Mercurial > repos > bgruening > hicexplorer_hiccorrelate
diff macros.xml @ 7:602a0c6f4bb0 draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 0456f085bac2c88b8cbddfcf12b02776d2a0d457
author | bgruening |
---|---|
date | Wed, 07 Mar 2018 03:39:03 -0500 |
parents | 8187f841afea |
children | 2d8543aeeb65 |
line wrap: on
line diff
--- a/macros.xml Tue Jan 02 10:16:20 2018 -0500 +++ b/macros.xml Wed Mar 07 03:39:03 2018 -0500 @@ -1,6 +1,13 @@ <macros> <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> - <token name="@WRAPPER_VERSION@">2.0</token> + <token name="@WRAPPER_VERSION@">2.1</token> + + <token name="@USE_RANGE@"> + #if $use_range.select_use_range == "yes_use_range": + --range $range_min:$range_max + #end if + </token> + <xml name="requirements"> <requirements> <requirement type="package" version="@WRAPPER_VERSION@">hicexplorer</requirement> @@ -19,6 +26,23 @@ <xml name="zMax"> <param argument="--zMax" name="zMax" type="float" optional="true" label="zMax for 3D plot"/> <!-- this should only be enabled when both or 3d is selected for param whatToShow --> </xml> + <xml name="use_range"> + <conditional name="use_range"> <!-- argparse specifies one argument of type min_range:max_range --> + <param name="select_use_range" type="select" label="Range restriction (in bp)" argument="--range"> + <option value="no_use_range">No restriction</option> + <option value="yes_use_range">Only consider counts within a range</option> + </param> + <when value="no_use_range"/> + <when value="yes_use_range"> + <expand macro='range' /> + </when> + </conditional> + </xml> + + <xml name="range"> + <param name="range_min" type="integer" value="" min="0"/> + <param name="range_max" type="integer" value="" min="0"/> + </xml> <xml name="colormap"> <param argument="--colorMap" name="colormap" type="select" optional="True" label="Color map to use for the heatmap" help=" Available color map names can be found here: https://matplotlib.org/examples/color/colormaps_reference.html"> @@ -300,13 +324,12 @@ <param name="pseudocount" type="float" value="1" label="Pseudocount" help="Small number to avoid dividing by zero."/> </xml> <xml name='matrix_h5_cooler_macro'> - <param name='matrix_h5_cooler' type="data" format="h5,cool" - label="Matrix to compute on."/> - + <param name='matrix_h5_cooler' type="data" format="h5,cool" + label="Matrix to compute on"/> </xml> <xml name='matrix_h5_cooler_multiple_macro'> - <param name='matrix_h5_cooler_multiple' type="data" format="h5,cool" - label="Matrix to compute on." multiple="True"/> + <param name='matrix_h5_cooler_multiple' type="data" format="h5,cool" + label="Matricies to compute on" multiple="true"/> </xml> <token name="@REFERENCES@"> @@ -556,9 +579,9 @@ <xml name="spacer_macro"> <param name="spacer_width" type="float" value="" optional="True" - label="Include spacer at the end of the track." help="Width of the spacer." /> + label="Include spacer at the end of the track." help="Width of the spacer." /> </xml> <xml name="fontsize_macro"> - <param name="fontsize" type="integer" value="" optional="True" label="Fontsize" /> + <param name="fontsize" type="integer" value="" optional="True" label="Fontsize" /> </xml> </macros>