Mercurial > repos > bgruening > hicexplorer_hiccompartmentspolarization

diff test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed @ 0:8d764e8acdf5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa19d3b6a9d0160a13f8d1e4a99f20c4dbe937b2-dirty"
author bgruening
date Mon, 16 Dec 2019 17:26:46 -0500
parents
children c6f32406aa3c
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed	Mon Dec 16 17:26:46 2019 -0500
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+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# This file contains the p-values computed by chi2 test
+# To test the smoothed (float) values they were rounded up to the next integer
+#
+# Alpha level 0.5
+# Degrees of freedom 1
+#
+# FL-E13-5_chr1.cool	chr1_4487435_4487435	4.29  Mbp	4.69  Mbp	Sox17	Sum of interactions in fixate range: 810.0
+# MB-E10-5_chr1.cool	chr1_4487435_4487435	4.29  Mbp	4.69  Mbp	Sox17	Sum of interactions in fixate range: 978.0
+#Chromosome	Start	End	Gene	Relative distance	sum of interactions 1	target_1 raw	sum of interactions 2	target_2 raw	p-value
+chr1	4472000	4503000	Sox17	15000	810.00000	566.20000	978.00000	724.40000		0.43072
+chr1	4507000	4516000	Sox17	28000	810.00000	38.80000	978.00000	19.00000		0.00105
+chr1	4520000	4531000	Sox17	43000	810.00000	10.40000	978.00000	22.20000		0.12754
+chr1	4533000	4543000	Sox17	55000	810.00000	6.80000	978.00000	12.20000		0.40725
+chr1	4562000	4593000	Sox17	105000	810.00000	25.00000	978.00000	23.20000		0.36639
+chr1	4664000	4669000	Sox17	181000	810.00000	1.20000	978.00000	5.40000		0.16231