000 +chr1 18962000 18963000 Tfap2d 472.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000 +chr1 18963000 18964000 Tfap2d 472.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000 +chr1 18964000 18965000 Tfap2d 472.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000 +chr1 18965000 18966000 Tfap2d 472.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000 +chr1 18966000 18967000 Tfap2d 472.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000 +chr1 18967000 18968000 Tfap2d 472.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000 +chr1 18968000 18969000 Tfap2d 472.0 -125000 0.000000000000 0.789042220648 0.000000000000 0.000000000000 +chr1 18969000 18970000 Tfap2d 472.0 -124000 0.000000000000 0.798137256530 0.000000000000 0.000000000000 +chr1 18970000 18971000 Tfap2d 472.0 -123000 0.000000000000 0.785510253584 0.000000000000 0.000000000000 +chr1 18971000 18972000 Tfap2d 472.0 -122000 0.000000000000 0.799644194656 0.000000000000 0.000000000000 +chr1 18972000 18973000 Tfap2d 472.0 -121000 0.000000000000 0.790961581141 0.000000000000 0.000000000000 +chr1 18973000 18974000 Tfap2d 472.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000 +chr1 18974000 18975000 Tfap2d 472.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000 +chr1 18975000 18976000 Tfap2d 472.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000 +chr1 18976000 18977000 Tfap2d 472.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000 +chr1 18977000 18978000 Tfap2d 472.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000 +chr1 18978000 18979000 Tfap2d 472.0 -115000 0.001271186441 0.757379810911 3.257165906583 0.600000000000 +chr1 18979000 18980000 Tfap2d 472.0 -114000 0.001271186441 0.773895809279 3.470750557945 0.600000000000 +chr1 18980000 18981000 Tfap2d 472.0 -113000 0.001271186441 0.780251801078 3.814698814531 0.600000000000 +chr1 18981000 18982000 Tfap2d 472.0 -112000 0.001271186441 0.809192563048 4.602517039860 0.600000000000 +chr1 18982000 18983000 Tfap2d 472.0 -111000 0.001271186441 0.805959066383 4.553027608970 0.600000000000 +chr1 18983000 18984000 Tfap2d 472.0 -110000 0.000000000000 0.826154588365 0.000000000000 0.000000000000 +chr1 18984000 18985000 Tfap2d 472.0 -109000 0.000000000000 0.796608508060 0.000000000000 0.000000000000 +chr1 18985000 18986000 Tfap2d 472.0 -108000 0.000000000000 0.785369993572 0.000000000000 0.000000000000 +chr1 18986000 18987000 Tfap2d 472.0 -107000 0.000000000000 0.763585636187 0.000000000000 0.000000000000 +chr1 18987000 18988000 Tfap2d 472.0 -106000 0.000000000000 0.796206503792 0.000000000000 0.000000000000 +chr1 18988000 18989000 Tfap2d 472.0 -105000 0.000000000000 0.801881199084 0.000000000000 0.000000000000 +chr1 18989000 18990000 Tfap2d 472.0 -104000 0.000000000000 0.830453698245 0.000000000000 0.000000000000 +chr1 18990000 18991000 Tfap2d 472.0 -103000 0.000000000000 0.843960603767 0.000000000000 0.000000000000 +chr1 18991000 18992000 Tfap2d 472.0 -102000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 18992000 18993000 Tfap2d 472.0 -101000 0.000000000000 0.853858772997 0.000000000000 0.000000000000 +chr1 18993000 18994000 Tfap2d 472.0 -100000 0.000000000000 0.828442819541 0.000000000000 0.000000000000 +chr1 18994000 18995000 Tfap2d 472.0 -99000 0.000000000000 0.815159530773 0.000000000000 0.000000000000 +chr1 18995000 18996000 Tfap2d 472.0 -98000 0.000000000000 0.803890742201 0.000000000000 0.000000000000 +chr1 18996000 18997000 Tfap2d 472.0 -97000 0.000000000000 0.793812954579 0.000000000000 0.000000000000 +chr1 18997000 18998000 Tfap2d 472.0 -96000 0.000000000000 0.776513211062 0.000000000000 0.000000000000 +chr1 18998000 18999000 Tfap2d 472.0 -95000 0.000000000000 0.769795672212 0.000000000000 0.000000000000 +chr1 18999000 19000000 Tfap2d 472.0 -94000 0.000423728814 0.745179566394 1.102686374757 0.200000000000 +chr1 19000000 19001000 Tfap2d 472.0 -93000 0.000423728814 0.740519396446 1.061231999455 0.200000000000 +chr1 19001000 19002000 Tfap2d 472.0 -92000 0.000423728814 0.723302632894 0.779800308873 0.200000000000 +chr1 19002000 19003000 Tfap2d 472.0 -91000 0.000423728814 0.723801019412 0.735124249200 0.200000000000 +chr1 19003000 19004000 Tfap2d 472.0 -90000 0.000423728814 0.727642253997 0.727545648641 0.200000000000 +chr1 19004000 19005000 Tfap2d 472.0 -89000 0.000000000000 0.754315244689 0.000000000000 0.000000000000 +chr1 19005000 19006000 Tfap2d 472.0 -88000 0.000000000000 0.748521601906 0.000000000000 0.000000000000 +chr1 19006000 19007000 Tfap2d 472.0 -87000 0.000000000000 0.773106724449 0.000000000000 0.000000000000 +chr1 19007000 19008000 Tfap2d 472.0 -86000 0.000000000000 0.763860606499 0.000000000000 0.000000000000 +chr1 19008000 19009000 Tfap2d 472.0 -85000 0.000000000000 0.758432715512 0.000000000000 0.000000000000 +chr1 19009000 19010000 Tfap2d 472.0 -84000 0.000000000000 0.763116447672 0.000000000000 0.000000000000 +chr1 19010000 19011000 Tfap2d 472.0 -83000 0.000000000000 0.774521391995 0.000000000000 0.000000000000 +chr1 19011000 19012000 Tfap2d 472.0 -82000 0.000000000000 0.783854637009 0.000000000000 0.000000000000 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19032000 Tfap2d 472.0 -62000 0.000000000000 0.714104264339 0.000000000000 0.000000000000 +chr1 19032000 19033000 Tfap2d 472.0 -61000 0.000000000000 0.719520193233 0.000000000000 0.000000000000 +chr1 19033000 19034000 Tfap2d 472.0 -60000 0.000000000000 0.706118755048 0.000000000000 0.000000000000 +chr1 19034000 19035000 Tfap2d 472.0 -59000 0.000000000000 0.694795175639 0.000000000000 0.000000000000 +chr1 19035000 19036000 Tfap2d 472.0 -58000 0.000000000000 0.677279626754 0.000000000000 0.000000000000 +chr1 19036000 19037000 Tfap2d 472.0 -57000 0.000000000000 0.660669632705 0.000000000000 0.000000000000 +chr1 19037000 19038000 Tfap2d 472.0 -56000 0.000000000000 0.654051782916 0.000000000000 0.000000000000 +chr1 19038000 19039000 Tfap2d 472.0 -55000 0.000000000000 0.645975994037 0.000000000000 0.000000000000 +chr1 19039000 19040000 Tfap2d 472.0 -54000 0.000000000000 0.633180473855 0.000000000000 0.000000000000 +chr1 19040000 19041000 Tfap2d 472.0 -53000 0.000000000000 0.617831075012 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Tfap2d 472.0 5000 0.017796610169 0.464125883935 1.469519570887 8.400000000000 +chr1 19099000 19100000 Tfap2d 472.0 6000 0.012288135593 0.599920722050 1.174511283228 5.800000000000 +chr1 19100000 19101000 Tfap2d 472.0 7000 0.009745762712 0.648644847125 1.020530866525 4.600000000000 +chr1 19101000 19102000 Tfap2d 472.0 8000 0.010169491525 0.617313437581 1.167282061499 4.800000000000 +chr1 19102000 19103000 Tfap2d 472.0 9000 0.011440677966 0.505323631373 1.429438900967 5.400000000000 +chr1 19103000 19104000 Tfap2d 472.0 10000 0.010593220339 0.471943885135 1.461721788921 5.000000000000 +chr1 19104000 19105000 Tfap2d 472.0 11000 0.012288135593 0.426093076221 1.918974131188 5.800000000000 +chr1 19105000 19106000 Tfap2d 472.0 12000 0.010169491525 0.493994843515 1.708246365312 4.800000000000 +chr1 19106000 19107000 Tfap2d 472.0 13000 0.007203389831 0.575676120188 1.341221660736 3.400000000000 +chr1 19107000 19108000 Tfap2d 472.0 14000 0.007203389831 0.549873642111 1.483887168230 3.400000000000 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0.137835796800 0.200000000000 +chr1 19118000 19119000 Tfap2d 472.0 25000 0.000000000000 0.221629958422 0.000000000000 0.000000000000 +chr1 19119000 19120000 Tfap2d 472.0 26000 0.000000000000 0.253083049210 0.000000000000 0.000000000000 +chr1 19120000 19121000 Tfap2d 472.0 27000 0.000000000000 0.245782528167 0.000000000000 0.000000000000 +chr1 19121000 19122000 Tfap2d 472.0 28000 0.000000000000 0.257054437971 0.000000000000 0.000000000000 +chr1 19122000 19123000 Tfap2d 472.0 29000 0.000000000000 0.269849417041 0.000000000000 0.000000000000 +chr1 19123000 19124000 Tfap2d 472.0 30000 0.000000000000 0.267357188523 0.000000000000 0.000000000000 +chr1 19124000 19125000 Tfap2d 472.0 31000 0.002118644068 0.758317068786 0.852317970687 1.000000000000 +chr1 19125000 19126000 Tfap2d 472.0 32000 0.003813559322 0.746203194231 1.599867384629 1.800000000000 +chr1 19126000 19127000 Tfap2d 472.0 33000 0.004237288136 0.484322511884 1.807219666460 2.000000000000 +chr1 19127000 19128000 Tfap2d 472.0 34000 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19137000 19138000 Tfap2d 472.0 44000 0.003389830508 0.727364443818 1.839007894971 1.600000000000 +chr1 19138000 19139000 Tfap2d 472.0 45000 0.001694915254 0.330403958794 1.020932050432 0.800000000000 +chr1 19139000 19140000 Tfap2d 472.0 46000 0.000847457627 0.354229170518 0.511390782515 0.400000000000 +chr1 19140000 19141000 Tfap2d 472.0 47000 0.000423728814 0.385407333559 0.267825153582 0.200000000000 +chr1 19141000 19142000 Tfap2d 472.0 48000 0.000000000000 0.404372467862 0.000000000000 0.000000000000 +chr1 19142000 19143000 Tfap2d 472.0 49000 0.000000000000 0.413849789054 0.000000000000 0.000000000000 +chr1 19143000 19144000 Tfap2d 472.0 50000 0.000423728814 0.397832458678 0.262349174564 0.200000000000 +chr1 19144000 19145000 Tfap2d 472.0 51000 0.001271186441 0.392072772958 0.797422914856 0.600000000000 +chr1 19145000 19146000 Tfap2d 472.0 52000 0.002118644068 0.612204475076 1.299667181455 1.000000000000 +chr1 19146000 19147000 Tfap2d 472.0 53000 0.002118644068 0.618352766870 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0.001694915254 0.408005877354 1.246303363398 0.800000000000 +chr1 19157000 19158000 Tfap2d 472.0 64000 0.002118644068 0.602962162524 1.564787759528 1.000000000000 +chr1 19158000 19159000 Tfap2d 472.0 65000 0.002966101695 0.602317369319 2.313833704394 1.400000000000 +chr1 19159000 19160000 Tfap2d 472.0 66000 0.001694915254 0.438277764764 1.447629291815 0.800000000000 +chr1 19160000 19161000 Tfap2d 472.0 67000 0.002118644068 0.567560882986 1.729704116472 1.000000000000 +chr1 19161000 19162000 Tfap2d 472.0 68000 0.002118644068 0.547265021096 1.759898452895 1.000000000000 +chr1 19162000 19163000 Tfap2d 472.0 69000 0.001694915254 0.465980642540 1.394013391721 0.800000000000 +chr1 19163000 19164000 Tfap2d 472.0 70000 0.000423728814 0.444796187147 0.341752677703 0.200000000000 +chr1 19164000 19165000 Tfap2d 472.0 71000 0.000847457627 0.428059180779 0.661095344113 0.400000000000 +chr1 19165000 19166000 Tfap2d 472.0 72000 0.000423728814 0.412214629831 0.337664726984 0.200000000000 +chr1 19166000 19167000 Tfap2d 472.0 73000 0.000423728814 0.409759647919 0.349365979986 0.200000000000 +chr1 19167000 19168000 Tfap2d 472.0 74000 0.000423728814 0.393442654531 0.336056799968 0.200000000000 +chr1 19168000 19169000 Tfap2d 472.0 75000 0.000423728814 0.408748776277 0.327479944218 0.200000000000 +chr1 19169000 19170000 Tfap2d 472.0 76000 0.000423728814 0.414669054354 0.325216257950 0.200000000000 +chr1 19170000 19171000 Tfap2d 472.0 77000 0.000847457627 0.420440038855 0.630106499627 0.400000000000 +chr1 19171000 19172000 Tfap2d 472.0 78000 0.000847457627 0.423235388129 0.693581601507 0.400000000000 +chr1 19172000 19173000 Tfap2d 472.0 79000 0.000847457627 0.424768297386 0.703959381158 0.400000000000 +chr1 19173000 19174000 Tfap2d 472.0 80000 0.000847457627 0.458578421689 0.740912629804 0.400000000000 +chr1 19174000 19175000 Tfap2d 472.0 81000 0.000847457627 0.452159184220 0.721963457541 0.400000000000 +chr1 19175000 19176000 Tfap2d 472.0 82000 0.000423728814 0.468337454947 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19195000 19196000 Tfap2d 472.0 102000 0.000847457627 0.458905220217 0.837648996932 0.400000000000 +chr1 19196000 19197000 Tfap2d 472.0 103000 0.000847457627 0.494251471435 0.925533481613 0.400000000000 +chr1 19197000 19198000 Tfap2d 472.0 104000 0.001694915254 0.496762683299 1.764298198693 0.800000000000 +chr1 19198000 19199000 Tfap2d 472.0 105000 0.002118644068 0.509055896344 2.112931975945 1.000000000000 +chr1 19199000 19200000 Tfap2d 472.0 106000 0.002118644068 0.494608472741 2.063506666181 1.000000000000 +chr1 19200000 19201000 Tfap2d 472.0 107000 0.002118644068 0.499149741114 1.982357527016 1.000000000000 +chr1 19201000 19202000 Tfap2d 472.0 108000 0.002542372881 0.503477555567 2.320172973657 1.200000000000 +chr1 19202000 19203000 Tfap2d 472.0 109000 0.001271186441 0.499669178563 1.202930590359 0.600000000000 +chr1 19203000 19204000 Tfap2d 472.0 110000 0.000847457627 0.503445250814 0.830257976313 0.400000000000 +chr1 19204000 19205000 Tfap2d 472.0 111000 0.001271186441 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472.0 140000 0.001271186441 0.584686184662 1.339973315587 0.600000000000 +chr1 19234000 19235000 Tfap2d 472.0 141000 0.000847457627 0.604143773708 0.963439290036 0.400000000000 +chr1 19235000 19236000 Tfap2d 472.0 142000 0.000423728814 0.632888736121 0.538717007419 0.200000000000 +chr1 19236000 19237000 Tfap2d 472.0 143000 0.001271186441 0.631972051038 1.539751155194 0.600000000000 +chr1 19237000 19238000 Tfap2d 472.0 144000 0.001271186441 0.630242651353 1.749717221137 0.600000000000 +chr1 19238000 19239000 Tfap2d 472.0 145000 0.001271186441 0.654163481416 2.117157840635 0.600000000000 +chr1 19239000 19240000 Tfap2d 472.0 146000 0.001694915254 0.637809455886 2.601730063600 0.800000000000 +chr1 19240000 19241000 Tfap2d 472.0 147000 0.001271186441 0.621469775934 1.857155998658 0.600000000000 +chr1 19241000 19242000 Tfap2d 472.0 148000 0.000423728814 0.608829914540 0.641562981525 0.200000000000 +chr1 19242000 19243000 Tfap2d 472.0 149000 0.000423728814 0.611099504790 0.659550728811 0.200000000000 +chr1 19243000 19244000 Tfap2d 472.0 150000 0.000847457627 0.594707930687 1.227337877296 0.400000000000 +chr1 19244000 19245000 Tfap2d 472.0 151000 0.001271186441 0.605065312757 1.942346641449 0.600000000000 +chr1 19245000 19246000 Tfap2d 472.0 152000 0.001271186441 0.593714719997 1.881918078824 0.600000000000 +chr1 19246000 19247000 Tfap2d 472.0 153000 0.002118644068 0.403579514801 3.164660446662 1.000000000000 +chr1 19247000 19248000 Tfap2d 472.0 154000 0.002118644068 0.393839975386 3.222462464392 1.000000000000 +chr1 19248000 19249000 Tfap2d 472.0 155000 0.001694915254 0.609612095406 2.498121343489 0.800000000000 +chr1 19249000 19250000 Tfap2d 472.0 156000 0.000847457627 0.613314445827 1.249060671745 0.400000000000 +chr1 19250000 19251000 Tfap2d 472.0 157000 0.000847457627 0.602751520183 1.171318305746 0.400000000000 +chr1 19251000 19252000 Tfap2d 472.0 158000 0.000000000000 0.585293824856 0.000000000000 0.000000000000 +chr1 19252000 19253000 Tfap2d 472.0 159000 0.000847457627 0.573814787091 1.098395766262 0.400000000000 +chr1 19253000 19254000 Tfap2d 472.0 160000 0.000847457627 0.559100492248 1.081562114542 0.400000000000 +chr1 19254000 19255000 Tfap2d 472.0 161000 0.001694915254 0.533506885425 2.038178424337 0.800000000000 +chr1 19255000 19256000 Tfap2d 472.0 162000 0.001694915254 0.591476571829 2.304389486014 0.800000000000 +chr1 19256000 19257000 Tfap2d 472.0 163000 0.002542372881 0.406268726703 3.513954917238 1.200000000000 +chr1 19257000 19258000 Tfap2d 472.0 164000 0.002118644068 0.395075253578 3.055061815685 1.000000000000 +chr1 19258000 19259000 Tfap2d 472.0 165000 0.002118644068 0.379129640982 3.252162579500 1.000000000000 +chr1 19259000 19260000 Tfap2d 472.0 166000 0.001694915254 0.653063136379 2.822877120847 0.800000000000 +chr1 19260000 19261000 Tfap2d 472.0 167000 0.001694915254 0.616215444951 2.701317818024 0.800000000000 +chr1 19261000 19262000 Tfap2d 472.0 168000 0.000847457627 0.616137376589 1.312966101957 0.400000000000 +chr1 19262000 19263000 Tfap2d 472.0 169000 0.000423728814 0.600847921629 0.593041411154 0.200000000000 +chr1 19263000 19264000 Tfap2d 472.0 170000 0.000423728814 0.585658029501 0.573755512251 0.200000000000 +chr1 19264000 19265000 Tfap2d 472.0 171000 0.000000000000 0.601961893812 0.000000000000 0.000000000000 +chr1 19265000 19266000 Tfap2d 472.0 172000 0.000000000000 0.591031149544 0.000000000000 0.000000000000 +chr1 19266000 19267000 Tfap2d 472.0 173000 0.000000000000 0.574110012150 0.000000000000 0.000000000000 +chr1 19267000 19268000 Tfap2d 472.0 174000 0.000000000000 0.594064541193 0.000000000000 0.000000000000 +chr1 19268000 19269000 Tfap2d 472.0 175000 0.000423728814 0.586742846341 0.608378689139 0.200000000000 +chr1 19269000 19270000 Tfap2d 472.0 176000 0.000423728814 0.580281241496 0.600612152627 0.200000000000 +chr1 19270000 19271000 Tfap2d 472.0 177000 0.000423728814 0.600664600573 0.641562981525 0.200000000000 +chr1 19271000 19272000 Tfap2d 472.0 178000 0.000423728814 0.611923543314 0.665772905546 0.200000000000 +chr1 19272000 19273000 Tfap2d 472.0 179000 0.000423728814 0.616982108456 0.678576230756 0.200000000000 +chr1 19273000 19274000 Tfap2d 472.0 180000 0.000000000000 0.632990312064 0.000000000000 0.000000000000 +chr1 19274000 19275000 Tfap2d 472.0 181000 0.000000000000 0.637219432588 0.000000000000 0.000000000000 +chr1 19275000 19276000 Tfap2d 472.0 182000 0.000423728814 0.649572741436 0.758837934828 0.200000000000 +chr1 19276000 19277000 Tfap2d 472.0 183000 0.000423728814 0.640768493097 0.735124249200 0.200000000000 +chr1 19277000 19278000 Tfap2d 472.0 184000 0.000423728814 0.624583606023 0.688506614701 0.200000000000 +chr1 19278000 19279000 Tfap2d 472.0 185000 0.000423728814 0.617559413959 0.678576230756 0.200000000000 +chr1 19279000 19280000 Tfap2d 472.0 186000 0.000423728814 0.647906480781 0.750765190784 0.200000000000 +chr1 19280000 19281000 Tfap2d 472.0 187000 0.000000000000 0.651241359569 0.000000000000 0.000000000000 +chr1 19281000 19282000 Tfap2d 472.0 188000 0.000000000000 0.647869186187 0.000000000000 0.000000000000 +chr1 19282000 19283000 Tfap2d 472.0 189000 0.000000000000 0.671654971880 0.000000000000 0.000000000000 +chr1 19283000 19284000 Tfap2d 472.0 190000 0.000000000000 0.671941112135 0.000000000000 0.000000000000 +chr1 19284000 19285000 Tfap2d 472.0 191000 0.000000000000 0.658749839996 0.000000000000 0.000000000000 +chr1 19285000 19286000 Tfap2d 472.0 192000 0.000000000000 0.655383997647 0.000000000000 0.000000000000 +chr1 19286000 19287000 Tfap2d 472.0 193000 0.000000000000 0.676994533785 0.000000000000 0.000000000000 +chr1 19287000 19288000 Tfap2d 472.0 194000 0.000000000000 0.669325066593 0.000000000000 0.000000000000 +chr1 19288000 19289000 Tfap2d 472.0 195000 0.000000000000 0.685162890895 0.000000000000 0.000000000000 +chr1 19289000 19290000 Tfap2d 472.0 196000 0.000000000000 0.685254654751 0.000000000000 0.000000000000 +chr1 19290000 19291000 Tfap2d 472.0 197000 0.000000000000 0.664789163653 0.000000000000 0.000000000000 +chr1 19291000 19292000 Tfap2d 472.0 198000 0.000000000000 0.623323575813 0.000000000000 0.000000000000 +chr1 19292000 19293000 Tfap2d 472.0 199000 0.000000000000 0.643728679260 0.000000000000 0.000000000000 +chr1 19293000 19294000 Tfap2d 472.0 200000 0.000000000000 0.637624930855 0.000000000000 0.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.3 +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 4287000 4288000 Sox17 810.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 4288000 4289000 Sox17 810.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 4289000 4290000 Sox17 810.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 4290000 4291000 Sox17 810.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 4291000 4292000 Sox17 810.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 4292000 4293000 Sox17 810.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 4293000 4294000 Sox17 810.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 4294000 4295000 Sox17 810.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 4295000 4296000 Sox17 810.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 4296000 4297000 Sox17 810.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 4297000 4298000 Sox17 810.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 4298000 4299000 Sox17 810.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 4299000 4300000 Sox17 810.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 4300000 4301000 Sox17 810.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 4301000 4302000 Sox17 810.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 4302000 4303000 Sox17 810.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 4303000 4304000 Sox17 810.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 4304000 4305000 Sox17 810.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 4305000 4306000 Sox17 810.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 4306000 4307000 Sox17 810.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 4307000 4308000 Sox17 810.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 4308000 4309000 Sox17 810.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 4309000 4310000 Sox17 810.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 4310000 4311000 Sox17 810.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 4311000 4312000 Sox17 810.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 4312000 4313000 Sox17 810.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 4313000 4314000 Sox17 810.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 4314000 4315000 Sox17 810.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 4315000 4316000 Sox17 810.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 4316000 4317000 Sox17 810.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 4317000 4318000 Sox17 810.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 4318000 4319000 Sox17 810.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 4319000 4320000 Sox17 810.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 4320000 4321000 Sox17 810.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 4321000 4322000 Sox17 810.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 4322000 4323000 Sox17 810.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 4323000 4324000 Sox17 810.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 4324000 4325000 Sox17 810.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 4325000 4326000 Sox17 810.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 4326000 4327000 Sox17 810.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 4327000 4328000 Sox17 810.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000 +chr1 4328000 4329000 Sox17 810.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000 +chr1 4329000 4330000 Sox17 810.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000 +chr1 4330000 4331000 Sox17 810.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000 +chr1 4331000 4332000 Sox17 810.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000 +chr1 4332000 4333000 Sox17 810.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 4333000 4334000 Sox17 810.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 4334000 4335000 Sox17 810.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 4335000 4336000 Sox17 810.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 4336000 4337000 Sox17 810.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 4337000 4338000 Sox17 810.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 4338000 4339000 Sox17 810.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 4339000 4340000 Sox17 810.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 4340000 4341000 Sox17 810.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000 +chr1 4341000 4342000 Sox17 810.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000 +chr1 4342000 4343000 Sox17 810.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000 +chr1 4343000 4344000 Sox17 810.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000 +chr1 4344000 4345000 Sox17 810.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000 +chr1 4345000 4346000 Sox17 810.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000 +chr1 4346000 4347000 Sox17 810.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000 +chr1 4347000 4348000 Sox17 810.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000 +chr1 4348000 4349000 Sox17 810.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000 +chr1 4349000 4350000 Sox17 810.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000 +chr1 4350000 4351000 Sox17 810.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000 +chr1 4351000 4352000 Sox17 810.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000 +chr1 4352000 4353000 Sox17 810.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000 +chr1 4353000 4354000 Sox17 810.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000 +chr1 4354000 4355000 Sox17 810.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000 +chr1 4355000 4356000 Sox17 810.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000 +chr1 4356000 4357000 Sox17 810.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000 +chr1 4357000 4358000 Sox17 810.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000 +chr1 4358000 4359000 Sox17 810.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000 +chr1 4359000 4360000 Sox17 810.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000 +chr1 4360000 4361000 Sox17 810.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000 +chr1 4361000 4362000 Sox17 810.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000 +chr1 4362000 4363000 Sox17 810.0 -125000 0.000000000000 0.789042220648 0.000000000000 0.000000000000 +chr1 4363000 4364000 Sox17 810.0 -124000 0.000000000000 0.798137256530 0.000000000000 0.000000000000 +chr1 4364000 4365000 Sox17 810.0 -123000 0.000000000000 0.785510253584 0.000000000000 0.000000000000 +chr1 4365000 4366000 Sox17 810.0 -122000 0.000000000000 0.799644194656 0.000000000000 0.000000000000 +chr1 4366000 4367000 Sox17 810.0 -121000 0.000000000000 0.790961581141 0.000000000000 0.000000000000 +chr1 4367000 4368000 Sox17 810.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000 +chr1 4368000 4369000 Sox17 810.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000 +chr1 4369000 4370000 Sox17 810.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000 +chr1 4370000 4371000 Sox17 810.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000 +chr1 4371000 4372000 Sox17 810.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000 +chr1 4372000 4373000 Sox17 810.0 -115000 0.000000000000 0.757379810911 0.000000000000 0.000000000000 +chr1 4373000 4374000 Sox17 810.0 -114000 0.000000000000 0.773895809279 0.000000000000 0.000000000000 +chr1 4374000 4375000 Sox17 810.0 -113000 0.000000000000 0.780251801078 0.000000000000 0.000000000000 +chr1 4375000 4376000 Sox17 810.0 -112000 0.000000000000 0.809192563048 0.000000000000 0.000000000000 +chr1 4376000 4377000 Sox17 810.0 -111000 0.000000000000 0.805959066383 0.000000000000 0.000000000000 +chr1 4377000 4378000 Sox17 810.0 -110000 0.000000000000 0.826154588365 0.000000000000 0.000000000000 +chr1 4378000 4379000 Sox17 810.0 -109000 0.000000000000 0.796608508060 0.000000000000 0.000000000000 +chr1 4379000 4380000 Sox17 810.0 -108000 0.000000000000 0.785369993572 0.000000000000 0.000000000000 +chr1 4380000 4381000 Sox17 810.0 -107000 0.000000000000 0.763585636187 0.000000000000 0.000000000000 +chr1 4381000 4382000 Sox17 810.0 -106000 0.000000000000 0.796206503792 0.000000000000 0.000000000000 +chr1 4382000 4383000 Sox17 810.0 -105000 0.000000000000 0.801881199084 0.000000000000 0.000000000000 +chr1 4383000 4384000 Sox17 810.0 -104000 0.000000000000 0.830453698245 0.000000000000 0.000000000000 +chr1 4384000 4385000 Sox17 810.0 -103000 0.000000000000 0.843960603767 0.000000000000 0.000000000000 +chr1 4385000 4386000 Sox17 810.0 -102000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 4386000 4387000 Sox17 810.0 -101000 0.000000000000 0.853858772997 0.000000000000 0.000000000000 +chr1 4387000 4388000 Sox17 810.0 -100000 0.000000000000 0.828442819541 0.000000000000 0.000000000000 +chr1 4388000 4389000 Sox17 810.0 -99000 0.000000000000 0.815159530773 0.000000000000 0.000000000000 +chr1 4389000 4390000 Sox17 810.0 -98000 0.000000000000 0.803890742201 0.000000000000 0.000000000000 +chr1 4390000 4391000 Sox17 810.0 -97000 0.000000000000 0.793812954579 0.000000000000 0.000000000000 +chr1 4391000 4392000 Sox17 810.0 -96000 0.000000000000 0.776513211062 0.000000000000 0.000000000000 +chr1 4392000 4393000 Sox17 810.0 -95000 0.000000000000 0.769795672212 0.000000000000 0.000000000000 +chr1 4393000 4394000 Sox17 810.0 -94000 0.000000000000 0.745179566394 0.000000000000 0.000000000000 +chr1 4394000 4395000 Sox17 810.0 -93000 0.000000000000 0.740519396446 0.000000000000 0.000000000000 +chr1 4395000 4396000 Sox17 810.0 -92000 0.000000000000 0.723302632894 0.000000000000 0.000000000000 +chr1 4396000 4397000 Sox17 810.0 -91000 0.000000000000 0.723801019412 0.000000000000 0.000000000000 +chr1 4397000 4398000 Sox17 810.0 -90000 0.000000000000 0.727642253997 0.000000000000 0.000000000000 +chr1 4398000 4399000 Sox17 810.0 -89000 0.000000000000 0.754315244689 0.000000000000 0.000000000000 +chr1 4399000 4400000 Sox17 810.0 -88000 0.000000000000 0.748521601906 0.000000000000 0.000000000000 +chr1 4400000 4401000 Sox17 810.0 -87000 0.000000000000 0.773106724449 0.000000000000 0.000000000000 +chr1 4401000 4402000 Sox17 810.0 -86000 0.000000000000 0.763860606499 0.000000000000 0.000000000000 +chr1 4402000 4403000 Sox17 810.0 -85000 0.000000000000 0.758432715512 0.000000000000 0.000000000000 +chr1 4403000 4404000 Sox17 810.0 -84000 0.000000000000 0.763116447672 0.000000000000 0.000000000000 +chr1 4404000 4405000 Sox17 810.0 -83000 0.000000000000 0.774521391995 0.000000000000 0.000000000000 +chr1 4405000 4406000 Sox17 810.0 -82000 0.000000000000 0.783854637009 0.000000000000 0.000000000000 +chr1 4406000 4407000 Sox17 810.0 -81000 0.000000000000 0.804191983653 0.000000000000 0.000000000000 +chr1 4407000 4408000 Sox17 810.0 -80000 0.000000000000 0.820453383054 0.000000000000 0.000000000000 +chr1 4408000 4409000 Sox17 810.0 -79000 0.000000000000 0.787759592071 0.000000000000 0.000000000000 +chr1 4409000 4410000 Sox17 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0.780823956737 0.600000000000 +chr1 4628000 4629000 Sox17 810.0 141000 0.000493827160 0.604143773708 0.561411536910 0.400000000000 +chr1 4629000 4630000 Sox17 810.0 142000 0.000493827160 0.632888736121 0.627838092596 0.400000000000 +chr1 4630000 4631000 Sox17 810.0 143000 0.000493827160 0.631972051038 0.598158473458 0.400000000000 +chr1 4631000 4632000 Sox17 810.0 144000 0.000493827160 0.630242651353 0.679725537759 0.400000000000 +chr1 4632000 4633000 Sox17 810.0 145000 0.000493827160 0.654163481416 0.822467901876 0.400000000000 +chr1 4633000 4634000 Sox17 810.0 146000 0.000493827160 0.637809455886 0.758034932111 0.400000000000 +chr1 4634000 4635000 Sox17 810.0 147000 0.000000000000 0.621469775934 0.000000000000 0.000000000000 +chr1 4635000 4636000 Sox17 810.0 148000 0.000246913580 0.608829914540 0.373849046024 0.200000000000 +chr1 4636000 4637000 Sox17 810.0 149000 0.000246913580 0.611099504790 0.384330795060 0.200000000000 +chr1 4637000 4638000 Sox17 810.0 150000 0.000246913580 0.594707930687 0.357594739558 0.200000000000 +chr1 4638000 4639000 Sox17 810.0 151000 0.000246913580 0.605065312757 0.377278853812 0.200000000000 +chr1 4639000 4640000 Sox17 810.0 152000 0.000246913580 0.593714719997 0.365541289385 0.200000000000 +chr1 4640000 4641000 Sox17 810.0 153000 0.000000000000 0.596420485199 0.000000000000 0.000000000000 +chr1 4641000 4642000 Sox17 810.0 154000 0.000246913580 0.606160024614 0.375556119307 0.200000000000 +chr1 4642000 4643000 Sox17 810.0 155000 0.000246913580 0.609612095406 0.363923850039 0.200000000000 +chr1 4643000 4644000 Sox17 810.0 156000 0.000246913580 0.613314445827 0.363923850039 0.200000000000 +chr1 4644000 4645000 Sox17 810.0 157000 0.000246913580 0.602751520183 0.341272987847 0.200000000000 +chr1 4645000 4646000 Sox17 810.0 158000 0.000246913580 0.585293824856 0.328987160641 0.200000000000 +chr1 4646000 4647000 Sox17 810.0 159000 0.000246913580 0.573814787091 0.320026420787 0.200000000000 +chr1 4647000 4648000 Sox17 810.0 160000 0.000246913580 0.559100492248 0.315121801274 0.200000000000 +chr1 4648000 4649000 Sox17 810.0 161000 0.000493827160 0.533506885425 0.593839639683 0.400000000000 +chr1 4649000 4650000 Sox17 810.0 162000 0.000493827160 0.591476571829 0.671402368765 0.400000000000 +chr1 4650000 4651000 Sox17 810.0 163000 0.000493827160 0.593731273297 0.682545975694 0.400000000000 +chr1 4651000 4652000 Sox17 810.0 164000 0.000493827160 0.604924746422 0.712093420742 0.400000000000 +chr1 4652000 4653000 Sox17 810.0 165000 0.000987654321 0.620870359018 1.516069864221 0.800000000000 +chr1 4653000 4654000 Sox17 810.0 166000 0.000987654321 0.653063136379 1.644935803753 0.800000000000 +chr1 4654000 4655000 Sox17 810.0 167000 0.000987654321 0.616215444951 1.574101247046 0.800000000000 +chr1 4655000 4656000 Sox17 810.0 168000 0.001481481481 0.383862623411 2.295259259717 1.200000000000 +chr1 4656000 4657000 Sox17 810.0 169000 0.001728395062 0.399152078371 2.419023237597 1.400000000000 +chr1 4657000 4658000 Sox17 810.0 170000 0.001234567901 0.414341970499 1.671682727052 1.000000000000 +chr1 4658000 4659000 Sox17 810.0 171000 0.000987654321 0.601961893812 1.353856628464 0.800000000000 +chr1 4659000 4660000 Sox17 810.0 172000 0.000987654321 0.591031149544 1.270220697103 0.800000000000 +chr1 4660000 4661000 Sox17 810.0 173000 0.000493827160 0.574110012150 0.647612520865 0.400000000000 +chr1 4661000 4662000 Sox17 810.0 174000 0.000246913580 0.594064541193 0.342694958640 0.200000000000 +chr1 4662000 4663000 Sox17 810.0 175000 0.000246913580 0.586742846341 0.354512026264 0.200000000000 +chr1 4663000 4664000 Sox17 810.0 176000 0.000246913580 0.580281241496 0.349986340790 0.200000000000 +chr1 4664000 4665000 Sox17 810.0 177000 0.000246913580 0.600664600573 0.373849046024 0.200000000000 +chr1 4665000 4666000 Sox17 810.0 178000 0.000493827160 0.611923543314 0.775913114612 0.400000000000 +chr1 4666000 4667000 Sox17 810.0 179000 0.000246913580 0.616982108456 0.395417260391 0.200000000000 +chr1 4667000 4668000 Sox17 810.0 180000 0.000246913580 0.632990312064 0.417496396239 0.200000000000 +chr1 4668000 4669000 Sox17 810.0 181000 0.000246913580 0.637219432588 0.419626479907 0.200000000000 +chr1 4669000 4670000 Sox17 810.0 182000 0.000246913580 0.649572741436 0.442187043505 0.200000000000 +chr1 4670000 4671000 Sox17 810.0 183000 0.000000000000 0.640768493097 0.000000000000 0.000000000000 +chr1 4671000 4672000 Sox17 810.0 184000 0.000246913580 0.624583606023 0.401203854492 0.200000000000 +chr1 4672000 4673000 Sox17 810.0 185000 0.000246913580 0.617559413959 0.395417260391 0.200000000000 +chr1 4673000 4674000 Sox17 810.0 186000 0.000246913580 0.647906480781 0.437482925987 0.200000000000 +chr1 4674000 4675000 Sox17 810.0 187000 0.000246913580 0.651241359569 0.444577243757 0.200000000000 +chr1 4675000 4676000 Sox17 810.0 188000 0.000493827160 0.647869186187 0.879644813784 0.400000000000 +chr1 4676000 4677000 Sox17 810.0 189000 0.000246913580 0.671654971880 0.478179012441 0.200000000000 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0.250000000000 +chr1 4687000 4688000 Sox17 810.0 200000 0.000411522634 0.637624930855 0.699377466512 0.333333333333
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.3 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 14100000 14101000 Eya1 832.0 -200000 0.000400641026 0.880044890460 2.426424093120 0.333333333333 +chr1 14101000 14102000 Eya1 832.0 -199000 0.000300480769 0.852151439574 1.429857059822 0.250000000000 +chr1 14102000 14103000 Eya1 832.0 -198000 0.000240384615 0.820756603944 0.931069711724 0.200000000000 +chr1 14103000 14104000 Eya1 832.0 -197000 0.000240384615 0.814190727178 0.889688835341 0.200000000000 +chr1 14104000 14105000 Eya1 832.0 -196000 0.000240384615 0.827190062074 0.976487746811 0.200000000000 +chr1 14105000 14106000 Eya1 832.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 14106000 14107000 Eya1 832.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 14107000 14108000 Eya1 832.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 14108000 14109000 Eya1 832.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 14109000 14110000 Eya1 832.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 14110000 14111000 Eya1 832.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 14111000 14112000 Eya1 832.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 14112000 14113000 Eya1 832.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 14113000 14114000 Eya1 832.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 14114000 14115000 Eya1 832.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 14115000 14116000 Eya1 832.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 14116000 14117000 Eya1 832.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 14117000 14118000 Eya1 832.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 14118000 14119000 Eya1 832.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 14119000 14120000 Eya1 832.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 14120000 14121000 Eya1 832.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 14121000 14122000 Eya1 832.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 14122000 14123000 Eya1 832.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 14123000 14124000 Eya1 832.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 14124000 14125000 Eya1 832.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 14125000 14126000 Eya1 832.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 14126000 14127000 Eya1 832.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 14127000 14128000 Eya1 832.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 14128000 14129000 Eya1 832.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 14129000 14130000 Eya1 832.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 14130000 14131000 Eya1 832.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 14131000 14132000 Eya1 832.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 14132000 14133000 Eya1 832.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 14133000 14134000 Eya1 832.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 14134000 14135000 Eya1 832.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 14135000 14136000 Eya1 832.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 14136000 14137000 Eya1 832.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 14137000 14138000 Eya1 832.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 14138000 14139000 Eya1 832.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 14139000 14140000 Eya1 832.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 14140000 14141000 Eya1 832.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000 +chr1 14141000 14142000 Eya1 832.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000 +chr1 14142000 14143000 Eya1 832.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000 +chr1 14143000 14144000 Eya1 832.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000 +chr1 14144000 14145000 Eya1 832.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000 +chr1 14145000 14146000 Eya1 832.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 14146000 14147000 Eya1 832.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 14147000 14148000 Eya1 832.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 14148000 14149000 Eya1 832.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 14149000 14150000 Eya1 832.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 14150000 14151000 Eya1 832.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 14151000 14152000 Eya1 832.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 14152000 14153000 Eya1 832.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 14153000 14154000 Eya1 832.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000 +chr1 14154000 14155000 Eya1 832.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000 +chr1 14155000 14156000 Eya1 832.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000 +chr1 14156000 14157000 Eya1 832.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000 +chr1 14157000 14158000 Eya1 832.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000 +chr1 14158000 14159000 Eya1 832.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000 +chr1 14159000 14160000 Eya1 832.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000 +chr1 14160000 14161000 Eya1 832.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000 +chr1 14161000 14162000 Eya1 832.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000 +chr1 14162000 14163000 Eya1 832.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000 +chr1 14163000 14164000 Eya1 832.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000 +chr1 14164000 14165000 Eya1 832.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000 +chr1 14165000 14166000 Eya1 832.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000 +chr1 14166000 14167000 Eya1 832.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000 +chr1 14167000 14168000 Eya1 832.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000 +chr1 14168000 14169000 Eya1 832.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000 +chr1 14169000 14170000 Eya1 832.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000 +chr1 14170000 14171000 Eya1 832.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000 +chr1 14171000 14172000 Eya1 832.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000 +chr1 14172000 14173000 Eya1 832.0 -128000 0.000000000000 0.809423175635 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14369000 Eya1 832.0 68000 0.001201923077 0.547265021096 0.998403930008 1.000000000000 +chr1 14369000 14370000 Eya1 832.0 69000 0.000961538462 0.465980642540 0.790834520303 0.800000000000 +chr1 14370000 14371000 Eya1 832.0 70000 0.000721153846 0.444796187147 0.581636768784 0.600000000000 +chr1 14371000 14372000 Eya1 832.0 71000 0.000480769231 0.428059180779 0.375044474064 0.400000000000 +chr1 14372000 14373000 Eya1 832.0 72000 0.000480769231 0.412214629831 0.383119594078 0.400000000000 +chr1 14373000 14374000 Eya1 832.0 73000 0.000480769231 0.409759647919 0.396396015753 0.400000000000 +chr1 14374000 14375000 Eya1 832.0 74000 0.000480769231 0.393442654531 0.381295215348 0.400000000000 +chr1 14375000 14376000 Eya1 832.0 75000 0.000480769231 0.408748776277 0.371563782862 0.400000000000 +chr1 14376000 14377000 Eya1 832.0 76000 0.000480769231 0.414669054354 0.368995369597 0.400000000000 +chr1 14377000 14378000 Eya1 832.0 77000 0.000480769231 0.420440038855 0.357464264211 0.400000000000 +chr1 14378000 14379000 Eya1 832.0 78000 0.000480769231 0.423235388129 0.393474177778 0.400000000000 +chr1 14379000 14380000 Eya1 832.0 79000 0.000961538462 0.424768297386 0.798723144006 0.800000000000 +chr1 14380000 14381000 Eya1 832.0 80000 0.000721153846 0.458578421689 0.630488151323 0.600000000000 +chr1 14381000 14382000 Eya1 832.0 81000 0.000721153846 0.452159184220 0.614363134542 0.600000000000 +chr1 14382000 14383000 Eya1 832.0 82000 0.001442307692 0.531662545053 1.241426282299 1.200000000000 +chr1 14383000 14384000 Eya1 832.0 83000 0.001201923077 0.544539152402 0.905791800808 1.000000000000 +chr1 14384000 14385000 Eya1 832.0 84000 0.000721153846 0.431883914707 0.511097841780 0.600000000000 +chr1 14385000 14386000 Eya1 832.0 85000 0.000961538462 0.408620507080 0.680016944466 0.800000000000 +chr1 14386000 14387000 Eya1 832.0 86000 0.001682692308 0.578356261020 1.306536052373 1.400000000000 +chr1 14387000 14388000 Eya1 832.0 87000 0.000961538462 0.383191453565 0.711751068273 0.800000000000 +chr1 14388000 14389000 Eya1 832.0 88000 0.000961538462 0.391467791454 0.707037485005 0.800000000000 +chr1 14389000 14390000 Eya1 832.0 89000 0.001201923077 0.597641299244 0.976487746018 1.000000000000 +chr1 14390000 14391000 Eya1 832.0 90000 0.001201923077 0.577027626513 0.983685444445 1.000000000000 +chr1 14391000 14392000 Eya1 832.0 91000 0.000721153846 0.415388228662 0.566547135970 0.600000000000 +chr1 14392000 14393000 Eya1 832.0 92000 0.000721153846 0.457521466073 0.635492025580 0.600000000000 +chr1 14393000 14394000 Eya1 832.0 93000 0.000961538462 0.481878108523 0.879912034881 0.800000000000 +chr1 14394000 14395000 Eya1 832.0 94000 0.000961538462 0.485654072445 0.806770732420 0.800000000000 +chr1 14395000 14396000 Eya1 832.0 95000 0.000721153846 0.470520014646 0.580231849042 0.600000000000 +chr1 14396000 14397000 Eya1 832.0 96000 0.000721153846 0.451356425790 0.563887290240 0.600000000000 +chr1 14397000 14398000 Eya1 832.0 97000 0.000721153846 0.458000704387 0.584467118044 0.600000000000 +chr1 14398000 14399000 Eya1 832.0 98000 0.000480769231 0.454705613751 0.380389525993 0.400000000000 +chr1 14399000 14400000 Eya1 832.0 99000 0.000240384615 0.466062200428 0.204265293878 0.200000000000 +chr1 14400000 14401000 Eya1 832.0 100000 0.000721153846 0.485559847885 0.684376027315 0.600000000000 +chr1 14401000 14402000 Eya1 832.0 101000 0.000480769231 0.476647654186 0.488243872910 0.400000000000 +chr1 14402000 14403000 Eya1 832.0 102000 0.000721153846 0.458905220217 0.712807079120 0.600000000000 +chr1 14403000 14404000 Eya1 832.0 103000 0.000721153846 0.494251471435 0.787593395411 0.600000000000 +chr1 14404000 14405000 Eya1 832.0 104000 0.000961538462 0.496762683299 1.000899939643 0.800000000000 +chr1 14405000 14406000 Eya1 832.0 105000 0.000961538462 0.490944103656 0.958946050621 0.800000000000 +chr1 14406000 14407000 Eya1 832.0 106000 0.001201923077 0.494608472741 1.170643204852 1.000000000000 +chr1 14407000 14408000 Eya1 832.0 107000 0.000961538462 0.500850258886 0.899685339184 0.800000000000 +chr1 14408000 14409000 Eya1 832.0 108000 0.001201923077 0.503477555567 1.096876646200 1.000000000000 +chr1 14409000 14410000 Eya1 832.0 109000 0.000961538462 0.499669178563 0.909909036298 0.800000000000 +chr1 14410000 14411000 Eya1 832.0 110000 0.000480769231 0.503445250814 0.471011736562 0.400000000000 +chr1 14411000 14412000 Eya1 832.0 111000 0.000480769231 0.472832134979 0.446083538620 0.400000000000 +chr1 14412000 14413000 Eya1 832.0 112000 0.000480769231 0.479967223270 0.457554258272 0.400000000000 +chr1 14413000 14414000 Eya1 832.0 113000 0.000240384615 0.490923249210 0.234815235231 0.200000000000 +chr1 14414000 14415000 Eya1 832.0 114000 0.000480769231 0.453380733495 0.462843902917 0.400000000000 +chr1 14415000 14416000 Eya1 832.0 115000 0.000480769231 0.469666167625 0.466892100350 0.400000000000 +chr1 14416000 14417000 Eya1 832.0 116000 0.000240384615 0.505935664500 0.268697970519 0.200000000000 +chr1 14417000 14418000 Eya1 832.0 117000 0.000240384615 0.523376482067 0.274219161738 0.200000000000 +chr1 14418000 14419000 Eya1 832.0 118000 0.000480769231 0.529451256365 0.556055522474 0.400000000000 +chr1 14419000 14420000 Eya1 832.0 119000 0.000240384615 0.533356831096 0.271430492274 0.200000000000 +chr1 14420000 14421000 Eya1 832.0 120000 0.000480769231 0.516584121708 0.535598630183 0.400000000000 +chr1 14421000 14422000 Eya1 832.0 121000 0.000480769231 0.535771528777 0.526789442119 0.400000000000 +chr1 14422000 14423000 Eya1 832.0 122000 0.000480769231 0.530490537983 0.541026994721 0.400000000000 +chr1 14423000 14424000 Eya1 832.0 123000 0.000240384615 0.530562527645 0.276110328386 0.200000000000 +chr1 14424000 14425000 Eya1 832.0 124000 0.000480769231 0.545553903451 0.586608023254 0.400000000000 +chr1 14425000 14426000 Eya1 832.0 125000 0.000240384615 0.564891705893 0.320287980913 0.200000000000 +chr1 14426000 14427000 Eya1 832.0 126000 0.001682692308 0.459648553557 2.091432710060 1.400000000000 +chr1 14427000 14428000 Eya1 832.0 127000 0.001923076923 0.455089832644 2.444946418284 1.600000000000 +chr1 14428000 14429000 Eya1 832.0 128000 0.001923076923 0.440214033666 2.562303847300 1.600000000000 +chr1 14429000 14430000 Eya1 832.0 129000 0.001682692308 0.449296940099 2.164107978537 1.400000000000 +chr1 14430000 14431000 Eya1 832.0 130000 0.002403846154 0.144092517424 2.890685746055 2.000000000000 +chr1 14431000 14432000 Eya1 832.0 131000 0.001201923077 0.438180156291 1.570039121874 1.000000000000 +chr1 14432000 14433000 Eya1 832.0 132000 0.000961538462 0.585853557394 1.286297112140 0.800000000000 +chr1 14433000 14434000 Eya1 832.0 133000 0.000961538462 0.595436468036 1.160463698084 0.800000000000 +chr1 14434000 14435000 Eya1 832.0 134000 0.001442307692 0.396906108679 1.812950834534 1.200000000000 +chr1 14435000 14436000 Eya1 832.0 135000 0.000721153846 0.604088556070 0.949470299058 0.600000000000 +chr1 14436000 14437000 Eya1 832.0 136000 0.000480769231 0.588739365234 0.580231849042 0.400000000000 +chr1 14437000 14438000 Eya1 832.0 137000 0.000480769231 0.567698248117 0.541026994721 0.400000000000 +chr1 14438000 14439000 Eya1 832.0 138000 0.000480769231 0.545110967143 0.602045076614 0.400000000000 +chr1 14439000 14440000 Eya1 832.0 139000 0.000000000000 0.585442994010 0.000000000000 0.000000000000 +chr1 14440000 14441000 Eya1 832.0 140000 0.000000000000 0.584686184662 0.000000000000 0.000000000000 +chr1 14441000 14442000 Eya1 832.0 141000 0.000000000000 0.604143773708 0.000000000000 0.000000000000 +chr1 14442000 14443000 Eya1 832.0 142000 0.000000000000 0.632888736121 0.000000000000 0.000000000000 +chr1 14443000 14444000 Eya1 832.0 143000 0.000000000000 0.631972051038 0.000000000000 0.000000000000 +chr1 14444000 14445000 Eya1 832.0 144000 0.000240384615 0.630242651353 0.330876012971 0.200000000000 +chr1 14445000 14446000 Eya1 832.0 145000 0.000961538462 0.654163481416 1.601439905096 0.800000000000 +chr1 14446000 14447000 Eya1 832.0 146000 0.000961538462 0.637809455886 1.475981478388 0.800000000000 +chr1 14447000 14448000 Eya1 832.0 147000 0.001442307692 0.378530224066 2.107157767708 1.200000000000 +chr1 14448000 14449000 Eya1 832.0 148000 0.001682692308 0.391170085460 2.547745301633 1.400000000000 +chr1 14449000 14450000 Eya1 832.0 149000 0.002163461538 0.388900495210 3.367513817293 1.800000000000 +chr1 14450000 14451000 Eya1 832.0 150000 0.002163461538 0.405292069313 3.133251984828 1.800000000000 +chr1 14451000 14452000 Eya1 832.0 151000 0.002163461538 0.394934687243 3.305724572467 1.800000000000 +chr1 14452000 14453000 Eya1 832.0 152000 0.002163461538 0.406285280003 3.202879807229 1.800000000000 +chr1 14453000 14454000 Eya1 832.0 153000 0.001923076923 0.403579514801 2.872537943893 1.600000000000 +chr1 14454000 14455000 Eya1 832.0 154000 0.001201923077 0.393839975386 1.828127744223 1.000000000000 +chr1 14455000 14456000 Eya1 832.0 155000 0.000480769231 0.609612095406 0.708601727240 0.400000000000 +chr1 14456000 14457000 Eya1 832.0 156000 0.000721153846 0.613314445827 1.062902590860 0.600000000000 +chr1 14457000 14458000 Eya1 832.0 157000 0.000240384615 0.602751520183 0.332248942495 0.200000000000 +chr1 14458000 14459000 Eya1 832.0 158000 0.000721153846 0.585293824856 0.960863942738 0.600000000000 +chr1 14459000 14460000 Eya1 832.0 159000 0.000721153846 0.573814787091 0.934692551098 0.600000000000 +chr1 14460000 14461000 Eya1 832.0 160000 0.001682692308 0.440899507752 2.147524775510 1.400000000000 +chr1 14461000 14462000 Eya1 832.0 161000 0.001923076923 0.466493114575 2.312548596844 1.600000000000 +chr1 14462000 14463000 Eya1 832.0 162000 0.002163461538 0.408523428171 2.941420233350 1.800000000000 +chr1 14463000 14464000 Eya1 832.0 163000 0.001682692308 0.406268726703 2.325742597467 1.400000000000 +chr1 14464000 14465000 Eya1 832.0 164000 0.001682692308 0.395075253578 2.426424095919 1.400000000000 +chr1 14465000 14466000 Eya1 832.0 165000 0.000721153846 0.620870359018 1.106986108791 0.600000000000 +chr1 14466000 14467000 Eya1 832.0 166000 0.000240384615 0.653063136379 0.400359976274 0.200000000000 +chr1 14467000 14468000 Eya1 832.0 167000 0.000000000000 0.616215444951 0.000000000000 0.000000000000 +chr1 14468000 14469000 Eya1 832.0 168000 0.000000000000 0.616137376589 0.000000000000 0.000000000000 +chr1 14469000 14470000 Eya1 832.0 169000 0.000000000000 0.600847921629 0.000000000000 0.000000000000 +chr1 14470000 14471000 Eya1 832.0 170000 0.000000000000 0.585658029501 0.000000000000 0.000000000000 +chr1 14471000 14472000 Eya1 832.0 171000 0.000480769231 0.601961893812 0.659028767461 0.400000000000 +chr1 14472000 14473000 Eya1 832.0 172000 0.000480769231 0.591031149544 0.618316565296 0.400000000000 +chr1 14473000 14474000 Eya1 832.0 173000 0.000480769231 0.574110012150 0.630488151323 0.400000000000 +chr1 14474000 14475000 Eya1 832.0 174000 0.000480769231 0.594064541193 0.667266626197 0.400000000000 +chr1 14475000 14476000 Eya1 832.0 175000 0.000480769231 0.586742846341 0.690275820369 0.400000000000 +chr1 14476000 14477000 Eya1 832.0 176000 0.000240384615 0.580281241496 0.340731894279 0.200000000000 +chr1 14477000 14478000 Eya1 832.0 177000 0.000480769231 0.600664600573 0.727927229038 0.400000000000 +chr1 14478000 14479000 Eya1 832.0 178000 0.000480769231 0.611923543314 0.755396181293 0.400000000000 +chr1 14479000 14480000 Eya1 832.0 179000 0.000480769231 0.616982108456 0.769923031050 0.400000000000 +chr1 14480000 14481000 Eya1 832.0 180000 0.000480769231 0.632990312064 0.812913656138 0.400000000000 +chr1 14481000 14482000 Eya1 832.0 181000 0.000240384615 0.637219432588 0.408530587410 0.200000000000 +chr1 14482000 14483000 Eya1 832.0 182000 0.000000000000 0.649572741436 0.000000000000 0.000000000000 +chr1 14483000 14484000 Eya1 832.0 183000 0.000000000000 0.640768493097 0.000000000000 0.000000000000 +chr1 14484000 14485000 Eya1 832.0 184000 0.000240384615 0.624583606023 0.390595098725 0.200000000000 +chr1 14485000 14486000 Eya1 832.0 185000 0.000961538462 0.617559413959 1.539846062099 0.800000000000 +chr1 14486000 14487000 Eya1 832.0 186000 0.000961538462 0.647906480781 1.703659471393 0.800000000000 +chr1 14487000 14488000 Eya1 832.0 187000 0.000961538462 0.651241359569 1.731286381939 0.800000000000 +chr1 14488000 14489000 Eya1 832.0 188000 0.001201923077 0.352130813813 2.140962437394 1.000000000000 +chr1 14489000 14490000 Eya1 832.0 189000 0.001442307692 0.328345028120 2.793209135173 1.200000000000 +chr1 14490000 14491000 Eya1 832.0 190000 0.000721153846 0.671941112135 1.404771845823 0.600000000000 +chr1 14491000 14492000 Eya1 832.0 191000 0.001442307692 0.341250160004 2.669066506024 1.200000000000 +chr1 14492000 14493000 Eya1 832.0 192000 0.002403846154 0.068166431915 4.399560174407 2.000000000000 +chr1 14493000 14494000 Eya1 832.0 193000 0.002163461538 0.323005466215 4.289571172663 1.800000000000 +chr1 14494000 14495000 Eya1 832.0 194000 0.001682692308 0.330674933407 3.239907320421 1.400000000000 +chr1 14495000 14496000 Eya1 832.0 195000 0.002163461538 0.314837109105 4.421153111551 1.800000000000 +chr1 14496000 14497000 Eya1 832.0 196000 0.001682692308 0.314745345249 3.438674642317 1.400000000000 +chr1 14497000 14498000 Eya1 832.0 197000 0.001442307692 0.335210836347 2.729727108893 1.200000000000 +chr1 14498000 14499000 Eya1 832.0 198000 0.002644230769 0.083110512066 4.317607586564 2.200000000000 +chr1 14499000 14500000 Eya1 832.0 199000 0.003305288462 0.073447408129 5.764345200343 2.750000000000 +chr1 14500000 14501000 Eya1 832.0 200000 0.003605769231 1.000000000000 6.127958811148 3.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.3 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 18893000 18894000 Tfap2d 800.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 18894000 18895000 Tfap2d 800.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 18895000 18896000 Tfap2d 800.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 18896000 18897000 Tfap2d 800.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 18897000 18898000 Tfap2d 800.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 18898000 18899000 Tfap2d 800.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 18899000 18900000 Tfap2d 800.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 18900000 18901000 Tfap2d 800.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 18901000 18902000 Tfap2d 800.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 18902000 18903000 Tfap2d 800.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 18903000 18904000 Tfap2d 800.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 18904000 18905000 Tfap2d 800.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 18905000 18906000 Tfap2d 800.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 18906000 18907000 Tfap2d 800.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 18907000 18908000 Tfap2d 800.0 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4.200000000000 +chr1 19108000 19109000 Tfap2d 800.0 15000 0.005000000000 0.407768479558 1.075902777761 4.000000000000 +chr1 19109000 19110000 Tfap2d 800.0 16000 0.006250000000 0.296796459030 1.372361156777 5.000000000000 +chr1 19110000 19111000 Tfap2d 800.0 17000 0.005250000000 0.364935193677 1.250015993657 4.200000000000 +chr1 19111000 19112000 Tfap2d 800.0 18000 0.005750000000 0.358191105866 1.409361387122 4.600000000000 +chr1 19112000 19113000 Tfap2d 800.0 19000 0.005000000000 0.348439048335 1.256979245277 4.000000000000 +chr1 19113000 19114000 Tfap2d 800.0 20000 0.005500000000 0.323804711711 1.467986578418 4.400000000000 +chr1 19114000 19115000 Tfap2d 800.0 21000 0.003000000000 0.626925244653 0.823145387262 2.400000000000 +chr1 19115000 19116000 Tfap2d 800.0 22000 0.002500000000 0.623867937782 0.714805793911 2.000000000000 +chr1 19116000 19117000 Tfap2d 800.0 23000 0.001750000000 0.783547557416 0.558891778589 1.400000000000 +chr1 19117000 19118000 Tfap2d 800.0 24000 0.000500000000 0.225115312719 0.162646240224 0.400000000000 +chr1 19118000 19119000 Tfap2d 800.0 25000 0.000000000000 0.221629958422 0.000000000000 0.000000000000 +chr1 19119000 19120000 Tfap2d 800.0 26000 0.000000000000 0.253083049210 0.000000000000 0.000000000000 +chr1 19120000 19121000 Tfap2d 800.0 27000 0.000750000000 0.245782528167 0.294604510589 0.600000000000 +chr1 19121000 19122000 Tfap2d 800.0 28000 0.000750000000 0.257054437971 0.283247874151 0.600000000000 +chr1 19122000 19123000 Tfap2d 800.0 29000 0.001250000000 0.730150582959 0.496866795945 1.000000000000 +chr1 19123000 19124000 Tfap2d 800.0 30000 0.001750000000 0.732642811477 0.706574697058 1.400000000000 +chr1 19124000 19125000 Tfap2d 800.0 31000 0.002250000000 0.758317068786 0.905161684870 1.800000000000 +chr1 19125000 19126000 Tfap2d 800.0 32000 0.002750000000 0.480737541697 1.153682147360 2.200000000000 +chr1 19126000 19127000 Tfap2d 800.0 33000 0.003000000000 0.484322511884 1.279511523854 2.400000000000 +chr1 19127000 19128000 Tfap2d 800.0 34000 0.002500000000 0.481543605756 1.111814085462 2.000000000000 +chr1 19128000 19129000 Tfap2d 800.0 35000 0.002750000000 0.449902561688 1.293818679354 2.200000000000 +chr1 19129000 19130000 Tfap2d 800.0 36000 0.002250000000 0.731093851644 1.087770500930 1.800000000000 +chr1 19130000 19131000 Tfap2d 800.0 37000 0.001250000000 0.743077286604 0.619604724633 1.000000000000 +chr1 19131000 19132000 Tfap2d 800.0 38000 0.001000000000 0.281762440079 0.507773628084 0.800000000000 +chr1 19132000 19133000 Tfap2d 800.0 39000 0.001500000000 0.722688489844 0.766333205611 1.200000000000 +chr1 19133000 19134000 Tfap2d 800.0 40000 0.002000000000 0.741317064321 0.961326118464 1.600000000000 +chr1 19134000 19135000 Tfap2d 800.0 41000 0.002250000000 0.735204850266 1.100549008579 1.800000000000 +chr1 19135000 19136000 Tfap2d 800.0 42000 0.002500000000 0.430167489874 1.206882246590 2.000000000000 +chr1 19136000 19137000 Tfap2d 800.0 43000 0.003500000000 0.432759024319 1.763764372185 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0.381647233130 0.641810212045 0.800000000000 +chr1 19147000 19148000 Tfap2d 800.0 54000 0.000750000000 0.386115535443 0.523741352272 0.600000000000 +chr1 19148000 19149000 Tfap2d 800.0 55000 0.001000000000 0.398615654765 0.708722340602 0.800000000000 +chr1 19149000 19150000 Tfap2d 800.0 56000 0.000500000000 0.398461693032 0.355875534288 0.400000000000 +chr1 19150000 19151000 Tfap2d 800.0 57000 0.000500000000 0.405640947317 0.365240679736 0.400000000000 +chr1 19151000 19152000 Tfap2d 800.0 58000 0.000750000000 0.405617224646 0.546662198984 0.600000000000 +chr1 19152000 19153000 Tfap2d 800.0 59000 0.000500000000 0.392564680967 0.361279284049 0.400000000000 +chr1 19153000 19154000 Tfap2d 800.0 60000 0.000250000000 0.393712331703 0.171700773197 0.200000000000 +chr1 19154000 19155000 Tfap2d 800.0 61000 0.000500000000 0.397980382520 0.352113636434 0.400000000000 +chr1 19155000 19156000 Tfap2d 800.0 62000 0.000500000000 0.410248598681 0.376809389136 0.400000000000 +chr1 19156000 19157000 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+chr1 19281000 19282000 Tfap2d 800.0 188000 0.000500000000 0.647869186187 0.890640373956 0.400000000000 +chr1 19282000 19283000 Tfap2d 800.0 189000 0.000000000000 0.671654971880 0.000000000000 0.000000000000 +chr1 19283000 19284000 Tfap2d 800.0 190000 0.000250000000 0.671941112135 0.486987573219 0.200000000000 +chr1 19284000 19285000 Tfap2d 800.0 191000 0.000250000000 0.658749839996 0.462638194377 0.200000000000 +chr1 19285000 19286000 Tfap2d 800.0 192000 0.000250000000 0.655383997647 0.457554258138 0.200000000000 +chr1 19286000 19287000 Tfap2d 800.0 193000 0.000500000000 0.676994533785 0.991367559904 0.400000000000 +chr1 19287000 19288000 Tfap2d 800.0 194000 0.000500000000 0.669325066593 0.962715318068 0.400000000000 +chr1 19288000 19289000 Tfap2d 800.0 195000 0.000250000000 0.685162890895 0.510888804001 0.200000000000 +chr1 19289000 19290000 Tfap2d 800.0 196000 0.000250000000 0.685254654751 0.510888804001 0.200000000000 +chr1 19290000 19291000 Tfap2d 800.0 197000 0.000250000000 0.664789163653 0.473152698875 0.200000000000 +chr1 19291000 19292000 Tfap2d 800.0 198000 0.000000000000 0.623323575813 0.000000000000 0.000000000000 +chr1 19292000 19293000 Tfap2d 800.0 199000 0.000000000000 0.643728679260 0.000000000000 0.000000000000 +chr1 19293000 19294000 Tfap2d 800.0 200000 0.000000000000 0.637624930855 0.000000000000 0.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.3 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 4287000 4288000 Sox17 978.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 4288000 4289000 Sox17 978.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 4289000 4290000 Sox17 978.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 4290000 4291000 Sox17 978.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 4291000 4292000 Sox17 978.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 4292000 4293000 Sox17 978.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 4293000 4294000 Sox17 978.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 4294000 4295000 Sox17 978.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 4295000 4296000 Sox17 978.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 4296000 4297000 Sox17 978.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 4297000 4298000 Sox17 978.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 4298000 4299000 Sox17 978.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 4299000 4300000 Sox17 978.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 4300000 4301000 Sox17 978.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 4301000 4302000 Sox17 978.0 -186000 0.000000000000 0.853953368554 0.000000000000 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4371000 Sox17 978.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000 +chr1 4371000 4372000 Sox17 978.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000 +chr1 4372000 4373000 Sox17 978.0 -115000 0.000000000000 0.757379810911 0.000000000000 0.000000000000 +chr1 4373000 4374000 Sox17 978.0 -114000 0.000000000000 0.773895809279 0.000000000000 0.000000000000 +chr1 4374000 4375000 Sox17 978.0 -113000 0.000000000000 0.780251801078 0.000000000000 0.000000000000 +chr1 4375000 4376000 Sox17 978.0 -112000 0.000000000000 0.809192563048 0.000000000000 0.000000000000 +chr1 4376000 4377000 Sox17 978.0 -111000 0.000000000000 0.805959066383 0.000000000000 0.000000000000 +chr1 4377000 4378000 Sox17 978.0 -110000 0.000000000000 0.826154588365 0.000000000000 0.000000000000 +chr1 4378000 4379000 Sox17 978.0 -109000 0.000000000000 0.796608508060 0.000000000000 0.000000000000 +chr1 4379000 4380000 Sox17 978.0 -108000 0.000000000000 0.785369993572 0.000000000000 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/referencePoints.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,43 @@ +chr1 4487435 4487435 Sox17 +chr1 14300280 14300280 Eya1 +chr1 19093103 19093103 Tfap2d +chr1 19198995 19198995 Tfap2b +chr1 24202042 24202042 Col9a1 +chr1 33776741 33776741 Rab23 +chr1 38684089 38684089 Aff3 +chr1 42753991 42753991 Pou3f3 +chr1 52176282 52176282 Stat1 +chr1 52557292 52557292 Nab1 +chr1 53118507 53118507 Mstn +chr1 57028178 57028178 Satb2 +chr1 59821123 59821123 Bmpr2 +chr1 66991630 66991630 Myl1 +chr1 74648029 74648029 Stk36 +chr1 74818466 74818466 Wnt6 +chr1 74838593 74838593 Wnt10a +chr1 74998246 74998246 Ihh +chr1 75356867 75356867 Des +chr1 77511663 77511663 Epha4 +chr1 78193711 78193711 Pax3 +chr1 89102386 89102386 Chrng +chr1 93355905 93355905 Per2 +chr1 93698054 93698054 Twist2 +chr1 94076918 94076918 Hdac4 +chr1 107677300 107677300 Tnfrsf11a +chr1 120950196 120950196 Gli2 +chr1 122499064 122499064 En1 +chr1 127808791 127808791 Lypd1 +chr1 135934092 135934092 Fmod +chr1 136186581 136186581 MyoG +chr1 152313295 152313295 Prg4 +chr1 164004278 164006270 mm712 +chr1 164147754 164147754 Dnm3os +chr1 165243781 165243781 Prrx1 +chr1 165333772 165333772 Gorab +chr1 169619689 169619689 Lmx1a +chr1 170362300 170362300 Pbx1 +chr1 180249284 180249284 Gm16586 +chr1 182823250 182823250 Lefty2 +chr1 182865170 182865170 Lefty1 +chr1 188529871 188529871 Tgfb2 +chr1 194979306 194979306 Irf6
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/referencePoints_chicViewpoint.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,4 @@ +chr1 4487435 4487435 Sox17 +chr1 14300280 14300280 Eya1 +chr1 19093103 19093103 Tfap2d +
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicFindRestrictionSites/reference_genome.fasta Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,2 @@ +>chr1 +CTACGGTACGAACGTACGGTACGcgtaCGNAGTCATG
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicFindRestrictionSites/restriction_sites.bed Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,4 @@ +chr1 5 9 . 0 + +chr1 13 17 . 0 + +chr1 18 22 . 0 + +chr1 24 28 . 0 +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicInfo/hicInfo_output.txt Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,10 @@ +# Matrix information file. Created with HiCExplorer's hicInfo version 3.3 +File: matrix_name.h5 +Size: 33,754 +Bin_length: 5000 +Sum of matrix: 35778.0 +Chromosomes: chr2L, chr2LHet, chr2R, chr2RHet, chr3L, chr3LHet, chr3R, chr3RHet, chr4, chrM, chrUextra, chrU, chrX, chrXHet, chrYHet +Non-zero elements: 69,213 +Minimum (non zero): 1 +Maximum: 8 +NaN bins: 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicInfo_output.txt Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,10 @@ +# Matrix information file. Created with HiCExplorer's hicInfo version 3.1 +File: matrix_name.h5 +Size: 3,383 +Bin_length: 50000 +Sum of matrix: 32798.5 +Chromosomes: chr2RHet, chr3RHet, chr2LHet, chr4, chrYHet, chr3L, chr2L, chrU, chrX, chrXHet, chr2R, chr3R, chrUextra, chrM, chr3LHet +Non-zero elements: 45,981 +Minimum (non zero): 1 +Maximum: 68 +NaN bins: 664 \ No newline at end of file
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicPlotSVL/p_values.txt Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,4 @@ +# Created with HiCExplorer's hicPlotSVL 3.3 +# Short range vs long range contacts per chromosome, p-values of each distribution against each other distribution with Wilcoxon rank-sum +# Short range contacts: <= 2000000 +0_small_test_matrix.h5 1_small_test_matrix.h5 1.0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicPlotSVL/ratios.txt Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,8 @@ +# Created with HiCExplorer's hicPlotSVL 3.3 +# Short range vs long range contacts per chromosome: raw data +# Short range contacts: <= 2000000 +# 0_small_test_matrix.h5 1_small_test_matrix.h5 +# Chromosome Ratio Sum <= 2000000 Sum > 2000000 Ratio Sum <= 2000000 Sum > 2000000 +chr2L 4.7639676113360325 11767 2470 4.7639676113360325 11767 2470 +chr3L 4.8960869565217395 11261 2300 4.8960869565217395 11261 2300 +chr4
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicQuickQC/QC.log Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,29 @@ + +File /tmp/tmpp4d6khlj.h5 +Sequenced reads 983 +Min rest. site distance 300 +Max library insert size 1000 + +# count (percentage w.r.t. total sequenced reads) +Pairs mappable, unique and high quality 300 (30.52) +Hi-C contacts 215 (21.87) +One mate unmapped 506 (51.48) +One mate not unique 13 (1.32) +Low mapping quality 164 (16.68) + +# count (percentage w.r.t. mappable, unique and high quality pairs) +dangling end 0 (0.00) +self ligation (removed) 0 (0.00) +One mate not close to rest site 0 (0.00) +same fragment 85 (28.33) +self circle 0 (0.00) +duplicated pairs 0 (0.00) + +# count (percentage w.r.t. total valid pairs used) +inter chromosomal 24 (11.16) +Intra short range (< 20kb) 61 (28.37) +Intra long range (>= 20kb) 130 (60.47) +Read pair type: inward pairs 42 (19.53) +Read pair type: outward pairs 66 (30.70) +Read pair type: left pairs 48 (22.33) +Read pair type: right pairs 35 (16.28)
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicValidateLocations/overlap_smc3_statistics Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,7 @@ +# HiCExplorer hicValidateLocations 3.3 +# Overlap of loop file /tmp/tmpo82hqd2o/files/4/a/4/dataset_4a45db46-19b9-4b40-9d5b-d049a100e2aa.dat with protein file /tmp/tmpo82hqd2o/files/3/5/8/dataset_358b0ce7-ab08-46fc-8968-195d416429ca.dat +# +Protein peaks: 3097 +Matched Loops: 530 +Total Loops: 1007 +Loops match protein: 0.5263157894736842
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/li_32-33mb_interactions.bedgraph Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,2 @@ +X 3139841 3367043 X 2851659 3139841 28764.634828529033 +X 3139841 3367043 X 3139841 3367043 139691.503741355060
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/raw_qc_report Mon Dec 16 15:44:31 2019 -0500 @@ -0,0 +1,29 @@ + +File matrix.cool +Sequenced reads 983 +Min rest. site distance 300 +Max library insert size 1000 + +# count (percentage w.r.t. total sequenced reads) +Pairs mappable, unique and high quality 300 (30.52) +Hi-C contacts 215 (21.87) +One mate unmapped 506 (51.48) +One mate not unique 13 (1.32) +Low mapping quality 164 (16.68) + +# count (percentage w.r.t. mappable, unique and high quality pairs) +dangling end 0 (0.00) +self ligation (removed) 0 (0.00) +One mate not close to rest site 0 (0.00) +same fragment 85 (28.33) +self circle 0 (0.00) +duplicated pairs 0 (0.00) + +# count (percentage w.r.t. total valid pairs used) +inter chromosomal 24 (11.16) +Intra short range (< 20kb) 61 (28.37) +Intra long range (>= 20kb) 130 (60.47) +Read pair type: inward pairs 42 (19.53) +Read pair type: outward pairs 66 (30.70) +Read pair type: left pairs 48 (22.33) +Read pair type: right pairs 35 (16.28)