Mercurial > repos > bgruening > hicexplorer_hicfindrestrictionsites
annotate test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 10:972dcccb5bbc draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
author | iuc |
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date | Mon, 01 Jul 2024 19:51:20 +0000 |
parents | 6c5097f6d41e |
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10
972dcccb5bbc
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
iuc
parents:
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1 # Created with chicQualityControl version 3.7.5 |
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8ea7e91d13b3
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
iuc
parents:
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2 # QC report for matrices: 0_matrix.cool 1_matrix.cool |
8ea7e91d13b3
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
iuc
parents:
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3 #Sparsity threshold for rejection: sparsity <= 0.05 are rejected. |
8ea7e91d13b3
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
iuc
parents:
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4 |
8ea7e91d13b3
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
iuc
parents:
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5 Number of reference points: 43 |
8ea7e91d13b3
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
iuc
parents:
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6 Number of accepted reference points: 35 |
8ea7e91d13b3
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
iuc
parents:
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7 Number of rejected reference points: 8 |
8ea7e91d13b3
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
iuc
parents:
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8 Number of faulty reference points: 0 |
8ea7e91d13b3
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
iuc
parents:
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9 |
8ea7e91d13b3
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
iuc
parents:
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10 |
8ea7e91d13b3
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
iuc
parents:
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11 A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices. |
8ea7e91d13b3
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
iuc
parents:
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12 It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends. |
8ea7e91d13b3
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
iuc
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13 Please check the results of hicInfo to validate this for your data. |