Mercurial > repos > bgruening > hicexplorer_hicbuildmatrixmicroc
comparison test-data/hicQuickQC/QC.log @ 0:0c22e9361298 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
author | bgruening |
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date | Thu, 05 Dec 2024 21:42:17 +0000 |
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-1:000000000000 | 0:0c22e9361298 |
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1 | |
2 File /tmp/tmpgf9pvov_/tmp/tmpovrpxt57.h5 | |
3 Sequenced reads 983 | |
4 Min rest. site distance 300 | |
5 Max library insert size 1000 | |
6 | |
7 # count (percentage w.r.t. total sequenced reads) | |
8 Pairs mappable, unique and high quality 300 (30.52) | |
9 Hi-C contacts 215 (21.87) | |
10 One mate unmapped 506 (51.48) | |
11 One mate not unique 13 (1.32) | |
12 Low mapping quality 164 (16.68) | |
13 | |
14 # count (percentage w.r.t. mappable, unique and high quality pairs) | |
15 dangling end GATC (restriction sequence GATC) 1 (0.33) | |
16 self ligation (removed) 0 (0.00) | |
17 One mate not close to rest site 0 (0.00) | |
18 same fragment 84 (28.00) | |
19 self circle 33 (11.00) | |
20 duplicated pairs 0 (0.00) | |
21 | |
22 # count (percentage w.r.t. total valid pairs used) | |
23 inter chromosomal 24 (11.16) | |
24 Intra short range (< 20kb) 61 (28.37) | |
25 Intra long range (>= 20kb) 130 (60.47) | |
26 Read pair type: inward pairs 42 (19.53) | |
27 Read pair type: outward pairs 66 (30.70) | |
28 Read pair type: left pairs 48 (22.33) | |
29 Read pair type: right pairs 35 (16.28) |