diff hicCorrectMatrix.xml @ 14:1e622e371512 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"

--- a/hicCorrectMatrix.xml	Mon Dec 16 14:31:21 2019 -0500
+++ b/hicCorrectMatrix.xml	Wed Feb 05 19:39:47 2020 -0500
@@ -1,5 +1,5 @@
 <tool id="hicexplorer_hiccorrectmatrix" name="@BINARY@" version="@WRAPPER_VERSION@.0">
-    <description>run Imakaev's iterative correction over a Hi-C contact matrix.</description>
+    <description>run a Hi-C matrix correction algorithm</description>
     <macros>
         <token name="@BINARY@">hicCorrectMatrix</token>
         <import>macros.xml</import>
@@ -212,7 +212,7 @@
 Hi-C contact matrix correction
 ==============================
 
-**hicCorrectMatrix** runs Imakaev's iterative correction, described in `Imakaev et al. (2012)`_, over a Hi-C matrix. For the matrix correction to be efficient,
+**hicCorrectMatrix** runs Imakaev's iterative correction, described in `Imakaev et al. (2012)`_, or Knight-Ruiz correction over a Hi-C matrix. For the matrix correction to be efficient,
 it is important to remove the unassembled scaffolds (e.g. `NT_`), mitochondrial DNA and Y chromosome and keep only full length
 chromosomes, as scaffolds create problems with matrix correction. Therefore we use the chromosome names (1-19, X, Y) here.