Mercurial > repos > bgruening > hicexplorer_hicinfo
comparison test-data/raw_qc_report @ 0:708e1b8eff5c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3b41d687ff30583540d055f6995de00530cca81d-dirty"
| author | bgruening |
|---|---|
| date | Mon, 16 Dec 2019 14:34:49 -0500 |
| parents | |
| children | 3a74a441b11f |
comparison
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| -1:000000000000 | 0:708e1b8eff5c |
|---|---|
| 1 | |
| 2 File matrix.cool | |
| 3 Sequenced reads 983 | |
| 4 Min rest. site distance 300 | |
| 5 Max library insert size 1000 | |
| 6 | |
| 7 # count (percentage w.r.t. total sequenced reads) | |
| 8 Pairs mappable, unique and high quality 300 (30.52) | |
| 9 Hi-C contacts 215 (21.87) | |
| 10 One mate unmapped 506 (51.48) | |
| 11 One mate not unique 13 (1.32) | |
| 12 Low mapping quality 164 (16.68) | |
| 13 | |
| 14 # count (percentage w.r.t. mappable, unique and high quality pairs) | |
| 15 dangling end 0 (0.00) | |
| 16 self ligation (removed) 0 (0.00) | |
| 17 One mate not close to rest site 0 (0.00) | |
| 18 same fragment 85 (28.33) | |
| 19 self circle 0 (0.00) | |
| 20 duplicated pairs 0 (0.00) | |
| 21 | |
| 22 # count (percentage w.r.t. total valid pairs used) | |
| 23 inter chromosomal 24 (11.16) | |
| 24 Intra short range (< 20kb) 61 (28.37) | |
| 25 Intra long range (>= 20kb) 130 (60.47) | |
| 26 Read pair type: inward pairs 42 (19.53) | |
| 27 Read pair type: outward pairs 66 (30.70) | |
| 28 Read pair type: left pairs 48 (22.33) | |
| 29 Read pair type: right pairs 35 (16.28) |