Mercurial > repos > bgruening > hicexplorer_hicfindtads
view test-data/raw_qc_report @ 9:4ce06ae9893a draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit dddc0b9035b8edadfd45d74b01aeca245c2725d7
author | iuc |
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date | Fri, 27 Apr 2018 08:53:10 -0400 |
parents | 43332e51a712 |
children |
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File matrix.h5 Pairs considered 983 Min rest. site distance 300 Max library insert size 1000 # count (percentage w.r.t. total sequenced reads) Pairs mappable, unique and high quality 300 (30.52) Pairs used 215 (21.87) One mate unmapped 506 (51.48) One mate not unique 13 (1.32) One mate low quality 164 (16.68) # count (percentage w.r.t. mappable, unique and high quality pairs) dangling end 0 (0.00) self ligation (removed) 0 (0.00) One mate not close to rest site 0 (0.00) same fragment 85 (28.33) self circle 0 (0.00) duplicated pairs 0 (0.00) # count (percentage w.r.t. total valid pairs used) inter chromosomal 24 (11.16) short range < 20kb 61 (28.37) long range 130 (60.47) inward pairs 42 (19.53) outward pairs 66 (30.70) left pairs 48 (22.33) right pairs 35 (16.28)