# HG changeset patch
# User iuc
# Date 1673377675 0
# Node ID 5746d61f0a91f685b42c65e6a4ed5c059156a8bc
# Parent  d404277cc87a26d7246fe81f2b72be88a0960cf6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa140a9f660eab2459e21b0b637b129d7de24c02

diff -r d404277cc87a -r 5746d61f0a91 hicFindTADs.xml
--- a/hicFindTADs.xml	Tue Mar 16 14:59:18 2021 +0000
+++ b/hicFindTADs.xml	Tue Jan 10 19:07:55 2023 +0000
@@ -148,7 +148,7 @@
             <param name="matrix_h5_cooler" value="small_test_matrix.h5" />
             <conditional name="precomputedZscore_conditional">
                 <param name="precomputedZscore_selector" value="precomputed" />
-                <param name="scoreFile" value="find_TADs/multiFDR_tad_score.bm" />
+                <param name="scoreFile" value="find_TADs/multiFDR_tad_score.bm" ftype="bedgraph" />
                 <param name="zscoreMatrix" value="find_TADs/multiFDR_zscore_matrix.h5" />
             </conditional>
             <param name="minBoundaryDistance" value="5000" />
diff -r d404277cc87a -r 5746d61f0a91 macros.xml
--- a/macros.xml	Tue Mar 16 14:59:18 2021 +0000
+++ b/macros.xml	Tue Jan 10 19:07:55 2023 +0000
@@ -1,7 +1,7 @@
 <macros>
     <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token>
     <token name="@TOOL_VERSION@">3.6</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@USE_RANGE@">
         #if $use_range.select_use_range == "yes_use_range":
             --range $use_range.range_min:$use_range.range_max
@@ -333,7 +333,7 @@
         <param name="scaleFactor2" type="float" value="1" label="Scale factor for input" help="(--scaleFactors)" />
     </xml>
     <xml name="xMax">
-        <param argument="--xMax" name="xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" />
+        <param argument="--xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" />
     </xml>
     <xml name="filterThreshold">
         <param argument="--filterThreshold" name="filterThreshold_low" type="float" value="-1.5" label="Remove bins of low coverage" help="e.g. -1.5; Both Thresholds needs to be set to take effect." />