Mercurial > repos > bgruening > hicexplorer_hicdetectloops
view test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 7:0d6c2ff54c76 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa140a9f660eab2459e21b0b637b129d7de24c02
author | iuc |
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date | Tue, 10 Jan 2023 19:20:16 +0000 |
parents | c3f9037423bd |
children | 0410b6aada45 |
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# Created with chicQualityControl version 3.6 # QC report for matrices: 0_matrix.cool 1_matrix.cool #Sparsity threshold for rejection: sparsity <= 0.05 are rejected. Number of reference points: 43 Number of accepted reference points: 35 Number of rejected reference points: 8 Number of faulty reference points: 0 A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices. It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends. Please check the results of hicInfo to validate this for your data.