Mercurial > repos > bgruening > hicexplorer_hicdetectloops
comparison test-data/hicQuickQC/QC.log @ 6:c3f9037423bd draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 2a0943e78bdc8ebb13f181399206a9eea37ed78f"
| author | iuc |
|---|---|
| date | Tue, 16 Mar 2021 15:32:15 +0000 |
| parents | 2d1f9759fa0e |
| children | 0410b6aada45 |
comparison
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| 5:f16ab52334dd | 6:c3f9037423bd |
|---|---|
| 1 | 1 |
| 2 File /tmp/tmpp4d6khlj.h5 | 2 File /tmp/tmp12xmnm2f.h5 |
| 3 Sequenced reads 983 | 3 Sequenced reads 983 |
| 4 Min rest. site distance 300 | 4 Min rest. site distance 300 |
| 5 Max library insert size 1000 | 5 Max library insert size 1000 |
| 6 | 6 |
| 7 # count (percentage w.r.t. total sequenced reads) | 7 # count (percentage w.r.t. total sequenced reads) |
| 10 One mate unmapped 506 (51.48) | 10 One mate unmapped 506 (51.48) |
| 11 One mate not unique 13 (1.32) | 11 One mate not unique 13 (1.32) |
| 12 Low mapping quality 164 (16.68) | 12 Low mapping quality 164 (16.68) |
| 13 | 13 |
| 14 # count (percentage w.r.t. mappable, unique and high quality pairs) | 14 # count (percentage w.r.t. mappable, unique and high quality pairs) |
| 15 dangling end 0 (0.00) | 15 dangling end GATC 1 (0.33) |
| 16 self ligation (removed) 0 (0.00) | 16 self ligation (removed) 0 (0.00) |
| 17 One mate not close to rest site 0 (0.00) | 17 One mate not close to rest site 0 (0.00) |
| 18 same fragment 85 (28.33) | 18 same fragment 84 (28.00) |
| 19 self circle 0 (0.00) | 19 self circle 33 (11.00) |
| 20 duplicated pairs 0 (0.00) | 20 duplicated pairs 0 (0.00) |
| 21 | 21 |
| 22 # count (percentage w.r.t. total valid pairs used) | 22 # count (percentage w.r.t. total valid pairs used) |
| 23 inter chromosomal 24 (11.16) | 23 inter chromosomal 24 (11.16) |
| 24 Intra short range (< 20kb) 61 (28.37) | 24 Intra short range (< 20kb) 61 (28.37) |