Mercurial > repos > bgruening > hicexplorer_hicdetectloops
diff hicDetectLoops.xml @ 3:1119cdd14ddb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
author | iuc |
---|---|
date | Tue, 24 Mar 2020 14:00:59 -0400 |
parents | ce8d154fc6b5 |
children | c3f9037423bd |
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--- a/hicDetectLoops.xml Wed Mar 11 17:08:20 2020 -0400 +++ b/hicDetectLoops.xml Tue Mar 24 14:00:59 2020 -0400 @@ -65,7 +65,7 @@ <param argument="--maximumInteractionPercentageThreshold" type="float" value='0.1' label="Maximum interaction share" help= "For each genomic distance the maximum value is considered and all candidates need to have at least \'max_value * maximumInteractionPercentageThreshold\' interactions." /> <param argument="--pValue" type="float" label="P-value" help= "Rejection level for the statistical test for H0. H0 is peak region and background have the same distribution." value='0.05'/> <param argument="--maxLoopDistance" optional='true' type="integer" label="Maximal loop distance" help= "Maximum genomic distance of a loop, usually loops are within a distance of ~2MB." value='2000000'/> - <param argument="--minLoopDistance" optional='true' type="integer" label="Maximal loop distance" help= "Minimum genomic distance of a loop to be considered." value='100000'/> + <param argument="--minLoopDistance" optional='true' type="integer" label="Minimum loop distance" help= "Minimum genomic distance of a loop to be considered." value='100000'/> <param argument="--chromosomes" optional='true' type="text" label="Chromosomes to include" help= "Chromosomes to include in the analysis. If not set, all chromosomes are included." /> <param argument="--region" optional='true' type="text" label="Chromosomes to include" help= "The format is chr:start-end." /> <param name="statisticalTest_selector" type="select" label="Stistical test">