Mercurial > repos > bgruening > hicexplorer_hicdetectloops

diff test-data/raw_qc_report @ 6:c3f9037423bd draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 2a0943e78bdc8ebb13f181399206a9eea37ed78f"
author iuc
date Tue, 16 Mar 2021 15:32:15 +0000
parents 2d1f9759fa0e
children 0410b6aada45
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line diff
--- a/test-data/raw_qc_report	Fri Dec 11 21:19:07 2020 +0000
+++ b/test-data/raw_qc_report	Tue Mar 16 15:32:15 2021 +0000
@@ -1,5 +1,5 @@
 
-File	matrix.cool		
+File	matrix.h5		
 Sequenced reads	983		
 Min rest. site distance	300		
 Max library insert size	1000		
@@ -12,11 +12,11 @@
 Low mapping quality	164	(16.68)
 
 #	count	(percentage w.r.t. mappable, unique and high quality pairs)
-dangling end	0	(0.00)
+dangling end GATC	1	(0.33)
 self ligation (removed)	0	(0.00)
 One mate not close to rest site	0	(0.00)
-same fragment	85	(28.33)
-self circle	0	(0.00)
+same fragment	84	(28.00)
+self circle	33	(11.00)
 duplicated pairs	0	(0.00)
 
 #	count	(percentage w.r.t. total valid pairs used)