Mercurial > repos > bgruening > hicexplorer_hicdetectloops
comparison hicDetectLoops.xml @ 7:0d6c2ff54c76 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa140a9f660eab2459e21b0b637b129d7de24c02
| author | iuc |
|---|---|
| date | Tue, 10 Jan 2023 19:20:16 +0000 |
| parents | c3f9037423bd |
| children | 0410b6aada45 |
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| 6:c3f9037423bd | 7:0d6c2ff54c76 |
|---|---|
| 69 <param argument="--chromosomes" optional='true' type="text" label="Chromosomes to include" help= "Chromosomes to include in the analysis. If not set, all chromosomes are included." /> | 69 <param argument="--chromosomes" optional='true' type="text" label="Chromosomes to include" help= "Chromosomes to include in the analysis. If not set, all chromosomes are included." /> |
| 70 <param argument="--region" optional='true' type="text" label="Chromosomes to include" help= "The format is chr:start-end." /> | 70 <param argument="--region" optional='true' type="text" label="Chromosomes to include" help= "The format is chr:start-end." /> |
| 71 <param argument="--expected" type="select" label="Method to compute the expected value"> | 71 <param argument="--expected" type="select" label="Method to compute the expected value"> |
| 72 <option value="mean" selected="True">mean</option> | 72 <option value="mean" selected="True">mean</option> |
| 73 <option value="mean_nonzero">mean_nonzero</option> | 73 <option value="mean_nonzero">mean_nonzero</option> |
| 74 <option value="mean_nonzero">mean_nonzero_ligation</option> | 74 <option value="mean_nonzero_ligation">mean_nonzero_ligation</option> |
| 75 </param> | 75 </param> |
| 76 </inputs> | 76 </inputs> |
| 77 <outputs> | 77 <outputs> |
| 78 <data name='output_loops' from_work_dir='output_loop.bedgraph' format='bedgraph' label='Computed loops' /> | 78 <data name='output_loops' from_work_dir='output_loop.bedgraph' format='bedgraph' label='Computed loops' /> |
| 79 </outputs> | 79 </outputs> |