diff hicFindRestrictionSites.xml @ 2:3c03ddb45833 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 4b602d427e0fc0da5353a4510798349de98e4ae4"

--- a/hicFindRestrictionSites.xml	Wed Feb 05 19:52:08 2020 -0500
+++ b/hicFindRestrictionSites.xml	Wed Mar 11 16:53:49 2020 -0400
@@ -18,23 +18,23 @@
                         help="The organism genome fasta file to compute the restriction enzyme position."/>
         <param argument="--searchPattern" type="text" value=""
                 label="Restriction enzyme sequence"
-                help='Search pattern. For example, for HindIII this pattern is \"AAGCTT\". 
-                    Both, forward and reverse strand are searched for a match. The pattern 
-                    is a regexp and can contain regexp specif syntax 
+                help='Search pattern. For example, for HindIII this pattern is \"AAGCTT\".
+                    Both, forward and reverse strand are searched for a match. The pattern
+                    is a regexp and can contain regexp specif syntax
                     (see https://docs.python.org/2/library/re.html). For example the pattern
-                    CG..GC will find all occurrence of CG followed by any two bases and then GC.'/>       
+                    CG..GC will find all occurrence of CG followed by any two bases and then GC.'/>
     </inputs>
     <outputs>
 
         <data name="restrictionSites" from_work_dir="restriction_site.bed" format="bed" label="${tool.name} on ${fasta.name} ${searchPattern} [${on_string}]: Restriction sites"/>
-    
+
     </outputs>
     <tests>
         <test>
             <param name="fasta" value="hicFindRestrictionSites/reference_genome.fasta"/>
 
             <param name="searchPattern" value="GTAC"/>
-            
+
             <output name="restrictionSites" file="hicFindRestrictionSites/restriction_sites.bed" ftype="bed" compare="sim_size"/>
         </test>
     </tests>