Mercurial > repos > bgruening > hicexplorer_hicdifferentialtad

diff test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 0:c852ad97ba28 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
author bgruening
date Tue, 16 Mar 2021 21:17:26 +0000
parents
children 77d8e0fd162a
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+++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report	Tue Mar 16 21:17:26 2021 +0000
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+# Created with chicQualityControl version 3.6
+# QC report for matrices: 0_matrix.cool 1_matrix.cool 
+#Sparsity threshold for rejection: sparsity <= 0.05 are rejected.
+
+Number of reference points: 43
+Number of accepted reference points: 35
+Number of rejected reference points: 8
+Number of faulty reference points: 0
+
+
+A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices.
+It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends.
+Please check the results of hicInfo to validate this for your data.