Mercurial > repos > bgruening > hicexplorer_hicdifferentialtad
annotate test-data/raw_qc_report @ 5:4977f65da0ff draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
author | iuc |
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date | Thu, 05 Dec 2024 18:30:32 +0000 |
parents | 77d8e0fd162a |
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rev | line source |
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c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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1 |
2
77d8e0fd162a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
iuc
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0
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2 File matrix.cool |
0
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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3 Sequenced reads 983 |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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parents:
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4 Min rest. site distance 300 |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
bgruening
parents:
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5 Max library insert size 1000 |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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6 |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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parents:
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7 # count (percentage w.r.t. total sequenced reads) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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8 Pairs mappable, unique and high quality 300 (30.52) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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parents:
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9 Hi-C contacts 215 (21.87) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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parents:
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10 One mate unmapped 506 (51.48) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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parents:
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11 One mate not unique 13 (1.32) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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12 Low mapping quality 164 (16.68) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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parents:
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13 |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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parents:
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14 # count (percentage w.r.t. mappable, unique and high quality pairs) |
2
77d8e0fd162a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
iuc
parents:
0
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15 dangling end GATC (restriction sequence GATC) 1 (0.33) |
0
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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16 self ligation (removed) 0 (0.00) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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17 One mate not close to rest site 0 (0.00) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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18 same fragment 84 (28.00) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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19 self circle 33 (11.00) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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20 duplicated pairs 0 (0.00) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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21 |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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22 # count (percentage w.r.t. total valid pairs used) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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23 inter chromosomal 24 (11.16) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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24 Intra short range (< 20kb) 61 (28.37) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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25 Intra long range (>= 20kb) 130 (60.47) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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26 Read pair type: inward pairs 42 (19.53) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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27 Read pair type: outward pairs 66 (30.70) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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28 Read pair type: left pairs 48 (22.33) |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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parents:
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29 Read pair type: right pairs 35 (16.28) |