Mercurial > repos > bgruening > hicexplorer_hicdifferentialtad
changeset 1:608538d083a2 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa140a9f660eab2459e21b0b637b129d7de24c02
| author | iuc |
|---|---|
| date | Thu, 12 Jan 2023 17:40:56 +0000 |
| parents | c852ad97ba28 |
| children | 77d8e0fd162a |
| files | hicDifferentialTAD.xml macros.xml |
| diffstat | 2 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/hicDifferentialTAD.xml Tue Mar 16 21:17:26 2021 +0000 +++ b/hicDifferentialTAD.xml Thu Jan 12 17:40:56 2023 +0000 @@ -61,7 +61,8 @@ <param name="mode_selector" value="all" /> <param name="modeReject" value="one" /> <output name="acceptedTADs" file="hicDifferentialTAD/accepted.txt" ftype="txt" /> - <output name="rejectedTADs" file="hicDifferentialTAD/rejected.txt" ftype="txt" /> + <!-- TODO remove lines_diff when updating to >=3.7 where" a multicore issue was solved that led to skipping data at the start and end of chromosomes--> + <output name="rejectedTADs" file="hicDifferentialTAD/rejected.txt" ftype="txt" lines_diff="4"/> </test> </tests> <help><![CDATA[
--- a/macros.xml Tue Mar 16 21:17:26 2021 +0000 +++ b/macros.xml Thu Jan 12 17:40:56 2023 +0000 @@ -1,7 +1,7 @@ <macros> <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> <token name="@TOOL_VERSION@">3.6</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@USE_RANGE@"> #if $use_range.select_use_range == "yes_use_range": --range $use_range.range_min:$use_range.range_max @@ -333,7 +333,7 @@ <param name="scaleFactor2" type="float" value="1" label="Scale factor for input" help="(--scaleFactors)" /> </xml> <xml name="xMax"> - <param argument="--xMax" name="xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" /> + <param argument="--xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" /> </xml> <xml name="filterThreshold"> <param argument="--filterThreshold" name="filterThreshold_low" type="float" value="-1.5" label="Remove bins of low coverage" help="e.g. -1.5; Both Thresholds needs to be set to take effect." />