comparison hicDifferentialTAD.xml @ 1:608538d083a2 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa140a9f660eab2459e21b0b637b129d7de24c02

0:c852ad97ba28

            <param name="tadDomains" ftype='bed' value="hicDifferentialTAD/multiNone_domains.bed" />
            <param name="pValue" value="1.0" />
            <param name="mode_selector" value="all" />
            <param name="modeReject" value="one" />
            <output name="acceptedTADs" file="hicDifferentialTAD/accepted.txt" ftype="txt" />
            <output name="rejectedTADs" file="hicDifferentialTAD/rejected.txt" ftype="txt" />
        </test>
    </tests>
    <help><![CDATA[

Differential TAD detection

1:608538d083a2

            <param name="tadDomains" ftype='bed' value="hicDifferentialTAD/multiNone_domains.bed" />
            <param name="pValue" value="1.0" />
            <param name="mode_selector" value="all" />
            <param name="modeReject" value="one" />
            <output name="acceptedTADs" file="hicDifferentialTAD/accepted.txt" ftype="txt" />
            <!-- TODO remove lines_diff when updating to >=3.7 where" a multicore issue was solved that led to skipping data at the start and end of chromosomes-->
            <output name="rejectedTADs" file="hicDifferentialTAD/rejected.txt" ftype="txt" lines_diff="4"/>
        </test>
    </tests>
    <help><![CDATA[

Differential TAD detection