comparison macros.xml @ 2:ae2d7e2dfeef draft

planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 4d61b6bf2fed275ab38c226d0c4390b095a38251

1:ef86780a77ff

<macros>
    <xml name="stdio">
        <stdio>
            <exit_code range="1:" />
            <exit_code range=":-1" />
            <regex match="Error:" />
            <regex match="Exception:" />
            <regex match="EXception:" />
            <regex match="Traceback" />
        </stdio>
    </xml>

    <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
    <token name="@WRAPPER_VERSION@">1.7.2</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="2.7.13">python</requirement>
            <requirement type="package" version="@WRAPPER_VERSION@">hicexplorer</requirement>
            <yield />
        </requirements>
        <expand macro="stdio" />
        <version_command>@BINARY@ --version</version_command>
    </xml>

    <xml name="citations">
        <citations>

This tool is developed by the `Bioinformatics and Deep-Sequencing Unit`_ at the `Max Planck Institute for Immunobiology and Epigenetics`_.

.. _Bioinformatics and Deep-Sequencing Unit: http://www3.ie-freiburg.mpg.de/facilities/research-facilities/bioinformatics-and-deep-sequencing-unit/
.. _Max Planck Institute for Immunobiology and Epigenetics: http://www3.ie-freiburg.mpg.de
.. _help site: https://github.com/fidelram/deepTools/wiki/

    </token>


    <xml name="multiple_input_bams">

            ))
            </filter>
        </data>
    </xml>



</macros>

2:ae2d7e2dfeef

<macros>
    <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token>
    <token name="@WRAPPER_VERSION@">1.8</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@WRAPPER_VERSION@">hicexplorer</requirement>
            <yield />
        </requirements>
        <version_command>@BINARY@ --version</version_command>
    </xml>

    <xml name="citations">
        <citations>

This tool is developed by the `Bioinformatics and Deep-Sequencing Unit`_ at the `Max Planck Institute for Immunobiology and Epigenetics`_.

.. _Bioinformatics and Deep-Sequencing Unit: http://www3.ie-freiburg.mpg.de/facilities/research-facilities/bioinformatics-and-deep-sequencing-unit/
.. _Max Planck Institute for Immunobiology and Epigenetics: http://www3.ie-freiburg.mpg.de
.. _help site: https://hicexplorer.readthedocs.org

    </token>


    <xml name="multiple_input_bams">

            ))
            </filter>
        </data>
    </xml>

    <xml name="track_input_h5_macro">
        <param name="track_input_h5" type="data" format="h5" label="Track file h5 format"/>
    </xml>
    <xml name="track_input_bed_macro">
        <param name="track_input_bed" type="data" format="bed" label="Track file bed format"/>
    </xml>
    <xml name="track_input_bedgraph_macro">
        <param name="track_input_bedgraph" type="data" format="bedgraph" label="Track file bedgraph format"/>
    </xml>
    <xml name="track_input_bigwig_macro">
        <param name="track_input_bigwig" type="data" format="bigwig" label="Track file bigwig format"/>
    </xml>
    <xml name="track_input_bedgraph_matrix_macro">
        <param name="track_input_bedgraph_matrix" type="data" format="bedgraph" label="Track file bigwig format"/>
    </xml>
    <xml name="track_input_tabular_macro">
        <param name="track_input_tabular" type="data" format="tabular" label="Track file tabular format"/>
    </xml>
    <xml name="plot_title">
        <param name="title" type="text" optional="true" label="Plot title"/>
    </xml>

    <xml name="spacer_macro">
        <param name="spacer_width" type="float" value="" optional="True"
                label="Include spacer at the end of the track." help="Width of the spacer." />
    </xml>
    <xml name="fontsize_macro">
                    <param name="fontsize" type="integer" value="" optional="True" label="Fontsize" />
    </xml>
</macros>