comparison test-data/raw_qc_report @ 0:c852ad97ba28 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
author bgruening
date Tue, 16 Mar 2021 21:17:26 +0000
parents
children 77d8e0fd162a
comparison
equal deleted inserted replaced
-1:000000000000 0:c852ad97ba28
1
2 File matrix.h5
3 Sequenced reads 983
4 Min rest. site distance 300
5 Max library insert size 1000
6
7 # count (percentage w.r.t. total sequenced reads)
8 Pairs mappable, unique and high quality 300 (30.52)
9 Hi-C contacts 215 (21.87)
10 One mate unmapped 506 (51.48)
11 One mate not unique 13 (1.32)
12 Low mapping quality 164 (16.68)
13
14 # count (percentage w.r.t. mappable, unique and high quality pairs)
15 dangling end GATC 1 (0.33)
16 self ligation (removed) 0 (0.00)
17 One mate not close to rest site 0 (0.00)
18 same fragment 84 (28.00)
19 self circle 33 (11.00)
20 duplicated pairs 0 (0.00)
21
22 # count (percentage w.r.t. total valid pairs used)
23 inter chromosomal 24 (11.16)
24 Intra short range (< 20kb) 61 (28.37)
25 Intra long range (>= 20kb) 130 (60.47)
26 Read pair type: inward pairs 42 (19.53)
27 Read pair type: outward pairs 66 (30.70)
28 Read pair type: left pairs 48 (22.33)
29 Read pair type: right pairs 35 (16.28)